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ORCIDNucleic Acids Research, Volume 37
Volume 37, Number Database-Issue, January 2009
- Michael Y. Galperin
, Guy Cochrane:
Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009. 1-4 - Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. 5-15 - Hideaki Sugawara, Kazuho Ikeo, Satoshi Fukuchi, Takashi Gojobori, Yoshio Tateno:
DDBJ dealing with mass data produced by the second generation sequencer. 16-18 - Guy Cochrane, Ruth Akhtar, James K. Bonfield, Lawrence Bower, Fehmi Demiralp, Nadeem Faruque, Richard Gibson, Gemma Hoad, Tim J. P. Hubbard, Christopher I. Hunter, Mikyung Jang, Szilveszter Juhos, Rasko Leinonen, Steven Leonard, Quan Lin, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Sheila Plaister, Rajesh Radhakrishnan, Stephen Robinson, Siamak Sobhany, Petra ten Hoopen, Robert Vaughan, Vadim Zalunin, Ewan Birney:
Petabyte-scale innovations at the European Nucleotide Archive. 19-25 - Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers:
GenBank. 26-31 - Kim D. Pruitt, Tatiana A. Tatusova, William Klimke, Donna R. Maglott:
NCBI Reference Sequences: current status, policy and new initiatives. 32-36 - Maik Friedel, Swetlana Nikolajewa, Jürgen Sühnel, Thomas Wilhelm:
DiProDB: a database for dinucleotide properties. 37-40 - Cristian Taccioli, Enrica Fabbri, Rosa Visone, Stefano Volinia, George A. Calin, Louise Y. Fong, Roberto Gambari, Arianna Bottoni, Mario Acunzo, John Hagan, Marilena V. Iorio, Claudia Piovan, Giulia Romano, Carlo Maria Croce:
UCbase & miRfunc: a database of ultraconserved sequences and microRNA function. 41-48 - Budrul Ahsan, Taro L. Saito, Shin-ichi Hashimoto, Keigo Muramatsu, Manabu Tsuda, Atsushi Sasaki, Kouji Matsushima, Toshiro Aigaki, Shinichi Morishita:
MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database. 49-53 - Elodie Portales-Casamar, David J. Arenillas, Jonathan S. Lim, Magdalena I. Swanson, Steven Jiang, Anthony McCallum, Stefan Kirov, Wyeth W. Wasserman:
The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences. 54-60 - Andreas Grote, Johannes Klein, Ida Retter, Isam Haddad, Susanne Behling, Boyke Bunk, Ilona Biegler, Svitlana Yarmolinetz, Dieter Jahn, Richard Münch:
PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes. 61-65 - Logan Everett, Antony Vo, Sridhar Hannenhalli:
PTM-Switchboard - a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. 66-71 - Grant H. Jacobs, Augustine Chen, Stewart G. Stevens, Peter A. Stockwell, Michael A. Black, Warren Tate, Chris M. Brown:
Transterm: a database to aid the analysis of regulatory sequences in mRNAs. 72-76 - Daniel E. Newburger, Martha L. Bulyk:
UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. 77-82 - Yurong Xin, Wilma K. Olson:
BPS: a database of RNA base-pair structures. 83-88 - Toutai Mituyama, Kouichirou Yamada, Emi Hattori, Hiroaki Okida, Yukiteru Ono, Goro Terai, Aya Yoshizawa, Takashi Komori, Kiyoshi Asai:
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs. 89-92 - Patricia P. Chan, Todd M. Lowe:
GtRNAdb: a database of transfer RNA genes detected in genomic sequence. 93-97 - Qinghua Jiang, Yadong Wang, Yangyang Hao, Liran Juan, Mingxiang Teng, Xinjun Zhang, Meimei Li, Guohua Wang, Yunlong Liu:
miR2Disease: a manually curated database for microRNA deregulation in human disease. 98-104 - Feifei Xiao, Zhixiang Zuo, Guoshuai Cai, Shuli Kang, Xiaolian Gao, Tongbin Li:
miRecords: an integrated resource for microRNA-target interactions. 105-110 - Daniel Gerlach, Evgenia V. Kriventseva, Nazim Rahman, Charles E. Vejnar, Evgeni M. Zdobnov:
miROrtho: computational survey of microRNA genes. 111-117 - Anna Czerwoniec, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Katarzyna H. Kaminska, Joanna M. Kasprzak, Janusz M. Bujnicki, Henri Grosjean, Kristian Rother:
MODOMICS: a database of RNA modification pathways, update 2008. 118-121 - Marcel E. Dinger, Ken C. Pang, Tim R. Mercer, Mark L. Crowe, Sean M. Grimmond, John S. Mattick:
NRED: a database of long noncoding RNA expression. 122-126 - Michela Taufer, Abel Licon, Roberto Araiza, David Mireles, F. H. D. van Batenburg, Alexander P. Gultyaev, Ming-Ying Leung:
PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots. 127-135 - Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman:
