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ORCIDJournal of the American Medical Informatics Association, Volume 27
Volume 27, Number 1, January 2020
- Özlem Uzuner
, Amber Stubbs, Leslie Lenert:
Advancing the state of the art in automatic extraction of adverse drug events from narratives. 1-2
- Sam Henry, Kevin Buchan, Michele Filannino, Amber Stubbs, Özlem Uzuner:
2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records. 3-12 - Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang, Cui Tao, Hua Xu:
A study of deep learning approaches for medication and adverse drug event extraction from clinical text. 13-21 - Meizhi Ju, Nhung T. H. Nguyen, Makoto Miwa, Sophia Ananiadou:
An ensemble of neural models for nested adverse drug events and medication extraction with subwords. 22-30 - Youngjun Kim, Stéphane M. Meystre:
Ensemble method-based extraction of medication and related information from clinical texts. 31-38 - Fenia Christopoulou, Thy Thy Tran, Sunil Kumar Sahu, Makoto Miwa, Sophia Ananiadou:
Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods. 39-46 - Hong-Jie Dai, Chu-Hsien Su, Chi-Shin Wu:
Adverse drug event and medication extraction in electronic health records via a cascading architecture with different sequence labeling models and word embeddings. 47-55 - Long Chen, Yu Gu, Xin Ji, Zhiyong Sun, Haodan Li, Yuan Gao, Yang Huang:
Extracting medications and associated adverse drug events using a natural language processing system combining knowledge base and deep learning. 56-64 - Xi Yang, Jiang Bian, Ruogu Fang, Ragnhildur I. Bjarnadottir, William R. Hogan, Yonghui Wu:
Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting. 65-72 - Joshua R. Vest, Mark A. Unruh, Lawrence P. Casalino, Jason S. Shapiro:
The complementary nature of query-based and directed health information exchange in primary care practice. 73-80 - Hans Moen, Kai Hakala, Laura-Maria Peltonen, Henry Suhonen, Filip Ginter, Tapio Salakoski, Sanna Salanterä:
Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods. 81-88 - Mohammed M. Alawad, Shang Gao, John X. Qiu, Hong-Jun Yoon, James Blair Christian, Lynne Penberthy, Brent J. Mumphrey, Xiao-Cheng Wu, Linda Coyle, Georgia D. Tourassi:
Automatic extraction of cancer registry reportable information from free-text pathology reports using multitask convolutional neural networks. 89-98 - Ziqi Zhang, Chao Yan, Diego A. Mesa, Jimeng Sun, Bradley A. Malin:
Ensuring electronic medical record simulation through better training, modeling, and evaluation. 99-108 - Nicholas J. Dobbins, Clifford H. Spital, Robert A. Black, Jason M. Morrison, Bas de Veer, Elizabeth Zampino, Robert D. Harrington, Bethene D. Britt, Kari A. Stephens, Adam B. Wilcox, Peter Tarczy-Hornoch, Sean D. Mooney:
Leaf: an open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research. 109-118 - Lingjiao Zhang, Xiruo Ding, Yanyuan Ma, Naveen Muthu, Imran Ajmal, Jason H. Moore, Daniel S. Herman, Jinbo Chen:
A maximum likelihood approach to electronic health record phenotyping using positive and unlabeled patients. 119-126 - Yasir Tarabichi, Jake Goyden, Rujia Liu, Steven Lewis, Joseph Sudano, David C. Kaelber:
A step closer to nationwide electronic health record-based chronic disease surveillance: characterizing asthma prevalence and emergency department utilization from 100 million patient records through a novel multisite collaboration. 127-135 - Praveen Kumar, Anastasiya Nestsiarovich, Stuart J. Nelson, Berit Kerner, Douglas J. Perkins, Christophe G. Lambert:
