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ORCIDChristopher G. Chute
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2020 – today
- 2025
[j93]Kellie M. Walters
, Marshall Clark, Sofia Dard, Stephanie S. Hong, Elizabeth Kelly, Kristin Kostka, Adam M. Lee, Robert T. Miller, Michele Morris, Matvey B. Palchuk, Emily R. Pfaff, Adam B. Wilcox, Alexis Graves, Alfred (Jerrod) Anzalone, Amin Manna, Amit Saha, Amy Olex, Andrea Zhou, Andrew E. Williams, Andrew Southerland, Andrew T. Girvin, Anita Walden, Anjali A Sharathkumar, Benjamin R. C. Amor, Benjamin Bates, Brian Hendricks, Brijesh Patel, Caleb Alexander, Carolyn T. Bramante, Cavin Ward-Caviness, Charisse R. Madlock-Brown, Christine Suver, Christopher G. Chute, Christopher Dillon, Chunlei Wu, Clare Schmitt, Cliff Takemoto, Dan Housman, Davera Gabriel, David A. Eichmann, Diego Mazzotti, Don Brown, Eilis Boudreau, Elaine Hill, Elizabeth Zampino, Emily Carlson Marti, Evan French, Farrukh M. Koraishy, Federico Mariona, Fred W. Prior, George Sokos, Greg Martin, Harold P. Lehmann, Heidi Spratt, Hemalkumar Mehta, Hongfang Liu, Hythem Sidky, J. W. Awori Hayanga, Jami Pincavitch, Jaylyn Clark, Jeremy Richard Harper, Jessica Islam, Jin Ge, Joel Gagnier, Joel H. Saltz, Joel Saltz, Johanna Loomba, John Buse, Jomol P. Mathew, Joni L. Rutter, Julie A. McMurry, Justin Guinney, Justin Starren, Karen Crowley, Katie Rebecca Bradwell, Ken Wilkins, Kenneth R. Gersing, Kenrick Dwain Cato, Kimberly Murray, Lavance Northington, Lee Allan Pyles, Leonie Misquitta, Lesley Cottrell, Lili M. Portilla, Mariam Deacy, Mark M. Bissell, Mary Emmett, Mary Morrison Saltz, Melissa A. Haendel, Meredith Adams, Meredith Temple-O'Connor, Michael G. Kurilla, Nabeel Qureshi, Nasia Safdar, Nicole Garbarini, Noha Sharafeldin, Ofer Sadan, Patricia A. Francis, Penny Wung Burgoon, Peter N. Robinson, Philip R. O. Payne, Rafael Fuentes, Randeep Jawa, Rebecca Erwin-Cohen, Rena Patel, Richard A. Moffitt, Richard L. Zhu, Rishi Kamaleswaran, Robert Hurley, Saiju Pyarajan, Sam G. Michael, Samuel Bozzette, Sandeep Mallipattu, Satyanarayana Vedula, Scott Chapman, Shawn T. O'Neil, Soko Setoguchi, Steve Johnson, Tellen D. Bennett, Tiffany Callahan, Umit Topaloglu, Usman Sheikh, Valery Gordon, Vignesh Subbian, Warren A. Kibbe, Wenndy Hernandez, Will Beasley, Will Cooper, William Hillegass, Xiaohan Tanner Zhang:
National COVID Cohort Collaborative data enhancements: a path for expanding common data models. J. Am. Medical Informatics Assoc. 32(2): 391-397 (2025)- 2024
- [j92]Shawn T. O'Neil, Charisse R. Madlock-Brown, Kenneth Wilkins, Brenda M. McGrath, Hannah E. Davis, Gina S. Assaf, Hannah Wei, Parya Zareie, Evan T. French, Johanna Loomba, Julie A. McMurry, Andrea Zhou, Christopher G. Chute, Richard A. Moffitt, Emily R. Pfaff, Yun Jae Yoo, Peter Leese, Robert F. Chew, Michael Lieberman, Melissa A. Haendel:
Finding Long-COVID: temporal topic modeling of electronic health records from the N3C and RECOVER programs. npj Digit. Medicine 7(1) (2024) - [c160]Samson W. Tu, Ann-Helene Almborg, Andrea Martinuzzi, Vincenzo Della Mea, Kathy L. Giannangelo, Christopher G. Chute, Cassandra Linton, Ronald Cornet, Can Celik, Robert Jakob:
Linking Health Terminologies: A Unified Approach to the WHO Family of International Classifications. MIE 2024: 1333-1337 - 2023
- [j91]Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen:
