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2010 – 2019
- 2017
[c53]José L. V. Mejino Jr., Landon T. Detwiler, Timothy C. Cox, James F. Brinkley:
Cross-species Mapping of Human and Mouse Craniofacial Structures. AMIA 2017- 2016
- [j26]Landon T. Detwiler, José L. V. Mejino Jr., James F. Brinkley:
From frames to OWL2: Converting the Foundational Model of Anatomy. Artif. Intell. Medicine 69: 12-21 (2016) - [c52]José Leonardo Villaraza Mejino Jr., James F. Brinkley, Timothy C. Cox, Landon Detwiler:
Multi-species Ontologies of the Craniofacial Musculoskeletal System. ICBO/BioCreative 2016 - 2015
- [c51]Landon T. Detwiler, José L. V. Mejino Jr., James F. Brinkley:
Converting the Foundational Model of Anatomy to OWL2. AMIA 2015 - 2014
- [j25]B. Nolan Nichols
, José L. V. Mejino Jr., Landon Detwiler, Trond T. Nilsen, Maryann E. Martone, Jessica A. Turner, Daniel L. Rubin, James F. Brinkley:
Neuroanatomical domain of the foundational model of anatomy ontology. J. Biomed. Semant. 5: 1 (2014) - 2013
- [c50]José L. V. Mejino Jr., Ravensara S. Travillian, Timothy C. Cox, Linda G. Shapiro, James F. Brinkley:
Human Development Domain of the Ontology of Craniofacial Development and Malformation. ICBO 2013: 74-77 - 2012
- [j24]Shane Steinert-Threlkeld, Siamak Ardekani, José L. V. Mejino Jr., Landon Detwiler, James F. Brinkley, Michael Halle, Ron Kikinis, Raimond L. Winslow, Michael I. Miller, J. Tilak Ratnanather:
Ontological labels for automated location of anatomical shape differences. J. Biomed. Informatics 45(3): 522-527 (2012) - [j23]James F. Brinkley, Landon Detwiler:
A Query Integrator and Manager for the Query Web. J. Biomed. Informatics 45(5): 975-991 (2012) - [c49]Ida Sim, Simona Carini, Samson W. Tu, Landon Detwiler, James F. Brinkley, Shamin Mollah, Karl Burke, Harold P. Lehmann, Swati Chakraborty, Knut M. Wittkowski, Brad Pollock, Thomas Johnson, Vojtech Huser:
Ontology-Based Federated Data Access to Human Studies Information. AMIA 2012 - [c48]Marianne Shaw, Landon Detwiler, James F. Brinkley, Dan Suciu:
A Dataflow Graph Transformation Language and Query Rewriting System for RDF Ontologies. SSDBM 2012: 544-561 - 2011
- [j22]Marianne Shaw, Landon Fridman Detwiler, Natalya Fridman Noy, James F. Brinkley, Dan Suciu:
vSPARQL: A view definition language for the semantic web. J. Biomed. Informatics 44(1): 102-117 (2011) - [j21]Joshua D. Franklin, Alicia F. Guidry, James F. Brinkley:
A partnership approach for Electronic Data Capture in small-scale clinical trials. J. Biomed. Informatics 44(Supplement-1): S103-S108 (2011) - [c47]B. Nolan Nichols, José L. V. Mejino Jr., James F. Brinkley:
The Foundational Model of Neuroanatomy Ontology: An Ontology Framework to Support Neuroanatomical Data Integration. ICBO 2011 - [c46]Shane Steinert-Threlkeld, Siamak Ardekani, José L. V. Mejino Jr., Landon Detwiler, James F. Brinkley, Michael Halle, Ron Kikinis, Raimond L. Winslow, Michael I. Miller, J. Tilak Ratnanather:
Ontological Labels for Automated Location of Left Ventricular Remodeling. ICSC 2011: 572-573 - 2010
