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ORCIDICBO 2013: Montreal, Canada
- Michel Dumontier, Robert Hoehndorf, Christopher J. O. Baker:
Proceedings of the 4th International Conference on Biomedical Ontology, ICBO 2013, Montreal, Canada, July 7-12, 2013. CEUR Workshop Proceedings 1060, CEUR-WS.org 2013
Research Papers
- Karen Eilbeck, Jason R. Jacobs, Sunanda R. McGarvey, Cynthia Vinion, Catherine J. Staes:
Exploring the use of ontologies and automated reasoning to manage selection of reportable condition lab tests from LOINC. 12-15 - Maxwell Lewis Neal, Daniel L. Cook, John H. Gennari:
An OWL knowledge base for classifying and querying collections of physiological models: A prototype human physiome. 16-21 - Yuki Yamagata, Hiroko Kou, Kouji Kozaki, Riichiro Mizoguchi, Takeshi Imai, Kazuhiko Ohe:
Ontological Model of Abnormal States and its Application in the Medical Domain. 22-27 - Albert Goldfain, Min Xu, Jonathan P. Bona, Barry Smith:
Ontology Based Annotation of Contextualized Vital Signs. 28-33 - Simon Kocbek, Jin-Dong Kim, Jean-Luc Perret, Patricia L. Whetzel:
Visualizing ontology mappings to help ontology engineers identify relevant ontologies for their reuse. 34-39 - Jonathan Mortensen, Paul R. Alexander, Mark A. Musen, Natalya Fridman Noy:
Crowdsourcing Ontology Verification. 40-45 - Carlo Torniai, Shahim Essaid, Brian Lowe, Jon Corson-Rikert, Melissa A. Haendel:
Finding common ground: integrating the eagle-i and VIVO ontologies. 46-49 - Shahim Essaid, Carlo Torniai, Melissa A. Haendel:
Enabling semantic search in a bio-specimen repository. 50-53 - Snezana Nikolic, Prabhu Shankar, Sivaram Arabandi, Akshaye Dhawan, Rajshekhar Sunderraman, Shamkant B. Navathe, Kunal Malhotra, Rani H. Singh:
ONSTR: The Ontology for Newborn Screening Follow-up and Translational Research. 54-61 - Jie Zheng, Elisabetta Manduchi, Christian J. Stoeckert Jr.:
Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations. 62-67 - William R. Hogan, Josh Hanna, Eric Joseph, Mathias Brochhausen:
Towards a Consistent and Scientifically Accurate Drug Ontology. 68-73 - José L. V. Mejino Jr., Ravensara S. Travillian, Timothy C. Cox, Linda G. Shapiro, James F. Brinkley:
Human Development Domain of the Ontology of Craniofacial Development and Malformation. 74-77 - Alexander P. Cox, Mark Jensen, Alan Ruttenberg, Kinga Szigeti, Alexander D. Diehl:
Measuring Cognitive Functions: Hurdles in the Development of the NeuroPsychological Testing Ontology. 78-83 - Christopher Ochs, Zhe He, Yehoshua Perl, Sivaram Arabandi, Michael Halper, James Geller:
Choosing the Granularity of Abstraction Networks for Orientation and Quality Assurance of the Sleep Domain Ontology. 84-89 - Catalina Martínez-Costa, Stefan Schulz:
Ontology-based reinterpretation of the SNOMED CT context model. 90-95
Early Career Symposium
- Heiner Oberkampf, Sonja Zillner, Bernhard Bauer, Matthias Hammon:
An OGMS-based Model for Clinical Information (MCI). 97-100 - Mélanie Courtot, Jie Zheng, Christian J. Stoeckert Jr., Ryan Remy Brinkman, Alan Ruttenberg:
Diagnostic criteria and clinical guidelines standardization to automate case classification. 101-104 - Matthew H. Brush, Chris Mungall, Nicole L. Washington, Melissa A. Haendel:
What's in a Genotype?: An Ontological Characterization for Integration of Genetic Variation Data. 105-108 - William D. Duncan, Titus Schleyer, Alan Ruttenberg:
Representing Intracoronal Tooth Restorations in the Ontology for Oral Health and Disease. 109-112 - Leonid L. Chepelev, Michel Dumontier:
The Web as a Distributed Biochemical Reactor: Semantically Enabled Metabolic Fate Prediction. 113-116
Poster Abstracts
- Arash Shaban-Nejad, Christian Jauvin, Maxime Lavigne, Masoumeh T. Izadi, Luke Mondor, Anya Okhmatovskaia, David L. Buckeridge:
PopHR: An Integrated Semantic Framework for Population Health Surveillance. 118 - Patrick Ray, Alexander D. Diehl:
The Ocular Disease Ontology. 119 - Matthew H. Brush, Jie Zheng, Yongqun He, Sirarat Sarntivijai, Bjoern Peters, Alexander D. Diehl, Christian J. Stoeckert Jr., Melissa A. Haendel:
Alignment of Cultured Cell Modeling Across OBO Foundry Ontologies: Key Outcomes, Insights. 120 - Mark Jensen, Alexander P. Cox, Barry Smith, Alexander D. Diehl:
Representing Disease Courses: An Application of the Neurological Disease Ontology to Multiple Sclerosis Typology. 121 - Zuoshuang Xiang, Yongqun He:
HINO: BFO-aligned ontology representation of human molecular interactions and pathways. 122 - Alison Callahan, Michel Dumontier:
HyQue: A Semantic Web tool for evaluating scientific hypotheses. 123 - James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters:
A Taxonomy for Immunologists. 124 - Samuel Croset, John P. Overington, Dietrich Rebholz-Schuhmann:
Brain, Biomedical Knowledge Manipulation. 125 - Samuel Croset, John P. Overington, Dietrich Rebholz-Schuhmann:
The Functional Therapeutic Chemical Classification System. 125 - Karen E. Rasmussen, Mary E. Dolan:
OncoCL: A Cancer Cell Ontology. 126
Software Demonstration Abstracts
- Christopher Ochs, Yehoshua Perl, James Geller:
BLUSNO: A System for Orientation, Visualization, and Quality Assurance of SNOMED CT Using Abstraction Networks. 128-129 - Melissa A. Haendel, Carlo Torniai, Nicole A. Vasilevsky, Scott Hoffmann, Daniela Bourges-Waldegg:
eagle-i: ontology-driven federated search and data entry tools for discovering biomedical research resources. 130-131 - Tomasz Adamusiak, Naoki Shimoyama, Marek Tutaj, Mary Shimoyama:
Next generation ontology browser. 132-133 - Ulf Schwarz, Holger Stenzhorn, Nikolina Koleva, Luc Schneider, Emilio M. Sanfilippo:
A method for semi-automatic extension of a middle-layer ontology. 134-135 - Cheng Chen, Josh Hanna, John R. Talburt, Mathias Brochhausen, William R. Hogan:
A Demonstration of Entity Identity Information Management Applied to Demographic Data in a Referent Tracking System. 136-137 - Matthew Horridge, Jonathan Mortensen, Tania Tudorache, Jennifer Vendetti, Csongor Nyulas, Mark A. Musen, Natalya Fridman Noy:
Introducing WebProtégé 2 as a Collaborative Platform for Editing Biomedical Ontologies. 138-139
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