Rfam: updates to the RNA families database. 136-140 - James R. Cole, Qiong Wang, E. Cardenas, Jordan A. Fish, Benli Chai, Ryan J. Farris, A. S. Kulam-Syed-Mohideen, Donna M. McGarrell, Terry L. Marsh, George M. Garrity, James M. Tiedje:
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. 141-145 - Yongliang Ren, Wuming Gong, Haiyan Zhou, Yejun Wang, Feifei Xiao, Tongbin Li:
siRecords: a database of mammalian RNAi experiments and efficacies. 146-149 - Hsi-Yuan Huang, Heng-Yi Chang, Chih-Hung Chou, Ching-Ping Tseng, Shinn-Ying Ho, Chi-Dung Yang, Yih-Wei Ju, Hsien-Da Huang:
sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. 150-154 - Giorgos L. Papadopoulos, Martin Reczko, Victor A. Simossis, Praveen Sethupathy, Artemis G. Hatzigeorgiou:
The database of experimentally supported targets: a functional update of TarBase. 155-158 - Frank Jühling, Mario Mörl, Roland K. Hartmann, Mathias Sprinzl, Peter F. Stadler, Joern Pütz:
tRNAdb 2009: compilation of tRNA sequences and tRNA genes. 159-162 - Takashi Abe, Toshimichi Ikemura, Yasuo Ohara, Hiroshi Uehara, Makoto Kinouchi, Shigehiko Kanaya, Yuko Yamada, Akira Muto, Hachiro Inokuchi:
tRNADB-CE: tRNA gene database curated manually by experts. 163-168 - The Universal Protein Resource (UniProt) 2009. 169-174
- Rubén Nogales-Cadenas, Federico Abascal, Javier Díez-Pérez, José María Carazo, Alberto D. Pascual-Montano:
CentrosomeDB: a human centrosomal proteins database. 175-180 - Yasmeen Ahmad, François-Michel Boisvert, Peter Gregor, Andy Cobley, Angus I. Lamond:
NOPdb: Nucleolar Proteome Database - 2008 update. 181-184 - Sanguthevar Rajasekaran, Sudha Balla, Patrick Gradie, Michael R. Gryk, Krishna Kadaveru, Vamsi Kundeti, Mark W. Maciejewski, Tian Mi, Nicholas Rubino, Jay Vyas, Martin R. Schiller:
Minimotif miner 2nd release: a database and web system for motif search. 185-190 - Jason E. Donald, Eugene I. Shakhnovich:
SDR: a database of predicted specificity-determining residues in proteins. 191-194 - Raphael André Bauer, Stefan Günther, Dominic Jansen, Carolin Heeger, Paul Florian Thaben, Robert Preissner:
SuperSite: dictionary of metabolite and drug binding sites in proteins. 195-200 - M. Michael Gromiha, Yukimitsu Yabuki, M. Xavier Suresh, A. Mary Thangakani, Makiko Suwa, Kazuhiko Fukui:
TMFunction: database for functional residues in membrane proteins. 201-204 - Aron Marchler-Bauer, John B. Anderson, Farideh Chitsaz, Myra K. Derbyshire, Carol DeWeese-Scott, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Asba Tasneem, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Naigong Zhang, Stephen H. Bryant:
CDD: specific functional annotation with the Conserved Domain Database. 205-210 - Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats:
InterPro: the integrative protein signature database. 211-215 - William Klimke, Richa Agarwala, Azat Badretdin, Slava Chetvernin, Stacy Ciufo, Boris Fedorov, Boris Kiryutin, Kathleen O'Neill, Wolfgang Resch, Sergei Resenchuk, Susan Schafer, Igor Tolstoy, Tatiana A. Tatusova:
The National Center for Biotechnology Information's Protein Clusters Database. 216-223 - Abraham O. Samson, Michael Levitt:
Protein segment finder: an online search engine for segment motifs in the PDB. 224-228 - Ivica Letunic, Tobias Doerks, Peer Bork:
SMART 6: recent updates and new developments. 229-232 - Brandi L. Cantarel, Pedro M. Coutinho, Corinne Rancurel, Thomas Bernard, Vincent Lombard, Bernard Henrissat:
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. 233-238 - Víctor Quesada, Gonzalo R. Ordóñez, Luis M. Sánchez, Xose S. Puente, Carlos López-Otín:
The Degradome database: mammalian proteases and diseases of proteolysis. 239-243 - David M. A. Martin, Diego Miranda-Saavedra, Geoffrey J. Barton:
Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases. 244-250 - Chuan-Yun Li, Qing-Rong Liu, Ping-Wu Zhang, Xiao-Mo Li, Liping Wei, George R. Uhl:
OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules. 251-260 - Dominique Koua, Lorenzo Cerutti, Laurent Falquet, Christian J. A. Sigrist, Grégory Theiler, Nicolas Hulo, Christophe Dunand:
PeroxiBase: a database with new tools for peroxidase family classification. 261-266 - Guohui Ding, Peter Lorenz, Michael Kreutzer, Yixue Li, Hans-Jürgen Thiesen:
SysZNF: the C2H2 zinc finger gene database. 267-273 - Milton H. Saier Jr., Ming Ren Yen, Keith Noto, Dorjee G. Tamang, Charles Elkan:
The Transporter Classification Database: recent advances. 274-278 - Fengli Fu, Jeffry D. Sander, Morgan L. Maeder, Stacey Thibodeau-Beganny, J. Keith Joung, Drena Dobbs, Leslie L. Miller, Daniel F. Voytas:
Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays. 279-283 - Joel Masciocchi, Gianfranco Frau, Marco Fanton, Mattia Sturlese, Matteo Floris, Luca Pireddu, Piergiorgio Palla, Fabian Cedrati, Patricia Rodriguez-Tomé, Stefano Moro:
MMsINC: a large-scale chemoinformatics database. 284-290 - Mathias Dunkel, Ulrike Schmidt, Swantje Struck, Lena Berger, Björn A. Grüning, Julia Hossbach, Ines S. Jaeger, Uta Effmert, Birgit Piechulla, Roger Eriksson, Jette Knudsen, Robert Preissner:
SuperScent - a database of flavors and scents. 291-294 - Ulrike Schmidt, Swantje Struck, Björn A. Grüning, Julia Hossbach, Ines S. Jaeger, Roza Parol, Ulrike Lindequist, Eberhard Teuscher, Robert Preissner:
SuperToxic: a comprehensive database of toxic compounds. 295-299 - Amelie Stein, Alejandro Panjkovich, Patrick Aloy:
3did Update: domain-domain and peptide-mediated interactions of known 3D structure. 300-304 - Masafumi Shionyu, Akihiro Yamaguchi, Kazuki Shinoda, Ken-ichi Takahashi, Mitiko Go:
AS-ALPS: a database for analyzing the effects of alternative splicing on protein structure, interaction and network in human and mouse. 305-309 - Alison L. Cuff, Ian Sillitoe, Tony E. Lewis, Oliver Redfern, Richard Garratt, Janet M. Thornton, Christine A. Orengo:
The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies. 310-314 - Oliver D. Testa, Efrosini Moutevelis, Derek N. Woolfson:
CC+: a relational database of coiled-coil structures. 315-322 - Ofir Goldenberg, Elana Erez, Guy Nimrod, Nir Ben-Tal:
The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures. 323-327 - Wei-Cheng Lo, Chi-Ching Lee, Che-Yu Lee, Ping-Chiang Lyu:
CPDB: a database of circular permutation in proteins. 328-332 - Satoshi Fukuchi, Keiichi Homma, Shigetaka Sakamoto, Hideaki Sugawara, Yoshio Tateno, Takashi Gojobori, Ken Nishikawa:
The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions. 333-337 - Stefan Günther, Joachim von Eichborn, Patrick May, Robert Preissner:
JAIL: a structure-based interface library for macromolecules. 338-341 - Natalya S. Bogatyreva, Alexander A. Osypov, Dmitry N. Ivankov:
KineticDB: a database of protein folding kinetics. 342-346 - Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali:
MODBASE, a database of annotated comparative protein structure models and associated resources. 347-354 - Roman A. Laskowski:
PDBsum new things. 355-359 - Miho Higurashi, Takashi Ishida, Kengo Kinoshita:
PiSite: a database of protein interaction sites using multiple binding states in the PDB. 360-364 - Helen M. Berman, John D. Westbrook, Margaret J. Gabanyi, Wendy Tao, Raship Shah, Andrei Kouranov, Torsten Schwede, Konstantin Arnold, Florian Kiefer, Lorenza Bordoli, Jürgen Kopp, Michael Podvinec, Paul D. Adams, Lester G. Carter, Wladek Minor, Rajesh Nair, Joshua La Baer:
The protein structure initiative structural genomics knowledgebase. 365-368 - Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. 369-373 - Mathieu Lonquety, Zoé Lacroix, Nikolaos Papandreou, Jacques Chomilier:
SPROUTS: a database for the evaluation of protein stability upon point mutation. 374-379 - Derek Wilson, Ralph Pethica, Yiduo Zhou, Charles Talbot, Christine Vogel, Martin Madera, Cyrus Chothia, Julian Gough:
SUPERFAMILY - sophisticated comparative genomics, data mining, visualization and phylogeny. 380-386 - Florian Kiefer, Konstantin Arnold, Michael Künzli, Lorenza Bordoli, Torsten Schwede:
The SWISS-MODEL Repository and associated resources. 387-392 - Kristian Rother, Peter Werner Hildebrand, Andrean Goede, Björn A. Grüning, Robert Preissner:
Voronoia: analyzing packing in protein structures. 393-395 - Daniel Barrell, Emily Dimmer, Rachael P. Huntley, David Binns, Claire O'Donovan, Rolf Apweiler:
The GOA database in 2009 - an integrated Gene Ontology Annotation resource. 396-403 - Estelle Proux-Wéra, Romain A. Studer, Sébastien Moretti, Marc Robinson-Rechavi:
Selectome: a database of positive selection. 404-407 - Mathias C. Walter, Thomas Rattei, