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- affiliation: Stanford University, CA, USA
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2020 – today
- 2024
[i24]Sowmya S. Sundaram, Benjamin Solomon, Avani Khatri, Anisha Laumas, Purvesh Khatri, Mark A. Musen:
Use of a Structured Knowledge Base Enhances Metadata Curation by Large Language Models. CoRR abs/2404.05893 (2024)- [i23]Martin J. O'Connor, Josef Hardi, Marcos Martínez Romero, Sowmya Somasundaram, Brendan Honick, Stephen A. Fisher, Ajay Pillai, Mark A. Musen:
Ensuring Adherence to Standards in Experiment-Related Metadata Entered Via Spreadsheets. CoRR abs/2409.08897 (2024) - [i22]Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat, J. Harry Caufield, John Graybeal, Nomi L. Harris, Naouel Karam, Christian Kindermann, Nicolas Matentzoglu, James A. Overton, Mark A. Musen, Christopher J. Mungall:
A Change Language for Ontologies and Knowledge Graphs. CoRR abs/2409.13906 (2024) - 2023
- [j120]John H. Morris, Karthik Soman
, Rabia E. Akbas, Xiaoyuan Zhou, Brett Smith, Elaine C. Meng, Conrad C. Huang, Gabriel Cerono, Gundolf Schenk, Angela Rizk-Jackson, Adil Harroud, Lauren M. Sanders, Sylvain V. Costes, Krish Bharat, Arjun Chakraborty, Alexander R. Pico, Taline Mardirossian, Michael J. Keiser, Alice Tang, Josef Hardi, Yongmei Shi, Mark A. Musen, Sharat Israni, Sui Huang, Peter W. Rose, Charlotte A. Nelson, Sergio E. Baranzini:
The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information. Bioinform. 39(2) (2023) - [c235]Sowmya S. Sundaram, Mark A. Musen:
Making Metadata More FAIR Using Large Language Models. DaMaLOS 2023 - [c234]Clément Jonquet, John Graybeal, Syphax Bouazzouni, Michael Dorf, Nicola Fiore, Xeni Kechagioglou, Timothy Redmond, Ilaria Rosati, Alex Skrenchuk, Jennifer Vendetti, Mark A. Musen:
Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology. ISWC 2023: 38-58 - [i21]Sowmya S. Sundaram, Mark A. Musen:
Making Metadata More FAIR Using Large Language Models. CoRR abs/2307.13085 (2023) - [i20]Martin J. O'Connor, Marcos Martínez Romero, Mete Ugur Akdogan, Josef Hardi, Mark A. Musen:
A Comprehensive Approach to Ensuring Quality in Spreadsheet-Based Metadata. CoRR abs/2312.09107 (2023) - 2022
- [j119]Sergio E. Baranzini, Katy Börner, John H. Morris, Charlotte A. Nelson, Karthik Soman, Erica Schleimer, Michael J. Keiser, Mark A. Musen, Roger Pearce, Tahsin Reza, Brett Smith, Bruce William Herr II, Boris Oskotsky, Angela Rizk-Jackson, Katherine P. Rankin, Stephan J. Sanders, Riley Bove, Peter W. Rose, Sharat Israni, Sui Huang:
A Biomedical Open Knowledge Network Harnesses the Power of AI to Understand Deep Human Biology. AI Mag. 43(1): 46-58 (2022) - [c233]Mark A. Musen, Jiang Bian, Bruce Chorpita, Vimla Patel, Cui Tao:
Ontologies in the Behavioral Sciences: Accelerating Research and the Accessibility and Use of Knowledge. AMIA 2022 - [c232]Simon Curty, Hans-Georg Fill, Rafael S. Gonçalves, Mark A. Musen:
An Architecture for Attesting to the Provenance of Ontologies Using Blockchain Technologies. BMSD 2022: 182-199 - [c231]Michelle G. Giglio, Suvarna Nadendla, Arthur Brady, Amanda Charbonneau, Karl Czajkowski, Jeremy Yang, Tom Gillespie, Philippe Rocca-Serra, Jeffrey S. Grethe, Raja Mazumder, Bernard de Bono, Jonathan C. Silverstein, Daniel Clark, Mark A. Musen, Owen White:
Data Harmonization through Use of Community Standards in the Common Fund Data Ecosystem. ICBO 2022: 1-7 - [d3]Bruce William Herr II, Josef Hardi, Ellen M. Quardokus, Andreas Bueckle, Anita R. Caron, Lu Chen, Fusheng Wang, David Osumi-Sutherland, Mark A. Musen, Katy Börner:
Tables for "Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas". Version 1. Zenodo, 2022 [all versions]
- [d2]Bruce William Herr II, Josef Hardi, Ellen M. Quardokus, Andreas Bueckle, Anita R. Caron, Lu Chen, Fusheng Wang, David Osumi-Sutherland, Mark A. Musen, Katy Börner:
Tables for "Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas". Version 2. Zenodo, 2022 [all versions] - [d1]Bruce William Herr II, Josef Hardi, Ellen M. Quardokus, Andreas Bueckle, Anita R. Caron, Lu Chen, Fusheng Wang, David Osumi-Sutherland, Mark A. Musen, Katy Börner:
Tables for "Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas". Version 3. Zenodo, 2022 [all versions] - [i19]Mark A. Musen, Martin J. O'Connor, Erik Schultes, Marcos Martínez Romero, Josef Hardi, John Graybeal:
Modeling community standards for metadata as templates makes data FAIR. CoRR abs/2208.02836 (2022) - 2021
- [j118]Amrapali Maitra, Maulik R. Kamdar, Donna M. Zulman, Marie C. Haverfield, Cati Brown-Johnson, Rachel Schwartz, Sonoo Thadaney Israni, Abraham Verghese, Mark A. Musen:
Using ethnographic methods to classify the human experience in medicine: a case study of the presence ontology. J. Am. Medical Informatics Assoc. 28(9): 1900-1909 (2021) - [c230]Andre Kumar, Rachael C. Aikens, Jason Horn, Lisa Shieh, Mark A. Musen, Michael Baiocchi, Russ B. Altman, Mary K. Goldstein, Steven M. Asch, Jonathan H. Chen:
Randomized user testing of recommender system clinical decision support. AMIA 2021 - [c229]Simon Curty, Hans-Georg Fill, Rafael S. Gonçalves, Mark A. Musen:
A WebProtégé Plugin for Attesting to the Provenance of Ontologies on the Ethereum Blockchain. ISWC (Posters/Demos/Industry) 2021 - [i18]Amrapali Maitra, Maulik R. Kamdar, Donna M. Zulman, Marie C. Haverfield, Cati Brown-Johnson, Rachel Schwartz, Sonoo Thadaney Israni, Abraham Verghese, Mark A. Musen:
Using Ethnographic Methods to Classify the Human Experience in Medicine: A Case Study of the Presence Ontology. CoRR abs/2105.07238 (2021) - 2020
- [j117]Hana Pergl Sustkova, Kristina Maria Hettne, Peter Wittenburg, Annika Jacobsen, Tobias Kuhn, Robert Pergl, Jan Slifka, Peter McQuilton, Barbara Magagna, Susanna-Assunta Sansone, Markus Stocker, Melanie Imming, Larry Lannom, Mark A. Musen, Erik Schultes:
FAIR Convergence Matrix: Optimizing the Reuse of Existing FAIR-Related Resources. Data Intell. 2(1-2): 158-170 (2020) - [j116]Andre Kumar, Rachael C. Aikens, Jason Hom, Lisa Shieh, Jonathan Chiang, David Morales, Divya Saini, Mark A. Musen, Michael T. M. Baiocchi, Russ B. Altman, Mary K. Goldstein, Steven M. Asch, Jonathan H. Chen:
OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases. J. Am. Medical Informatics Assoc. 27(12): 1850-1859 (2020) - [j115]Axel Polleres, Maulik R. Kamdar, Javier D. Fernández, Tania Tudorache, Mark A. Musen:
A more decentralized vision for Linked Data. Semantic Web 11(1): 101-113 (2020) - [c228]Samson W. Tu, Csongor Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nicholas R. Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Çelik, Robert Jakob:
Toward a Harmonized WHO Family of International Classifications Content Model. AMIA 2020 - [c227]Samson W. Tu, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nick Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Celik, Robert Jakob:
Toward a Harmonized WHO Family of International Classifications Content Model. MIE 2020: 1409-1410 - [i17]Maulik R. Kamdar, Mark A. Musen:
An Empirical Meta-analysis of the Life Sciences (Linked?) Open Data on the Web. CoRR abs/2006.04161 (2020) - [i16]Katy Börner, Ellen M. Quardokus, Bruce William Herr II, Leonard E. Cross, Elizabeth G. Record, Yingnan Ju, Andreas D. Bueckle, James P. Sluka, Jonathan C. Silverstein, Kristen M. Browne, Sanjay Jain, Clive H. Wasserfall, Marda L. Jorgensen, Jeffrey M. Spraggins, Nathan Heath Patterson, Mark A. Musen, Griffin M. Weber:
Construction and Usage of a Human Body Common Coordinate Framework Comprising Clinical, Semantic, and Spatial Ontologies. CoRR abs/2007.14474 (2020)
2010 – 2019
- 2019
- [j114]Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen:
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. Database J. Biol. Databases Curation 2019: baz059 (2019) - [j113]Maulik R. Kamdar, Javier D. Fernández, Axel Polleres, Tania Tudorache, Mark A. Musen:
Enabling Web-scale data integration in biomedicine through Linked Open Data. npj Digit. Medicine 2 (2019) - [c226]Martin J. O'Connor, Denise B. Warzel, Marcos Martínez Romero, Josef Hardi, Debra Willrett, Aras Efekhari, John Graybeal, Mark A. Musen:
Unleashing the value of Common Data Elements through the CEDAR Workbench. AMIA 2019 - [c225]Mark A. Musen:
Making Data FAIR Requires More than Just Principles: We Need Knowledge Technologies. eScience 2019: 530-532 - [c224]Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen:
Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings. ESWC 2019: 146-161 - [c223]Rafael S. Gonçalves, Matthew Horridge, Rui Li, Yu Liu, Mark A. Musen, Csongor I. Nyulas, Evelyn Obamos, Dhananjay Shrouty, David Temple:
Use of OWL and Semantic Web Technologies at Pinterest. ISWC (2) 2019: 418-435 - [c222]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen:
WebProtégé: A Cloud-Based Ontology Editor. WWW (Companion Volume) 2019: 686-689 - [c221]Lisette Espín-Noboa, Florian Lemmerich, Simon Walk, Markus Strohmaier, Mark A. Musen:
HopRank: How Semantic Structure Influences Teleportation in PageRank (A Case Study on BioPortal). WWW 2019: 2708-2714 - [i15]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Mark A. Musen:
WebProtégé: A Cloud-Based Ontology Editor. CoRR abs/1902.08251 (2019) - [i14]Peter Wittenburg, Hana Pergl Sustkova, Annalisa Montesanti, Margreet Bloemers, S. H. de Waard, Mark A. Musen, John Graybeal, Kristina M. Hettne, Annika Jacobsen, Robert Pergl, Rob W. W. Hooft, Christine Staiger, Celia W. G. van Gelder, Sebastiaan L. Knijnenburg, A. C. van Arkel, Bert Meerman, Mark D. Wilkinson, Susanna-Assunta Sansone, Philippe Rocca-Serra, Peter McQuilton, Alejandra N. González-Beltrán, G. J. C. Aben, Patrícia Henning, Maria Simone de Menezes