- [j20]Jessica A. Turner, José L. V. Mejino Jr., James F. Brinkley, Landon T. Detwiler, Hyo Jong Lee, Maryann E. Martone, Daniel L. Rubin:
Application of neuroanatomical ontologies for neuroimaging data annotation. Frontiers Neuroinformatics 4: 10 (2010)
2000 – 2009
- 2009
- [j19]Landon T. Detwiler, Dan Suciu, Joshua D. Franklin, Eider B. Moore, Andrew V. Poliakov, Eunjung Lee, David P. Corina, George A. Ojemann, James F. Brinkley:
Distributed XQuery-based integration and visualization of multimodality brain mapping data. Frontiers Neuroinformatics 3: 2 (2009) - [j18]Ira J. Kalet, José L. V. Mejino Jr., Vania Wang, Mark Whipple, James F. Brinkley:
Content-specific auditing of a large scale anatomy ontology. J. Biomed. Informatics 42(3): 540-549 (2009) - [c45]Rosalia F. Tungaraza, J. Guan, S. M. Rolfe, Indriyati Atmosukarto, Andrew V. Poliakov, Natalia M. Kleinhans, Elizabeth H. Aylward, Jeffrey G. Ojemann, James F. Brinkley, Linda G. Shapiro:
A similarity retrieval method for functional magnetic resonance imaging (fMRI) statistical maps. Medical Imaging: Image Processing 2009: 72590E - [c44]S. M. Rolfe, L. Finney, Rosalia F. Tungaraza, J. Guan, Linda G. Shapiro, James F. Brinkley, Andrew V. Poliakov, Natalia M. Kleinhans, E. Alyward:
An independent component analysis based tool for exploring functional connections in the brain. Medical Imaging: Image Processing 2009: 725921 - 2008
- [c43]Landon Detwiler, Dan Suciu, James F. Brinkley:
Regular Paths in SparQL: Querying the NCI Thesaurus. AMIA 2008 - [c42]José L. V. Mejino Jr., Daniel L. Rubin, James F. Brinkley:
FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology. AMIA 2008 - [c41]Marianne Shaw, Landon Detwiler, James F. Brinkley, Dan Suciu:
Generating Application Ontologies from Reference Ontologies. AMIA 2008 - 2007
- [j17]Eider B. Moore, Andrew V. Poliakov, Peter Lincoln, James F. Brinkley:
MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data. BMC Bioinform. 8 (2007) - [j16]Nicholas R. Anderson, E. Sally Lee, J. Scott Brockenbrough, Mark E. Minie, Sherrilynne S. Fuller, James F. Brinkley, Peter Tarczy-Hornoch:
Research Paper: Issues in Biomedical Research Data Management and Analysis: Needs and Barriers. J. Am. Medical Informatics Assoc. 14(4): 478-488 (2007) - [j15]Andrew V. Poliakov, Xenia Hertzenberg, Eider B. Moore, David P. Corina, George A. Ojemann, James F. Brinkley:
Unobtrusive integration of data management with fMRI analysis. Neuroinformatics 5(1): 3-10 (2007) - [c40]Xiang Li, John H. Gennari, James F. Brinkley:
XGI: A Graphical Interface for XQuery Creation. AMIA 2007 - [c39]Gary Yngve, James F. Brinkley, Daniel L. Cook, Linda G. Shapiro:
A Model Browser for Biosimulation. AMIA 2007 - 2006
- [c38]James F. Brinkley, Dan Suciu, Landon Detwiler, John H. Gennari, Cornelius Rosse:
A framework for using reference ontologies as a foundation for the semantic web. AMIA 2006 - [c37]Landon Detwiler, James F. Brinkley:
Custom Views of Reference Ontologies. AMIA 2006 - [c36]Christine Fong, James F. Brinkley:
Customizable Electronic Laboratory Online (CELO): A Web-based Data Management System Builder for Biomedical Research Laboratories. AMIA 2006 - [c35]Hao Li, John H. Gennari, James F. Brinkley:
Model Driven Laboratory Information Management Systems. AMIA 2006 - [c34]Wayne Warren, Augusto V. Agoncillo, Joshua D. Franklin, James F. Brinkley:
Intelligent Web-based Whole Body Visualization for Anatomy Education. AMIA 2006 - 2005
- [j14]Linda G. Shapiro, Emily Chung, Landon Detwiler, José L. V. Mejino Jr., Augusto V. Agoncillo, James F. Brinkley, Cornelius Rosse:
Application of Information Technology: Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base. J. Am. Medical Informatics Assoc. 12(1): 35-46 (2005) - [j13]Andrew V. Poliakov, Evan Albright, Kevin P. Hinshaw, David P. Corina, George A. Ojemann, Richard F. Martin, James F. Brinkley:
Application of Information Technology: Server-based Approach to Web Visualization of Integrated Three-dimensional Brain Imaging Data. J. Am. Medical Informatics Assoc. 12(2): 140-151 (2005) - [c33]Sophia Jeng, Kelan Wang, Janos Barbero, James F. Brinkley, Peter Tarczy-Hornoch:
A Pilot Bridging Data Integration and Analytics: BioMediator and R? AMIA 2005 - [c32]E. Sally Lee, Dan Suciu, James F. Brinkley:
Automatic XQuery Generation and Generalized Visualization for an XML Interface to a Relational Database. AMIA 2005 - [c31]Kelan Wang, Peter Tarczy-Hornoch, Ron Shaker, Peter Mork, James F. Brinkley:
BioMediator Data Integration: Beyond Genomics to Neuroscience Data. AMIA 2005 - [c30]Wayne Warren, James F. Brinkley:
Knowledge-Based, Interactive, Custom Anatomical Scene Creation for Medical Education: The Biolucida System. AMIA 2005 - [c29]Nathan Bales, James F. Brinkley, E. Sally Lee, Shobhit Mathur, Christopher Ré, Dan Suciu:
A Framework for XML-Based Integration of Data, Visualization and Analysis in a Biomedical Domain. XSym 2005: 207-221 - 2004
- [c28]Landon T. Detwiler, Emily Chung, Ann Li, José L. V. Mejino Jr., Augusto V. Agoncillo, James F. Brinkley, Cornelius Rosse, Linda G. Shapiro:
A Relation-Centric Query Engine for the Foundational Model of Anatomy. MedInfo 2004: 341-345 - 2003
- [j12]Peter Mork, James F. Brinkley, Cornelius Rosse:
OQAFMA Querying Agent for the Foundational Model of Anatomy: a prototype for providing flexible and efficient access to large semantic networks. J. Biomed. Informatics 36(6): 501-517 (2003) - [j11]Daniel Gardner, Arthur W. Toga, Giorgio A. Ascoli, Jackson T. Beatty, James F. Brinkley, Anders M. Dale, Peter T. Fox, Esther P. Gardner, John S. George, Nigel H. Goddard, Kristen M. Harris, Edward Herskovits, Michael L. Hines, Gwen A. Jacobs, Russell E. Jacobs, Edward G. Jones, David N. Kennedy, Daniel Y. Kimberg, John C. Mazziotta, Perry L. Miller, Susumu Mori, David C. Mountain, Allan L. Reiss, Glenn D. Rosen, David A. Rottenberg, Gordon M. Shepherd, Neil R. Smalheiser, Kenneth P. Smith, Tom Strachan, David C. Van Essen, Robert W. Williams, Stephen T. C. Wong:
Towards effective and rewarding data sharing. Neuroinformatics 1(3): 289-295 (2003) - [c27]Landon T. Detwiler, José L. V. Mejino Jr., Cornelius Rosse, James F. Brinkley:
Efficient Web-Based Navigation of the Foundational Model of Anatomy. AMIA 2003 - [c26]Gregory Distelhorst, Vishrut Srivastava, Cornelius Rosse, James F. Brinkley:
A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy. AMIA 2003 - [c25]Richard F. Martin, Kurt L. Rickard, José L. V. Mejino Jr., Augusto V. Agoncillo, James F. Brinkley, Cornelius Rosse:
The Evolving Neuroanatomical Component of the Foundational Model of Anatomy. AMIA 2003 - [c24]Zhengming Tang, Yana Kadiyska, Hao Li, Dan Suciu, James F. Brinkley:
Dynamic XML-Based Exchange of Relational Data: Application to the Human Brain Project. AMIA 2003 - 2002
- [j10]Rex M. Jakobovits, Cornelius Rosse, James F. Brinkley:
Application of Information Technology: WIRM: An Open Source Toolkit for Building Biomedical Web Applications. J. Am. Medical Informatics Assoc. 9(6): 557-570 (2002) - [j9]Kevin P. Hinshaw, Andrew V. Poliakov, Eider B. Moore, Richard F. Martin, Linda G. Shapiro, James F. Brinkley:
Shape-Based Cortical Surface Segmentation for Visualization Brain Mapping. NeuroImage 16(2): 295-316 (2002) - [c23]James F. Brinkley, Rex M. Jakobovits, Cornelius Rosse:
An Online Image Management System for Anatomy Teaching. AMIA 2002 - [c22]Peter Mork, Dan Suciu, James F. Brinkley, Cornelius Rosse:
A Declarative Query Interface for Large Semantic Networks. AMIA 2002 - 2001
- [c21]Rex M. Jakobovits, James F. Brinkley, Cornelius Rosse, Ed Weinberger:
Enabling clinicians, researchers, and educators to build custom web-based biomedical information systems. AMIA 2001 - [c20]Richard F. Martin, José L. V. Mejino Jr., Douglas M. Bowden, James F. Brinkley, Cornelius Rosse:
Foundational model of neuroanatomy: implications for the Human Brain Project. AMIA 2001 - [c19]José L. V. Mejino Jr., Natalya Fridman Noy, Mark A. Musen, James F. Brinkley, Cornelius Rosse:
Representation of Structural Relationships in the Foundational Model of Anatomy. AMIA 2001 - [c18]Andrew V. Poliakov, Evan Albright, David P. Corina, George A. Ojemann, Richard F. Martin, James F. Brinkley:
Server-based approach to web visualization of integrated 3-D medical image data. AMIA 2001 - 2000
- [c17]Rex M. Jakobovits, Stephen Soderland, Ricky K. Taira, James F. Brinkley:
Requirements of a Web-based experiment management system. AMIA 2000 - [c16]William B. Lober, James F. Brinkley:
A Personal Annotated Image Server. AMIA 2000
1990 – 1999
- 1999
- [j8]James F. Brinkley, Benjamin A. Wong, Kevin P. Hinshaw, Cornelius Rosse:
Design of an Anatomy Information System. IEEE Computer Graphics and Applications 19(3): 38-48 (1999) - [c15]Jin S. Hahn, Elizabeth S. Burnside, James F. Brinkley, Cornelius Rosse, Mark A. Musen:
Representing the Digital Anatomist Foundational Model as a Protege Ontology. AMIA 1999 - [c14]Ira J. Kalet, Jonn Wu, Matthew Lease, Mary M. Austin-Seymour, James F. Brinkley, Cornelius Rosse:
Anatomical information in radiation treatment planning. AMIA 1999 - [c13]Sara Kim, James F. Brinkley, Cornelius Rosse:
Design features of on-line anatomy information resources: a comparison with the Digital Anatomist. AMIA 1999 - [c12]William B. Lober, James F. Brinkley:
A Portable Image Annotation Tool for Web-based Anatomy Atlases. AMIA 1999 - [c11]Andrew V. Poliakov, Kevin P. Hinshaw, Cornelius Rosse, James F. Brinkley:
Integration and visualization of multimodality brain data for language mapping. AMIA 1999 - [c10]Benjamin A. Wong, Cornelius Rosse, James F. Brinkley:
Semi-automatic scene generation using the Digital Anatomist Foundational Model. AMIA 1999 - 1998
- [j7]Cornelius Rosse, José L. V. Mejino Jr., Bharath R. Modayur, Rex M. Jakobovits, Kevin P. Hinshaw, James F. Brinkley:
Research Paper: Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base. J. Am. Medical Informatics Assoc. 5(1): 17-40 (1998) - [c9]James F. Brinkley, Cornelius Rosse:
Requirements for an on-line knowledge-based anatomy information system. AMIA 1998 - [c8]Kevin P. Hinshaw, James F. Brinkley:
Incorporating constraint-based shape models into an interactive system for functional brain mapping. AMIA 1998 - [c7]Rex M. Jakobovits, James F. Brinkley:
Query-by-Context: A Framework for Modeling and Navigating Multimedia Research. AMIA 1998 - [c6]Cornelius Rosse, Linda G. Shapiro, James F. Brinkley:
The digital anatomist foundational model: principles for defining and structuring its concept domain. AMIA 1998 - [c5]Benjamin A. Wong, James F. Brinkley:
Dynamic 3-D Scene Navigation in Web-Based Anatomy Atlases. AMIA 1998 - 1997
- [j6]James F. Brinkley, Cornelius Rosse:
Synthesis of Research: The Digital Anatomist Distributed Framework and Its Applications to Knowledge-based Medical Imaging. J. Am. Medical Informatics Assoc. 4(3): 165-183 (1997) - [j5]James F. Brinkley, Jeffrey S. Prothero:
Slisp: A Flexible Software Toolkit for Hybrid, Embedded and Distributed Applications. Softw. Pract. Exp. 27(1): 33-48 (1997) - [c4]Kevin P. Hinshaw, James F. Brinkley:
Using 3-D shape models to guide segmentation of MR brain images. AMIA 1997 - [c3]Rex M. Jakobovits, James F. Brinkley:
Managing medical research data with a Web-Interfacing Repository Manager. AMIA 1997 - [c2]Bharath R. Modayur, Rex M. Jakobovits, Kenneth Maravilla, George A. Ojemann, James F. Brinkley:
Evaluation of a visualization-based approach to functional brain mapping. AMIA 1997 - 1996
- [j4]D. J. Dailey, James F. Brinkley:
A metric for quantifying response time in a browser application. IEEE Trans. Syst. Man Cybern. Part A 26(2): 271-275 (1996) - [j3]Rex M. Jakobovits, Lara M. Lewis, James P. Ahrens, Linda G. Shapiro, Steven L. Tanimoto, James F. Brinkley:
A Visual Database Environment for Scientific Research. J. Vis. Lang. Comput. 7(4): 361-375 (1996)
1980 – 1989
- 1988
- [j2]James F. Brinkley, Russ B. Altman, Bruce S. Duncan, Bruce G. Buchanan, Oleg Jardetzky:
Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562. J. Chem. Inf. Comput. Sci. 28(4): 194-210 (1988) - 1986
- [c1]Barbara Hayes-Roth, Bruce G. Buchanan, Olivier Lichtarge, Mike Hewitt, Russ B. Altman, James F. Brinkley, Craig Cornelius, Bruce S. Duncan, Oleg Jardetzky:
PROTEAN: Deriving Protein Structure from Constraints. AAAI 1986: 904-909 - 1985
- [j1]James F. Brinkley:
Knowledge-Driven Ultrasonic Three-Dimensional Organ Modeling. IEEE Trans. Pattern Anal. Mach. Intell. 7(4): 431-441 (1985)
Coauthor Index
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