Imputation and characterization of uncoded self-harm in major mental illness using machine learning. 136-146 - Colby Redfield, Abdulhakim Tlimat, Yoni Halpern, David W. Schoenfeld, Edward Ullman, David A. Sontag, Larry A. Nathanson, Steven Horng:
Derivation and validation of a machine learning record linkage algorithm between emergency medical services and the emergency department. 147-153
- Pedro J. Caraballo, Joseph A. Sutton, Jyothsna Giri, Jessica A. Wright, Wayne T. Nicholson, Iftikhar J. Kullo, Mark A. Parkulo, Suzette J. Bielinski, Ann M. Moyer:
Integrating pharmacogenomics into the electronic health record by implementing genomic indicators. 154-158
- Pavithra I. Dissanayake, Tiago K. Colicchio, James J. Cimino:
Using clinical reasoning ontologies to make smarter clinical decision support systems: a systematic review and data synthesis. 159-174 - Akshay Rajaram, Zachary Hickey, Nimesh Patel, Joseph Newbigging, Brent Wolfrom:
Training medical students and residents in the use of electronic health records: a systematic review of the literature. 175-180
- Corrigendum to: Real world evidence in cardiovascular medicine: assuring data validity in electronic health record-based studies. 181
Volume 27, Number 2, February 2020
- Suzanne Bakken:
Consumer- and patient-oriented informatics innovation: continuing the legacy of Warner V. Slack. 183-184
- Robin Huang, Na Liu, Mary Ann Nicdao, Mary Mikaheal, Tanya Baldacchino, Annabelle Albeos, Kathy Petoumenos, Kamal Sud, Jinman Kim:
Emotion sharing in remote patient monitoring of patients with chronic kidney disease. 185-193 - Dina Demner-Fushman, Yassine Mrabet, Asma Ben Abacha:
Consumer health information and question answering: helping consumers find answers to their health-related information needs. 194-201 - Shefali Haldar, Sonali R. Mishra, Ari H. Pollack, Wanda Pratt:
Informatics opportunities to involve patients in hospital safety: a conceptual model. 202-211 - Samantha Stonbraker, Tiffany Porras, Rebecca Schnall:
Patient preferences for visualization of longitudinal patient-reported outcomes data. 212-224 - Hansi Zhang, Christopher Wheldon, Adam G. Dunn, Cui Tao, Jinhai Huo, Rui Zhang, Mattia Prosperi, Yi Guo, Jiang Bian:
Mining Twitter to assess the determinants of health behavior toward human papillomavirus vaccination in the United States. 225-235 - Bryan D. Steitz, Kim M. Unertl, Mia A. Levy:
Characterizing communication patterns among members of the clinical care team to deliver breast cancer treatment. 236-243 - Jiayi Tong, Jing Huang, Jessica Chubak, Xuan Wang, Jason H. Moore, Rebecca A. Hubbard, Yong Chen:
An augmented estimation procedure for EHR-based association studies accounting for differential misclassification. 244-253 - V. G. Vinod Vydiswaran, Daniel M. Romero, Xinyan Zhao, Deahan Yu, Iris N. Gomez-Lopez, Jin Xiu Lu, Bradley E. Iott, Ana Baylin, Erica C. Jansen, Philippa Clarke, Veronica J. Berrocal, Robert Goodspeed, Tiffany C. Veinot:
Uncovering the relationship between food-related discussion on Twitter and neighborhood characteristics. 254-264 - Fahd A. Ahmad, Philip R. O. Payne, Ian Lackey, Rachel Komeshak, Kenneth Kenney, Brianna Magnusen, Christopher Metts, Thomas Bailey:
Using REDCap and Apple ResearchKit to integrate patient questionnaires and clinical decision support into the electronic health record to improve sexually transmitted infection testing in the emergency department. 265-273 - Kate Honeyford, Graham S. Cooke, Anne Kinderlerer, Elizabeth Williamson, Mark Gilchrist, Alison H. Holmes, The Sepsis Big Room, Ben Glampson, Abdulrahim Mulla, Ceire Costelloe:
Evaluating a digital sepsis alert in a London multisite hospital network: a natural experiment using electronic health record data. 274-283 - David S. Dakwa, Vincent D. Marshall, Bruce W. Chaffee:
The impact of drug order complexity on prospective medication order review and verification time. 284-293 - Alon Geva, Steven H. Abman, Shannon F. Manzi, Dunbar D. Ivy, Mary Mullen, John Griffin, Chen Lin, Guergana K. Savova, Kenneth D. Mandl:
Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources. 294-300
- Alexandra C. Businger, Theresa E. Fuller, Jeffrey L. Schnipper, Sarah Collins Rossetti, Kumiko O. Schnock, Ronen Rozenblum, Anuj K. Dalal, James C. Benneyan, David W. Bates, Patricia C. Dykes:
Lessons learned implementing a complex and innovative patient safety learning laboratory project in a large academic medical center. 301-307
- Srijesa Khasnabish, Zoe Burns, Madeline Couch, Mary Mullin, Randall Newmark, Patricia C. Dykes:
Best practices for data visualization: creating and evaluating a report for an evidence-based fall prevention program. 308-314
- Abeed Sarker, Annika DeRoos, Jeanmarie Perrone:
Mining social media for prescription medication abuse monitoring: a review and proposal for a data-centric framework. 315-329 - Saba Akbar, Enrico W. Coiera, Farah Magrabi:
Safety concerns with consumer-facing mobile health applications and their consequences: a scoping review. 330-340
Volume 27, Number 3, March 2020
- Suzanne Bakken:
Innovation is key for advancing the science of biomedical and health informatics and for publishing in JAMIA. 341-342
- Tsung-Ting Kuo, Jihoon Kim, Rodney A. Gabriel:
Privacy-preserving model learning on a blockchain network-of-networks. 343-354 - Finneas J. R. Catling, Anthony H. Wolff:
Temporal convolutional networks allow early prediction of events in critical care. 355-365 - Luca Bonomi, Xiaoqian Jiang, Lucila Ohno-Machado:
Protecting patient privacy in survival analyses. 366-375 - Rui Duan, Mary Regina Boland, Zixuan Liu, Yue Liu, Howard H. Chang, Hua Xu, Haitao Chu, Christopher H. Schmid, Christopher B. Forrest, John H. Holmes, Martijn J. Schuemie, Jesse A. Berlin, Jason H. Moore, Yong Chen:
Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm. 376-385 - Yili Zhang, Günes Koru:
Understanding and detecting defects in healthcare administration data: Toward higher data quality to better support healthcare operations and decisions. 386-395 - Kushan De Silva, Daniel Jönsson, Ryan T. Demmer:
A combined strategy of feature selection and machine learning to identify predictors of prediabetes. 396-406 - Hannah L. Weeks, Cole Beck, Elizabeth McNeer, Michael L. Williams, Cosmin Adrian Bejan, Joshua C. Denny, Leena Choi:
medExtractR: A targeted, customizable approach to medication extraction from electronic health records. 407-418 - Max Moldovan, Jyoti Khadka, Renuka Visvanathan, Steve Wesselingh, Maria C. S. Inacio:
Using elastic nets to estimate frailty burden from routinely collected national aged care data. 419-428 - Sara M. Andrews, Melissa Raspa, Anne Edwards, Rebecca Moultrie, Lauren Turner-Brown, Laura Wagner, Alexandra Alvarez Rivas, Mary Katherine Frisch, Anne C. Wheeler:
"Just tell me what's going on": The views of parents of children with genetic conditions regarding the research use of their child's electronic health record. 429-436
- Zina M. Ibrahim, Honghan Wu, Ahmed Hamoud, Lukas Stappen, Richard J. B. Dobson, Andrea Agarossi:
On classifying sepsis heterogeneity in the ICU: insight using machine learning. 437-443 - Péter Szilágyi, Rebecca Valderrama, Sitaram Vangala, Christina Albertin, David Okikawa, Michael Sloyan, Nathalie Lopez, Carlos F. Lerner:
Pediatric patient portal use in one health system. 444-448 - James R. Rogers, Hollis Mills, Lisa V. Grossman, Andrew Goldstein, Chunhua Weng:
Understanding the nature and scope of clinical research commentaries in PubMed. 449-456
- Stephen Wu, Kirk Roberts, Surabhi Datta, Jingcheng Du, Zongcheng Ji, Yuqi Si, Sarvesh Soni, Qiong Wang, Qiang Wei, Yang Xiang, Bo Zhao, Hua Xu:
Deep learning in clinical natural language processing: a methodical review. 457-470 - Varsha G. Vimalananda, Jay D. Orlander, Melissa K. Afable, B. Graeme Fincke, Amanda K. Solch, Seppo T. Rinne, Eun Ji Kim, Sarah L. Cutrona, Dylan D. Thomas, Judith L. Strymish, Steven R. Simon:
Electronic consultations (E-consults) and their outcomes: a systematic review. 471-479 - Adam Rule, Michael F. Chiang, Michelle R. Hribar:
Using electronic health record audit logs to study clinical activity: a systematic review of aims, measures, and methods. 480-490
- Sandeep Reddy, Sonia Allan, Simon Coghlan, Paul Cooper:
A governance model for the application of AI in health care. 491-497 - Andrew J. Vickers, Ling Y. Chen, Peter D. Stetson:
Interfaces for collecting data from patients: 10 golden rules. 498-500
- Corrigendum to: Evaluating a digital sepsis alert in a London multisite hospital network: a natural experiment using electronic health record data. 501
Volume 27, Number 4, April 2020
- Suzanne Bakken:
Hot topics in clinical informatics. 503-504
- Toan C. Ong, Lindsey M. Duca, Michael G. Kahn, Tessa L. Crume:
A hybrid approach to record linkage using a combination of deterministic and probabilistic methodology. 505-513 - Rachel L. Richesson, Catherine J. Staes, Brian J. Douthit, Traci Thoureen, Daniel J. Hatch, Kensaku Kawamoto, Guilherme Del Fiol:
Measuring implementation feasibility of clinical decision support alerts for clinical practice recommendations. 514-521 - Rouzbeh Razavi, Amin Gharipour, Mojgan Gharipour:
Depression screening using mobile phone usage metadata: a machine learning approach. 522-530 - Julia Adler-Milstein, Wendi Zhao, Rachel Willard-Grace, Margae Knox, Kevin Grumbach:
Electronic health records and burnout: Time spent on the electronic health record after hours and message volume associated with exhaustion but not with cynicism among primary care clinicians. 531-538 - Rubina F. Rizvi, Jake Vasilakes, Terrence J. Adam, Genevieve B. Melton, Jeffrey R. Bishop, Jiang Bian, Cui Tao, Rui Zhang:
iDISK: the integrated DIetary Supplements Knowledge base. 539-548 - Shefali Haldar, Sonali R. Mishra, Yoojung Kim, Andrea L. Hartzler, Ari H. Pollack, Wanda Pratt:
Use and impact of an online community for hospital patients. 549-557 - Elizabeth A. Campbell, Ellen J. Bass, Aaron J. Masino:
Temporal condition pattern mining in large, sparse electronic health record data: A case study in characterizing pediatric asthma. 558-566 - Travis R. Goodwin, Dina Demner-Fushman:
A customizable deep learning model for nosocomial risk prediction from critical care notes with indirect supervision. 567-576 - Jordan Everson, Evan Butler:
Hospital adoption of multiple health information exchange approaches and information accessibility. 577-583 - Chen Lin, Steven Bethard, Dmitriy Dligach, Farig Sadeque, Guergana Savova, Timothy A. Miller:
Does BERT need domain adaptation for clinical negation detection? 584-591 - William K. Diprose, Nicholas Buist, Ning Hua, Quentin-Gabriel Thurier, George Shand, Reece Robinson:
Physician understanding, explainability, and trust in a hypothetical machine learning risk calculator. 592-600 - Vanessa L. Kronzer, Liwei Wang, Hongfang Liu, John M. Davis III, Jeffrey A. Sparks, Cynthia S. Crowson:
Investigating the impact of disease and health record duration on the eMERGE algorithm for rheumatoid arthritis. 601-605 - Julia Adler-Milstein, Michael D. Wang:
The impact of transitioning from availability of outside records within electronic health records to integration of local and outside records within electronic health records. 606-612
- Mustafa I. Hussain, Ariana M. Nelson, Brent G. Yeung, Lauren Sukumar, Kai Zheng:
How the presentation of patient information and decision-support advisories influences opioid prescribing behavior: A simulation study. 613-620
- Yingxiang Huang, Wentao Li, Fima Macheret, Rodney A. Gabriel, Lucila Ohno-Machado:
A tutorial on calibration measurements and calibration models for clinical prediction models. 621-633
- Frank W. Rockhold, Jessica D. Tenenbaum, Rachel L. Richesson, Keith A. Marsolo, Emily C. O'Brien:
Design and analytic considerations for using patient-reported health data in pragmatic clinical trials: report from an NIH Collaboratory roundtable. 634-638 - Christine A. Sinsky, Adam Rule, Genna R. Cohen, Brian G. Arndt, Tait D. Shanafelt, Christopher D. Sharp, Sally L. Baxter, Ming Tai-Seale, Sherry H. F. Yan, You Chen, Julia Adler-Milstein, Michelle R. Hribar:
Metrics for assessing physician activity using electronic health record log data. 639-643 - Jonathan D. Hron, Eli M. Lourie:
Have you got the time? Challenges using vendor electronic health record metrics of provider efficiency. 644-646 - Teresa Zayas-Cabán, Amy P. Abernethy, Patricia Flatley Brennan, Stephanie Devaney, Anthony R. Kerlavage, Rachel Ramoni, P. Jon White:
Leveraging the health information technology infrastructure to advance federal research priorities. 647-651 - Teresa Zayas-Cabán, Kevin J. Chaney, Donald W. Rucker:
National health information technology priorities for research: A policy and development agenda. 652-657 - Philip R. O. Payne, Don E. Detmer:
Language matters: precision health as a cross-cutting care, research and policy agenda. 658-661
- The 2019 Fellow Cohort of the American College of Medical Informatics. 662-664
Volume 27, Number 5, May 2020
- Suzanne Bakken, Gregory L. Alexander:
Celebrating the International Year of the Nurse and Midwife: A look at nursing in JAMIA. 665-666 - Ryan J. Shaw, Qing Yang, A. Barnes, D. Hatch, Matthew J. Crowley, Allison Vorderstrasse, Jacqueline Vaughn, Anna Diane, Allison A. Lewinski, M. Jiang, Janee Stevenson, Dori M. Steinberg:
Self-monitoring diabetes with multiple mobile health devices. 667-676 - Meghan Reading Turchioe, Lisa V. Grossman, Annie C. Myers, Dawon Baik, Parag Goyal, Ruth M. Masterson Creber:
Visual analogies, not graphs, increase patients' comprehension of changes in their health status. 677-689 - Deborah J. Cohen, Tamar Wyte-Lake, David A. Dorr, Rachel Gold, Richard J. Holden, Richelle J. Koopman, Joshua Colasurdo, Nathaniel Warren:
Unmet information needs of clinical teams delivering care to complex patients and design strategies to address those needs. 690-699 - Niranjan Balachandar, Ken Chang, Jayashree Kalpathy-Cramer, Daniel L. Rubin:
Accounting for data variability in multi-institutional distributed deep learning for medical imaging. 700-708 - Natalie C. Benda, Lala Tanmoy Das, Erika L. Abramson, Katherine Blackburn, Amy Thoman, Rainu Kaushal, Yongkang Zhang, Jessica S. Ancker:
"How did you get to this number?" Stakeholder needs for implementing predictive analytics: a pre-implementation qualitative study. 709-716 - Carolyn L. Turvey, Dawn M. Klein, Kim M. Nazi, Susan T. Haidary, Omar Bouhaddou, Nelson Hsing, Margaret Donahue:
Racial differences in patient consent policy preferences for electronic health information exchange. 717-725 - Jeffrey Lam Shin Cheung, Natalie Paolucci, Courtney Price, Jenna Sykes, Samir Gupta:
A system uptake analysis and GUIDES checklist evaluation of the Electronic Asthma Management System: A point-of-care computerized clinical decision support system. 726-737 - Kin Wah Fung, Julia Xu, Olivier Bodenreider:
The new International Classification of Diseases 11th edition: a comparative analysis with ICD-10 and ICD-10-CM. 738-746 - Tsung-Ting Kuo, Rodney A. Gabriel, Krishna R. Cidambi, Lucila Ohno-Machado:
EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning. 747-756 - Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks. 757-769 - Saul J. Weiner, Shiyuan Wang, Brendan Kelly, Gunjan Sharma, Alan Schwartz:
How accurate is the medical record? A comparison of the physician's note with a concealed audio recording in unannounced standardized patient encounters. 770-775 - Shanoja Naik, Stephanie Voong, Megan Bamford, Kyle Smith, Angela Joyce, Doris Grinspun:
Assessment of the Nursing Quality Indicators for Reporting and Evaluation (NQuIRE) database using a data quality index. 776-782 - Andrew Stirling, Tracy Tubb, Emily S. Reiff, Chad A. Grotegut, Jennifer Gagnon, Weiyi Li, Gail Bradley, Eric G. Poon, Benjamin Alan Goldstein:
Identified themes of interactive visualizations overlayed onto EHR data: an example of improving birth center operating room efficiency. 783-787 - Jonathan P. Palma, Jonathan D. Hron, Anthony A. Luberti:
Early experiences with combined fellowship training in clinical informatics. 788-792 - Jeffrey S. Brown, Judith C. Maro, Michael D. Nguyen, Robert Ball:
Using and improving distributed data networks to generate actionable evidence: the case of real-world outcomes in the Food and Drug Administration's Sentinel system. 793-797 - Esther C. Moore, Clare L. Tolley, David W. Bates, Sarah P. Slight:
A systematic review of the impact of health information technology on nurses' time. 798-807 - Brian D. Tran, Yunan Chen, Songzi Liu, Kai Zheng:
How does medical scribes' work inform development of speech-based clinical documentation technologies? A systematic review. 808-817 - Marloes E. Derksen, S. van Strijp, A. E. Kunst, Joost G. Daams, Monique W. M. Jaspers, M. P. Fransen:
Serious games for smoking prevention and cessation: A systematic review of game elements and game effects. 818-833 - Sarah S. Nouri, Julia Adler-Milstein, Crishyashi Thao, Prasad Acharya, Jill Barr-Walker, Urmimala Sarkar, Courtney R. Lyles:
Patient characteristics associated with objective measures of digital health tool use in the United States: A literature review. 834-841
Volume 27, Number 6, June 2020
- Suzanne Bakken:
Informatics is a critical strategy in combating the COVID-19 pandemic. 843-844 - Cynthia S. Gadd, Elaine B. Steen, Carla M. Caro, Sandra Greenberg, Jeffrey J. Williamson, Douglas B. Fridsma:
Domains, tasks, and knowledge for health informatics practice: results of a practice analysis. 845-852 - J. Jeffery Reeves, Hannah M. Hollandsworth, Francesca J. Torriani, Randy Taplitz, Shira Abeles, Ming Tai-Seale, Marlene Millen, Brian J. Clay, Christopher A. Longhurst:
Rapid response to COVID-19: health informatics support for outbreak management in an academic health system. 853-859