Alencar, C. Ribeiro, C. R. L. Silva, Luís Fernando Sayão, Luana Sales, Viviane Veiga, Jefferson Lima, Simone Dib, Paula Xavier dos Santos, R. Murtinho, Jakob Tendel, B. F. Schaap, P. M. Brouwer, A. K. Gavai, Yamine Bouzembrak, Hans J. P. Marvin, Albert Mons, Tobias Kuhn, Alessa A. Gambardella, Ricardo de Miranda Azevedo, Vesa Muhonen, Mira van der Naald, N. W. Smit, M. J. Buys, Taco F. de Bruin, Fieke Schoots, H. J. E. Goodson, Henry S. Rzepa, Keith G. Jeffery, Hugh P. Shanahan, M. Axton, Veniamin Tkachenko, Anne Deslattes Mays, Natalie Meyers, Michael Conlon, Laurel L. Haak, Erik A. Schultes:
The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data. CoRR abs/1902.11162 (2019) - [i13]Lisette Espín-Noboa, Florian Lemmerich, Simon Walk, Markus Strohmaier, Mark A. Musen:
HopRank: How Semantic Structure Influences Teleportation in PageRank (A Case Study on BioPortal). CoRR abs/1903.05704 (2019) - [i12]Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen:
Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings. CoRR abs/1903.08206 (2019) - [i11]Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen:
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. CoRR abs/1903.09270 (2019) - [i10]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen:
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. CoRR abs/1905.06480 (2019) - [i9]Rafael S. Gonçalves, Matthew Horridge, Rui Li, Yu Liu, Mark A. Musen, Csongor I. Nyulas, Evelyn Obamos, Dhananjay Shrouty, David Temple:
Use of OWL and Semantic Web Technologies at Pinterest. CoRR abs/1907.02106 (2019) - 2018
- [j112]Syed Ahmad Chan Bukhari, Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei-Hoi Cheung, Steven H. Kleinstein:
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. BMC Bioinform. 19(1): 268:1-268:6 (2018) - [j111]Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Marie-Angélique Laporte, Mark A. Musen, Valeria Pesce, Pierre Larmande:
AgroPortal: A vocabulary and ontology repository for agronomy. Comput. Electron. Agric. 144: 126-143 (2018) - [j110]Maulik R. Kamdar, Simon Walk, Tania Tudorache, Mark A. Musen:
Analyzing user interactions with biomedical ontologies: A visual perspective. J. Web Semant. 49: 16-30 (2018) - [c220]James Geller, Vipina Kuttichi Keloth, Mark A. Musen:
How Sustainable are Biomedical Ontologies? AMIA 2018 - [c219]Deendayal Dinakarpandian, Michaela Liedtke, Mark A. Musen, Bhavish Dinakar:
TOCSOC: A Temporal Ontology for Comparing the Survival Outcomes of Clinical Trials in Oncology. ICBO 2018 - [c218]Michael Halper, Christopher Ochs, Yehoshua Perl, Sivaram Arabandi, Mark A. Musen:
Quality Assurance of Ontology Content Reuse. ICBO 2018 - [c217]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen:
Protégé 5.5 - Improvements for Editing Biomedical Ontologies. ICBO 2018 - [c216]Rafael S. Gonçalves, Csongor I. Nyulas, Marcos Martínez Romero, Martin J. O'Connor, John Graybeal, Mark A. Musen:
Using Ontologies to Drive the Creation of High-Quality Metadata in CEDAR. ISWC (P&D/Industry/BlueSky) 2018 - [c215]Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen:
WebProtégé 3.0 - Collaborative OWL Ontology Engineering in the Cloud. ISWC (P&D/Industry/BlueSky) 2018 - [c214]Axel Polleres, Maulik R. Kamdar, Javier D. Fernández, Tania Tudorache, Mark A. Musen:
A More Decentralized Vision for Linked Data. DeSemWeb@ISWC 2018 - [c213]Attila L. Egyedi, Martin J. O'Connor, Marcos Martínez Romero, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen:
Using semantic technologies to enhance metadata submissions to public repositories in biomedicine. SWAT4LS 2018 - [c212]Mark A. Musen, Susanna-Assunta Sansone, Kei-Hoi Cheung, Steven H. Kleinstein, Morgan Crafts, Stephan C. Schürer, John Graybeal:
CEDAR: Semantic Web Technology to Support Open Science. WWW (Companion Volume) 2018: 427-428 - [i8]Rafael S. Gonçalves, Mark A. Musen:
The Variable Quality of Metadata About Biological Samples Used in Biomedical Experiments. CoRR abs/1808.06907 (2018) - 2017
- [j109]Marcos Martínez Romero, Clément Jonquet, Martin J. O'Connor, John Graybeal, Alejandro Pazos, Mark A. Musen:
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. J. Biomed. Semant. 8(1): 21:1-21:22 (2017) - [j108]Rafael S. Gonçalves, Samson W. Tu, Csongor I. Nyulas, Michael J. Tierney, Mark A. Musen:
An ontology-driven tool for structured data acquisition using Web forms. J. Biomed. Semant. 8(1): 26:1-26:14 (2017) - [j107]Yun Lou, Samson W. Tu, Csongor Nyulas, Tania Tudorache, Robert J. G. Chalmers, Mark A. Musen:
Use of ontology structure and Bayesian models to aid the crowdsourcing of ICD-11 sanctioning rules. J. Biomed. Informatics 68: 20-34 (2017) - [j106]Christopher Ochs, Yehoshua Perl, James Geller, Sivaram Arabandi, Tania Tudorache, Mark A. Musen:
An empirical analysis of ontology reuse in BioPortal. J. Biomed. Informatics 71: 165-177 (2017) - [j105]Maulik R. Kamdar, Tania Tudorache, Mark A. Musen:
A systematic analysis of term reuse and term overlap across biomedical ontologies. Semantic Web 8(6): 853-871 (2017) - [c211]Guoqian Jiang, Walter S. Campbell, Timothy Clark, Cui Tao, Mark A. Musen:
Big Data to Knowledge (BD2K) and the Application of Metadata. AMIA 2017 - [c210]Maulik R. Kamdar, Mark A. Musen:
Mechanism-based Pharmacovigilance over the Life Sciences Linked Open Data Cloud. AMIA 2017 - [c209]Marcos Martínez Romero, Martin J. O'Connor, Ravi D. Shankar, Maryam Panahiazar, Debra Willrett, Attila Levente Egyedi, Olivier Gevaert, John Graybeal, Mark A. Musen:
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. AMIA 2017 - [c208]Geoffrey J. Tso, Samson W. Tu, Mark A. Musen, Mary K. Goldstein:
High-Risk Drug-Drug Interactions Between Clinical Practice Guidelines for Management of Chronic Conditions. CRI 2017 - [c207]Marcos Martínez Romero, Martin J. O'Connor, Michael Dorf, Jennifer Vendetti, Debra Willrett, Attila L. Egyedi, John Graybeal, Mark A. Musen:
Supporting Ontology-Based Standardization of Biomedical Metadata in the CEDAR Workbench. ICBO 2017 - [c206]Tiffany I. Leung, Mary K. Goldstein, Mark A. Musen, Ruth Cronkite, Jonathan H. Chen, Assaf Gottlieb, Eran Leitersdorf:
The New HIT: Human Health Information Technology. MedInfo 2017: 768-772 - [c205]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, John Graybeal, Mark A. Musen:
Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies. SemSci@ISWC 2017: 39-46 - [c204]Christopher Ochs, James Geller, Mark A. Musen, Yehoshua Perl:
Real Time Summarization and Visualization of Ontology Change in Protégé. VOILA@ISWC 2017: 75-86 - [c203]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen:
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. ISWC (2) 2017: 103-110 - [c202]Maulik R. Kamdar, Simon Walk, Tania Tudorache, Mark A. Musen:
BiOnIC: A Catalog of User Interactions with Biomedical Ontologies. ISWC (2) 2017: 130-138 - [c201]Mark A. Musen:
Making Online Datasets More Searchable and Accessible: The CEDAR project. SIMBig 2017: 20-22 - [c200]Attila L. Egyedi, Martin J. O'Connor, Marcos Martínez Romero, Debra Willrett, Josef Hardi, John Graybeal, Mark A. Musen:
Embracing Semantic Technology for Better Metadata Authoring in Biomedicine. SWAT4LS 2017 - [c199]Maulik R. Kamdar, Mark A. Musen:
PhLeGrA: Graph Analytics in Pharmacology over the Web of Life Sciences Linked Open Data. WWW 2017: 321-329 - [c198]Simon Walk, Lisette Espin Noboa, Denis Helic, Markus Strohmaier, Mark A. Musen:
How Users Explore Ontologies on the Web: A Study of NCBO's BioPortal Usage Logs. WWW 2017: 775-784 - [i7]Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez Romero, John Graybeal, Mark A. Musen:
Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies. CoRR abs/1708.01286 (2017) - 2016
- [j104]Jonathan M. Mortensen, Natalie Telis, Jacob J. Hughey, Hua Fan-Minogue, Kimberly Van Auken, Michel Dumontier, Mark A. Musen:
Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. J. Biomed. Informatics 60: 199-209 (2016) - [j103]Christopher Ochs, Zhe He, Ling Zheng, James Geller, Yehoshua Perl, George Hripcsak, Mark A. Musen:
Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. J. Biomed. Informatics 61: 63-76 (2016) - [j102]Christopher Ochs, James Geller, Yehoshua Perl, Mark A. Musen:
A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies. J. Biomed. Informatics 62: 90-105 (2016) - [c197]Mark A. Musen, Martin J. O'Connor, Marcos Martínez Romero, Attila Levente Egyedi, Debra Willrett, John Graybeal:
CEDAR: Better Data Sharing Through the Authoring of Better Metadata. AMIA 2016 - [c196]Martin J. O'Connor, Marcos Martínez Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen:
An Open Repository Model for Acquiring Knowledge About Scientific Experiments. EKAW 2016: 762-777 - [c195]Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Mark A. Musen, Cyril Pommier, Pierre Larmande:
Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal. ICBO/BioCreative 2016 - [c194]Simon Walk, Tania Tudorache, Mark A. Musen:
Visualizing User Editing Behavior in Collaborative Ontology-engineering Projects. VOILA@ISWC 2016: 68-79 - [i6]Simon Walk, Lisette Espin Noboa, Denis Helic, Markus Strohmaier, Mark A. Musen:
How Users Explore Ontologies on the Web: A Study of NCBO's BioPortal Usage Logs. CoRR abs/1610.09160 (2016) - [i5]Marcos Martínez Romero, Clément Jonquet, Martin J. O'Connor, John Graybeal, Alejandro Pazos, Mark A. Musen:
NCBO Ontology Recommender 2.0: An Enhanced Approach for Biomedical Ontology Recommendation. CoRR abs/1611.05973 (2016) - 2015
- [j101]Mark A. Musen:
The protégé project: a look back and a look forward. AI Matters 1(4): 4-12 (2015) - [j100]Nicola Guarino, Mark A. Musen:
Applied ontology: The next decade begins. Appl. Ontology 10(1): 1-4 (2015) - [j99]Nicola Guarino, Mark A. Musen:
Ten years of Applied Ontology. Appl. Ontology 10(3-4): 169-170 (2015) - [j98]Simon Walk, Philipp Singer, Markus Strohmaier, Denis Helic, Natalya Fridman Noy, Mark A. Musen:
How to apply Markov chains for modeling sequential edit patterns in collaborative ontology-engineering projects. Int. J. Hum. Comput. Stud. 84: 51-66 (2015) - [j97]Charles P. Friedman, Joshua C. Rubin, Jeffrey S. Brown, Melinda Buntin, Milton Corn, Lynn Etheredge, Carl A. Gunter, Mark A. Musen, Richard Platt, William W. Stead, Kevin Sullivan, Douglas Van Houweling:
Toward a science of learning systems: a research agenda for the high-functioning Learning Health System. J. Am. Medical Informatics Assoc. 22(1): 43-50 (2015) - [j96]Jonathan M. Mortensen, Evan P. Minty, Michael Januszyk, Timothy E. Sweeney, Alan L. Rector, Natalya Fridman Noy, Mark A. Musen:
Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT. J. Am. Medical Informatics Assoc. 22(3): 640-648 (2015) - [j95]Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser:
The center for expanded data annotation and retrieval. J. Am. Medical Informatics Assoc. 22(6): 1148-1152 (2015) - [j94]Hao Wang, Tania Tudorache, Dejing Dou, Natalya Fridman Noy, Mark A. Musen:
Analysis and Prediction of User Editing Patterns in Ontology Development Projects. J. Data Semant. 4(2): 117-132 (2015) - [j93]Daniel Lamprecht, Markus Strohmaier, Denis Helic, Csongor Nyulas, Tania Tudorache, Natalya Fridman Noy, Mark A. Musen:
Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia. Semantic Web 6(4): 403-422 (2015) - [c193]Samson W. Tu, Csongor Nyulas, Tania Tudorache, Mark A. Musen:
A Method to Compare ICF and SNOMED CT for Coverage of U.S. Social Security Administration's Disability Listing Criteria. AMIA 2015 - [c192]Christopher Ochs, Yehoshua Perl, James Geller, Mark A. Musen:
Using aggregate taxonomies to summarize SNOMED CT evolution. BIBM 2015: 1008-1015 - [c191]Yuhao Zhang, Tania Tudorache, Matthew Horridge, Mark A. Musen:
Helping Users Bootstrap Ontologies: An Empirical Investigation. CHI 2015: 3395-3398 - [c190]Clément Jonquet, Vincent Emonet, Mark A. Musen:
Roadmap for a Multilingual BioPortal. MSW@ESWC 2015: 15-26 - [c189]Ray W. Fergerson, Paul R. Alexander, Michael Dorf, Rafael S. Gonçalves, Manuel Salvadores, Alex Skrenchuk, Jennifer Vendetti, Mark A. Musen:
NCBO BioPortal version 4. ICBO 2015 - [c188]Rafael S. Gonçalves, Csongor I. Nyulas, Samson W. Tu, Mark A. Musen:
OWL-based form generation and structured data acquisition. ICBO 2015 - [c187]Rafael S. Gonçalves, Samson W. Tu, Csongor I. Nyulas, Michael J. Tierney, Mark A. Musen:
Structured data acquisition with ontology-based web forms. ICBO 2015 - [c186]Maulik R. Kamdar, Tania Tudorache, Mark A. Musen:
Investigating term reuse and overlap in biomedical ontologies. ICBO 2015 - [c185]Csongor I. Nyulas, Samson W. Tu, Tania Tudorache, Mark A. Musen:
Modeling and tools for supporting post-coordination in ICD-11. ICBO 2015 - [c184]Matthew Horridge, Mark A. Musen:
Snap-SPARQL: A Java Framework for Working with SPARQL and OWL. OWLED 2015: 154-165 - [c183]João Paulo Orlando, Mark A. Musen, Dilvan A. Moreira:
User Extensible System to Identify Problems in OWL Ontologies and SWRL Rules. RuleML 2015: 112-126 - [c182]