Characterizing variability of electronic health record-driven phenotype definitions. J. Am. Medical Informatics Assoc. 30(3): 427-437 (2023) - [j90]Peter Leese, Adit Anand, Andrew T. Girvin, Amin Manna, Saaya Patel, Yun Jae Yoo, Rachel Wong, Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, Janos G. Hajagos, Emily R. Pfaff, Richard A. Moffitt:
Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs. J. Am. Medical Informatics Assoc. 30(6): 1125-1136 (2023) - [j89]Emily R. Pfaff, Andrew T. Girvin, Miles Crosskey, Srushti Gangireddy, Hiral Master, Wei-Qi Wei, Vern Eric Kerchberger, Mark G. Weiner, Paul A. Harris, Melissa A. Basford, Christopher Lunt, Christopher G. Chute, Richard A. Moffitt, Melissa A. Haendel:
De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository. J. Am. Medical Informatics Assoc. 30(7): 1305-1312 (2023) - [j88]Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu:
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 30(12): 2036-2040 (2023) - [c159]Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang:
FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge Graphs. SWAT4HCLS 2023: 165-166 - 2022
- [j87]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John B. Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022) - [j86]Emily R. Pfaff, Andrew T. Girvin, Davera Gabriel, Kristin Kostka, Michele Morris, Matvey B. Palchuk, Harold P. Lehmann, Benjamin R. C. Amor, Mark Bissell, Katie R. Bradwell, Sigfried Gold, Stephanie S. Hong, Johanna Loomba, Amin Manna, Julie A. McMurry, Emily Niehaus, Nabeel Qureshi, Anita Walden, Xiaohan Tanner Zhang, Richard L. Zhu, Richard A. Moffitt, Christopher G. Chute, William G. Adams, Shaymaa Al-Shukri, Alfred Anzalone, Ahmad Baghal, Tellen D. Bennett, Elmer V. Bernstam, Mark M. Bissell, Brian Bush, Thomas R. Campion Jr., Victor Castro, Jack Chang, Deepa D. Chaudhari, Wenjin Chen, San Chu, James J. Cimino, Keith A. Crandall, Mark Crooks, Sara J. Deakyne Davies, John Dipalazzo, David A. Dorr, Dan Eckrich, Sarah E. Eltinge, Daniel G. Fort, George Golovko, Snehil Gupta, Melissa A. Haendel, Janos G. Hajagos, David A. Hanauer, Brett M. Harnett, Ronald Horswell, Nancy Huang, Steven G. Johnson, Michael Kahn, Kamil Khanipov, Curtis Kieler, Katherine Ruiz De Luzuriaga, Sarah E. Maidlow, Ashley Martinez, Jomol Mathew, James C. McClay, Gabriel McMahan, Brian Melancon, Stéphane M. Meystre, Lucio Miele, Hiroki Morizono, Ray Pablo, Lav P. Patel, Jimmy Phuong, Daniel J. Popham, Claudia P. Pulgarin, Carlos Santos, Indra Neil Sarkar, Nancy Sazo, Soko Setoguchi, Selvin Soby, Sirisha Surampalli, Christine Suver, Uma Maheswara Reddy Vangala, Shyam Visweswaran, James von Oehsen, Kellie M. Walters, Laura K. Wiley, David A. Williams, Adrian H. Zai:
Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative. J. Am. Medical Informatics Assoc. 29(4): 609-618 (2022) - [j85]Katie R. Bradwell, Jacob T. Wooldridge, Benjamin R. C. Amor, Tellen D. Bennett, Adit Anand, Carolyn Bremer, Yun Jae Yoo, Zhenglong Qian, Steven G. Johnson, Emily R. Pfaff, Andrew T. Girvin, Amin Manna, Emily Niehaus, Stephanie S. Hong, Xiaohan Tanner Zhang, Richard L. Zhu, Mark Bissell, Nabeel Qureshi, Joel H. Saltz, Melissa A. Haendel, Christopher G. Chute, Harold P. Lehmann, Richard A. Moffitt:
Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset. J. Am. Medical Informatics Assoc. 29(7): 1172-1182 (2022) - [j84]Jason A. Thomas, Randi E. Foraker, Noa Zamstein, Jon D. Morrow, Philip R. O. Payne, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn T. Bramante, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch:
