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Bernard de Bono
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2020 – today
- 2022
- [j12]Monique Surles-Zeigler, Troy Sincomb, Thomas H. Gillespie, Bernard de Bono, Jacqueline Bresnahan, Gary M. Mawe, Jeffrey S. Grethe, Susan J. Tappan, Maci L. Heal, Maryann E. Martone:
Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project. Frontiers Neuroinformatics 16 (2022) - [c9]Michelle G. Giglio, Suvarna Nadendla, Arthur Brady, Amanda Charbonneau, Karl Czajkowski, Jeremy Yang, Tom Gillespie, Philippe Rocca-Serra, Jeffrey S. Grethe, Raja Mazumder, Bernard de Bono, Jonathan C. Silverstein, Daniel Clark, Mark A. Musen, Owen White:
Data Harmonization through Use of Community Standards in the Common Fund Data Ecosystem. ICBO 2022: 1-7 - 2021
- [j11]Natallia Kokash, Bernard de Bono:
Knowledge Representation for Multi-Scale Physiology Route Modeling. Frontiers Neuroinformatics 15: 560050 (2021)
2010 – 2019
- 2019
- [j10]Dewan M. Sarwar, Reza Kalbasi, John H. Gennari, Brian E. Carlson, Maxwell Lewis Neal, Bernard de Bono, Koray Atalag, Peter J. Hunter, David P. Nickerson:
Model annotation and discovery with the Physiome Model Repository. BMC Bioinform. 20(1): 457:1-457:10 (2019) - 2017
- [j9]Honghan Wu, Anika Oellrich, Christine Girges, Bernard de Bono, Tim J. P. Hubbard, Richard J. B. Dobson:
Automated PDF highlighting to support faster curation of literature for Parkinson's and Alzheimer's disease. Database J. Biol. Databases Curation 2017: bax027 (2017) - 2014
- [c8]Natallia Kokash, Bernard de Bono, Joost N. Kok:
Template-based Treemaps to Preserve Spatial Constraints. IVAPP 2014: 39-49 - [c7]Georgios S. Stamatakos, Dimitra D. Dionysiou, Fay Misichroni, Norbert M. Graf, Stefaan W. Van Gool, Rainer Bohle, Feng Dong, Marco Viceconti, Kostas Marias, Vangelis Sakkalis, Nikolaus Forgó, Ravi Radhakrishnan, Helen M. Byrne, Caterina Guiot, Philippe Büchler, Elias Neri, Anca I. D. Bucur, Bernard de Bono, Debora Testi, Manolis Tsiknakis:
Computational horizons in cancer (CHIC): Developing meta- and hyper-multiscale models and repositories for in Silico Oncology - A brief technical outline of the project. IARWISOI 2014: 1-5 - [c6]Bernard de Bono, Pierre Grenon, Michiel Helvensteijn, Joost N. Kok, Natallia Kokash:
ApiNATOMY: Towards Multiscale Views of Human Anatomy. IDA 2014: 72-83 - 2013
- [j8]Bernard de Bono, Pierre Grenon, Richard A. Baldock, Peter Hunter:
Functional tissue units and their primary tissue motifs in multi-scale physiology. J. Biomed. Semant. 4: 22 (2013) - [j7]Michaela Gündel, Erfan Younesi, Ashutosh Malhotra, Jiali Wang, Hui Li, Bijun Zhang, Bernard de Bono, Heinz-Theodor Mevissen, Martin Hofmann-Apitius:
HuPSON: the human physiology simulation ontology. J. Biomed. Semant. 4: 35 (2013) - [j6]Pierre Grenon, Bernard de Bono:
Eliciting candidate anatomical routes for protein interactions: a scenario from endocrine physiology. BMC Bioinform. 14: 131 (2013) - 2012
- [j5]Sarala M. Wimalaratne, Pierre Grenon, Robert Hoehndorf, Georgios V. Gkoutos, Bernard de Bono:
An infrastructure for ontology-based information systems in biomedicine: RICORDO case study. Bioinform. 28(3): 448-450 (2012) - 2011
- [j4]Robert Hoehndorf, Michel Dumontier, John H. Gennari, Sarala M. Wimalaratne, Bernard de Bono, Daniel L. Cook, Georgios V. Gkoutos:
Integrating systems biology models and biomedical ontologies. BMC Syst. Biol. 5: 124 (2011) - [c5]Bernard de Bono, Stephen John Sammut, Pierre Grenon:
Achieving Semantic Interoperability between Physiology Models and Clinical Data. e-Science Workshops 2011: 135-142 - [c4]Pierre Grenon, Sarala M. Wimalaratne, Bernard de Bono:
Ontology-Strength Industry Standards: The Case of the Clinical Trial Domain. FOMI 2011: 41-49 - [c3]Pierre Grenon, Bernard de Bono:
Logic-Based Representation of Connectivity Routes in the Immune System. ICARIS 2011: 30-43 - [c2]Anna Maria Masci, Jeffrey Roach, Bernard de Bono, Pierre Grenon, Lindsay G. Cowell:
Bridging Multiple Ontologies: Representation of the Liver Immune Response. ICBO 2011
2000 – 2009
- 2009
- [j3]Lisa Matthews, Gopal Gopinath, Marc Gillespie, Michael Caudy, David Croft, Bernard de Bono, Phani V. Garapati, Jill Hemish, Henning Hermjakob, Bijay Jassal, Alexander Kanapin, Suzanna Lewis, Shahana Mahajan, Bruce May, Esther Schmidt, Imre Vastrik, Guanming Wu, Ewan Birney, Lincoln Stein, Peter D'Eustachio:
Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res. 37(Database-Issue): 619-622 (2009) - 2007
- [j2]Bernard de Bono, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Gopal Gopinath, David Croft, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein:
Reactome: An integrated expert model of human molecular processes and access toolkit. J. Integr. Bioinform. 4(3) (2007) - 2006
- [c1]Esther Schmidt, Ewan Birney, David Croft, Bernard de Bono, Peter D'Eustachio, Marc Gillespie, Gopal Gopinath, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Lincoln Stein, Imre Vastrik, Guanming Wu:
Reactome - A Knowledgebase of Biological Pathways. OTM Workshops (1) 2006: 710-719 - 2005
- [j1]G. Joshi-Tope, Marc Gillespie, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Bernard de Bono, Bijay Jassal, Gopal R. Gopinath, G. R. Wu, Lisa Matthews, Suzanna Lewis, Ewan Birney, Lincoln Stein:
Reactome: a knowledgebase of biological pathways. Nucleic Acids Res. 33(Database-Issue): 428-432 (2005)
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