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 29(8): 1350-1365 (2022) - [j83]Yue Yu, Nansu Zong, Andrew Wen, Sijia Liu, Daniel J. Stone, David Knaack, Alanna M. Chamberlain, Emily R. Pfaff, Davera Gabriel, Christopher G. Chute, Nilay Shah, Guoqian Jiang:
Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration. J. Biomed. Informatics 127: 104002 (2022) - [j82]Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang:
FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model. J. Biomed. Informatics 134: 104201 (2022) - [c158]Christopher G. Chute, Susan H. Fenton, Mary H. Stanfill, Kathy L. Giannangelo:
Making a Case for Adoption of ICD-11 Morbidity Reporting in the U.S.: Multiple Perspectives. AMIA 2022 - [c157]Nan Huo, Yue Yu, Nansu Zong, Andrea Cheville, Claude Nanjo, Eric Prud'hommeaux, Deirdre Pachman, Guohui Xiao, Emily R. Pfaff, Christopher G. Chute, Guoqian Jiang, Kathryn J. Ruddy:
Modeling a Cancer Symptom Control Domain Using HL7 FHIR: Applicability of the Minimal Common Oncology Data Elements (mCODE). AMIA 2022 - [c156]Yue Yu, Kathryn J. Ruddy, Nan Huo, Nansu Zong, Deirdre Pachman, Christopher G. Chute, Emily R. Pfaff, Andrea Cheville, Guoqian Jiang:
A Comparative Study on the Capability of Real-World Antineoplastic Drug Data Collection by CanMED, ATC and HemOnc. AMIA 2022 - [c155]Saurav Sengupta, Johanna Loomba, Suchetha Sharma, Donald E. Brown, Lorna E. Thorpe, Melissa A. Haendel, Christopher G. Chute, Stephanie S. Hong:
Analyzing historical diagnosis code data from NIH N3C and RECOVER Programs using deep learning to determine risk factors for Long Covid. BIBM 2022: 2797-2802 - [i4]Saurav Sengupta, Johanna Loomba, Suchetha Sharma, Donald E. Brown, Lorna E. Thorpe, Melissa A. Haendel, Christopher G. Chute, Stephanie S. Hong:
Analyzing historical diagnosis code data from NIH N3C and RECOVER Programs using deep learning to determine risk factors for Long Covid. CoRR abs/2210.02490 (2022) - 2021
- [j81]Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Philip R. O. Payne, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing:
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. 28(3): 427-443 (2021) - [j80]James E. Harrison, Stefanie Weber, Robert Jakob, Christopher G. Chute:
ICD-11: an international classification of diseases for the twenty-first century. BMC Medical Informatics Decis. Mak. 21-S(6): 206 (2021) - [j79]Saskia E. Drösler, Stefanie Weber, Christopher G. Chute:
ICD-11 extension codes support detailed clinical abstraction and comprehensive classification. BMC Medical Informatics Decis. Mak. 21-S(6): 278 (2021) - [j78]Christopher G. Chute, Can Çelik:
Overview of ICD-11 architecture and structure. BMC Medical Informatics Decis. Mak. 21-S(6): 378 (2021) - [j77]Kristy Mabon, Olafr Steinum, Christopher G. Chute:
Postcoordination of codes in ICD-11. BMC Medical Informatics Decis. Mak. 21-S(6): 379 (2021) - [j76]Alan J. Forster, Christopher G. Chute, Harold Alan Pincus, William A. Ghali:
ICD-11: A catalyst for advancing patient safety surveillance globally. BMC Medical Informatics Decis. Mak. 21-S(6): 383 (2021) - [j75]Sebastian Köhler, Michael A. Gargano, Nicolas Matentzoglu, Leigh Carmody, David Lewis-Smith, Nicole A. Vasilevsky, Daniel Danis, Ganna Balagura, Gareth Baynam, Amy M. Brower, Tiffany J. Callahan, Christopher G. Chute, Johanna L. Est, Peter D. Galer, Shiva Ganesan, Matthias Griese, Matthias Haimel, Julia Pazmandi, Marc Hanauer, Nomi L. Harris, Michael Hartnett, Maximilian Hastreiter, Fabian Hauck, Yongqun He, Tim Jeske, Hugh Kearney, Gerhard Kindle, Christoph Klein, Katrin Knoflach, Roland Krause, David Lagorce, Julie A. McMurry, Jillian A. Miller, Monica C. Munoz-Torres, Rebecca L. Peters, Christina K. Rapp, Ana Rath, Shahmir A. Rind, Avi Z. Rosenberg, Michael M. Segal, Markus G. Seidel, Damian Smedley, Tomer Talmy, Yarlalu Thomas, Samuel A. Wiafe, Julie Xian, Zafer Yüksel, Ingo Helbig, Christopher J. Mungall, Melissa A. Haendel, Peter N. Robinson:
The Human Phenotype Ontology in 2021. Nucleic Acids Res. 49(Database-Issue): D1207-D1217 (2021) - [i3]Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu:
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR abs/2110.10780 (2021) - [i2]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John B. Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021) - 2020
- [c154]Samson W. Tu, Csongor Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nicholas R. Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Çelik, Robert Jakob:
Toward a Harmonized WHO Family of International Classifications Content Model. AMIA 2020 - [c153]Samson W. Tu, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nick Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Celik, Robert Jakob:
Toward a Harmonized WHO Family of International Classifications Content Model. MIE 2020: 1409-1410
2010 – 2019
- 2019
- [j74]Christopher G. Chute, Suzanne Bakken, William M. Tierney, Gretchen Purcell Jackson, James J. Cimino:
The 2018 fellow cohort of the American College of Medical Informatics. J. Am. Medical Informatics Assoc. 26(10): 1150-1155 (2019) - [j73]Karamarie Fecho, Stanley C. Ahalt, Saravanan Arunachalam, James Champion, Christopher G. Chute, Sarah Davis, Kenneth Gersing, Gustavo Glusman, Jennifer Hadlock, Jewel Lee, Emily R. Pfaff, Max Robinson, Eric Sid, Casey N. Ta, Hao Xu, Richard L. Zhu, Qian Zhu, David B. Peden:
Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon. J. Biomed. Informatics 100 (2019) - [j72]Alan L. Rector, Stefan Schulz, Jean Marie Rodrigues, Christopher G. Chute, Harold Solbrig:
On beyond Gruber: "Ontologies" in today's biomedical information systems and the limits of OWL. J. Biomed. Informatics X 2: 100002 (2019) - [j71]Xingmin Aaron Zhang, Amy Yates, Nicole A. Vasilevsky, Jean-Philippe F. Gourdine, Tiffany J. Callahan, Leigh C. Carmody, Daniel Danis, Marcin P. Joachimiak, Vida Ravanmehr, Emily R. Pfaff, James Champion, Kimberly Robasky, Hao Xu, Karamarie Fecho, Nephi A. Walton, Richard L. Zhu, Justin Ramsdill, Christopher J. Mungall, Sebastian Köhler, Melissa A. Haendel, Clement J. McDonald, Daniel J. Vreeman, David B. Peden, Tellen D. Bennett, James A. Feinstein, Blake Martin, Adrianne L. Stefanski, Lawrence E. Hunter, Christopher G. Chute, Peter N. Robinson:
Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. npj Digit. Medicine 2 (2019) - 2018
- [j70]Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group:
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. 25(10): 1375-1381 (2018) - [c152]Yizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo:
Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. BIBM 2018: 1143-1146 - [i1]Yizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo:
Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. CoRR abs/1811.06183 (2018) - 2017
- [j69]Deepak K. Sharma, Harold R. Solbrig, Cui Tao, Chunhua Weng, Christopher G. Chute, Guoqian Jiang:
Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies. J. Biomed. Semant. 8(1): 19:1-19:11 (2017) - [j68]Kavishwar B. Wagholikar, Joshua C. Mandel, Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Christopher G. Chute, Kenneth D. Mandl, Shawn N. Murphy:
SMART-on-FHIR implemented over i2b2. J. Am. Medical Informatics Assoc. 24(2): 398-402 (2017) - [c151]Casey L. Overby, Phillip Thompkins, Harold P. Lehmann, Christopher G. Chute, Jeanne Sheffield:
Value of Genetics-informed Drug Dosing Guidance in Pregnant Women: A Needs Assessment with Obstetric Healthcare Providers at Johns Hopkins. AMIA 2017 - [c150]Christopher G. Chute, Stanley M. Huff:
The Pluripotent Rendering of Clinical Data for Precision Medicine. MedInfo 2017: 337-340 - [c149]Stefan Schulz, Jean Marie Rodrigues, Alan L. Rector, Christopher G. Chute:
Interface Terminologies, Reference Terminologies and Aggregation Terminologies: A Strategy for Better Integration. MedInfo 2017: 940-944 - 2016
- [j67]Casey L. Overby, John J. Connolly, Christopher G. Chute, Joshua C. Denny, Robert R. Freimuth, Andrea L. Hartzler, Ingrid A. Holm, Shannon F. Manzi, Jyotishman Pathak, Peggy L. Peissig, Maureen E. Smith, Marc S. Williams, Brian H. Shirts, Elena M. Stoffel, Peter Tarczy-Hornoch, Carolyn Rohrer Vitek, Wendy A. Wolf, Justin Starren, Luke V. Rasmussen:
Practical considerations for implementing genomic information resources. Appl. Clin. Inform. 07(03): 870-882 (2016) - [j66]Na Hong, Jyotishman Pathak, Christopher G. Chute, Guoqian Jiang:
Developing a modular architecture for creation of rule-based clinical diagnostic criteria. BioData Min. 9: 33 (2016) - [j65]Guoqian Jiang, Julie Evans, Cory M. Endle, Harold R. Solbrig, Christopher G. Chute:
Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards. J. Biomed. Semant. 7: 10 (2016) - [j64]Thomas A. Oniki, Ning Zhuo, Calvin E. Beebe, Hongfang Liu, Joseph F. Coyle, Craig G. Parker, Harold R. Solbrig, Kyle Marchant, Vinod Kaggal, Christopher G. Chute, Stanley M. Huff:
Clinical element models in the SHARPn consortium. J. Am. Medical Informatics Assoc. 23(2): 248-256 (2016) - [j63]Guoqian Jiang, Richard C. Kiefer, Luke V. Rasmussen, Harold R. Solbrig, Huan Mo, Jennifer A. Pacheco, Jie Xu, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak:
Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. J. Biomed. Informatics 62: 232-242 (2016) - [c148]Eric Prud'hommeaux, Harold R. Solbrig, Deepak K. Sharma, Christopher G. Chute, Guoqian Jiang:
A Semantic Web RDF-based Approach for Modeling HL7 FHIR Profiles. CRI 2016 - [c147]Kavishwar B. Wagholikar, Joshua C. Mandel, Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Christopher G. Chute, Kenneth D. Mandl, Shawn N. Murphy:
Read only SMART on FHIR Façade for I2b2. CRI 2016 - 2015
- [j62]Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu:
Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. BioData Min. 8: 9 (2015) - [j61]Guoqian Jiang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute:
Mining severe drug-drug interaction adverse events using Semantic Web technologies: a case study. BioData Min. 8: 12 (2015) - [j60]Rachel L. Richesson, Christopher G. Chute:
Health information technology data standards get down to business: maturation within domains and the emergence of interoperability. J. Am. Medical Informatics Assoc. 22(3): 492-494 (2015) - [j59]María Del Carmen Legaz-García, Marcos Menárguez Tortosa, Jesualdo Tomás Fernández-Breis, Christopher G. Chute, Cui Tao:
Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes. J. Am. Medical Informatics Assoc. 22(3): 536-544 (2015) - [j58]Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris:
Desiderata for computable representations of electronic health records-driven phenotype algorithms. J. Am. Medical Informatics Assoc. 22(6): 1220-1230 (2015) - [j57]Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby:
CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J. Am. Medical Informatics Assoc. 22(6): 1231-1242 (2015) - [j56]Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber:
EHR based Genetic Testing Knowledge Base (iGTKB) Development. BMC Medical Informatics Decis. Mak. 15-S(4): S3 (2015) - [c146]Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Jennifer A. Pacheco, Enid N. H. Montague, Jie Xu, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak:
Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. AMIA 2015 - [c145]Guoqian Jiang, Harold R. Solbrig, Eric Prud'hommeaux, Cui Tao, Chunhua Weng, Christopher G. Chute:
Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach. AMIA 2015 - [c144]Alan L. Rector, James R. Campbell, Bedirhan Üstün, Christopher G. Chute, Harold R. Solbrig:
Harmonization of ICD-11 and SNOMED CT - Not just mapping! Practical and Theoretical Lessons & Benefits to Users and Implementers. AMIA 2015 - [c143]Harold R. Solbrig, Eric Prud'hommeaux, Christopher G. Chute, Guoqian Jiang:
Representing and Validating Cancer Study Metadata Standard Using RDF Shapes Expression Language. AMIA 2015 - [c142]Na Hong, Dingcheng Li, Yue Yu, Hongfang Liu, Christopher G. Chute, Guoqian Jiang:
Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing. BioNLP@IJCNLP 2015: 177-182 - [c141]Jean Marie Rodrigues, David J. Robinson, Vincenzo Della Mea, James R. Campbell, Alan L. Rector, Stefan Schulz, Hazel Brear, Bedirhan Üstün, Kent A. Spackman, Christopher G. Chute, Jane Millar, Harold R. Solbrig, Kristina Brand Persson:
Semantic Alignment between ICD-11 and SNOMED CT. MedInfo 2015: 790-794 - [c140]Na Hong, Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute:
A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL. MedInfo 2015: 1093 - [c139]Guoqian Jiang, Harold R. Solbrig, Jyotishman Pathak, Christopher G. Chute:
Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model. MedInfo 2015: 1097 - [c138]Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak:
A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. MedInfo 2015: 1098 - [c137]Na Hong, Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute:
Developing a Modular Architecture for Creation of Rule-based Clinical Diagnostic Criteria. BDM2I@ISWC 2015 - [c136]Harold R. Solbrig, Eric Prud'hommeaux, Deepak K. Sharma, Christopher G. Chute, Guoqian Jiang:
Feasibility of Modeling HL7 FHIR Profiles Using RDF Shape Expressions Language. SWAT4LS 2015: 208-209 - 2014
- [j55]Yuji Zhang, Cui Tao, Guoqian Jiang, Asha A. Nair, Jian Su, Christopher G. Chute, Hongfang Liu:
Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network. J. Biomed. Semant. 5: 33 (2014) - [j54]Kimberly Clark, Deepak K. Sharma, Rui Qin, Christopher G. Chute, Cui Tao:
A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis. J. Biomed. Semant. 5: 49 (2014) - [j53]George Hripcsak, Meryl Bloomrosen, Patti Flatley Brennan, Christopher G. Chute, James J. Cimino, Don E. Detmer, Margo Edmunds, Peter J. Embí, Melissa M. Goldstein, William Ed Hammond, Gail M. Keenan, Steven E. Labkoff, Shawn P. Murphy, Charles Safran, Stuart M. Speedie, Howard R. Strasberg, Freda Temple, Adam B. Wilcox:
Health data use, stewardship, and governance: ongoing gaps and challenges: a report from AMIA's 2012 Health Policy Meeting. J. Am. Medical Informatics Assoc. 21(2): 204-211 (2014) - [j52]Sunghwan Sohn, Cheryl Clark, Scott R. Halgrim, Sean P. Murphy, Christopher G. Chute, Hongfang Liu:
Research and applications: MedXN: an open source medication extraction and normalization tool for clinical text. J. Am. Medical Informatics Assoc. 21(5): 858-865 (2014) - [c135]Robert R. Freimuth, Kelly Wix, Qian Zhu, Mark Siska, Christopher G. Chute:
Evaluation of RxNorm for Medication Clinical Decision Support. AMIA 2014 - [c134]Peter J. Haug, Xinzi Wu, Jeffrey P. Ferraro, Guergana Savova, Stanley M. Huff, Christopher G. Chute:
Developing a Section Labeler for Clinical Documents. AMIA 2014 - [c133]Guoqian Jiang, Harold R. Solbrig, Bedirhan Üstün, Christopher G. Chute:
Lexical Term Standardization of ICD-11 Using Semantic Web Technologies. AMIA 2014 - [c132]Siddhartha Jonnalagadda, Soheil Moosavinasab, Chinmoy Nath, Dingcheng Li, Christopher G. Chute, Hongfang Liu:
An Automated Approach for Ranking Journals to Help in Clinician Decision Support. AMIA 2014 - [c131]Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams:
A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA 2014 - [c130]Chen Wang, Michael T. Zimmermann, Naresh Prodduturi, Christopher G. Chute, Guoqian Jiang:
Adverse Drug Event-based Stratification of Tumor Mutations: A Case Study of Breast Cancer Patients Receiving Aromatase Inhibitors. AMIA 2014 - [c129]Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber:
iGenetics: An Individualized Genetic Test Recommendation System Based on EHRs. AMIA 2014 - [c128]Feichen Shen, Dingcheng Li, Hongfang Liu, Yugyung Lee, Jyotishman Pathak, Christopher G. Chute, Cui Tao:
Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data. BHI 2014: 531-534 - [c127]Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber:
Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study. BIBM 2014: 574-577 - [c126]Guoqian Jiang, Harold R. Solbrig, Can Celik, Bedirhan Üstün, Christopher G. Chute:
Profiling ICD-11 Terminological Content Using the Common Terminology Services 2 (CTS2) Standard. ICBO 2014 - [c125]Vincenzo Della Mea, Omar Vuattolo, Bedirhan Üstün, Alan L. Rector, Stefan Schulz, Jean Marie Rodrigues, Kent A. Spackman, David J. Robinson, Jane Millar, James R. Campbell, Christopher G. Chute, Harold R. Solbrig, Kristina Brand Persson:
A Web-Based Tool for Development of a Common Ontology between ICD11 and SNOMED-CT. ICHI 2014: 144-148 - [c124]Stefan Schulz, Jean Marie Rodrigues, Alan L. Rector, Kent A. Spackman, James R. Campbell, Bedirhan Üstün, Christopher G. Chute, Harold R. Solbrig, Vincenzo Della Mea, Jane Millar, Kristina Brand Persson:
What's in a Class? Lessons Learnt from the ICD - SNOMED CT Harmonisation. MIE 2014: 1038-1042 - [c123]Jean Marie Rodrigues, Stefan Schulz, Alan L. Rector, Kent A. Spackman, Jane Millar, James R. Campbell, Bedirhan Üstün, Christopher G. Chute, Harold R. Solbrig, Vincenzo Della Mea, Kristina Brand Persson:
ICD-11 and SNOMED CT Common Ontology: Circulatory System. MIE 2014: 1043-1047 - [c122]Guoqian Jiang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute:
Mining Severe Drug-Drug Interaction Adverse Events Using Semantic Web Technologies: A Case Study. PAKDD Workshops 2014: 628-638 - [c121]Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu:
Cancer Based Pharmacogenomics Network for Drug Repurposing. PAKDD Workshops 2014: 639-651 - [c120]Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute:
Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches. Pacific Symposium on Biocomputing 2014: 172-182 - [c119]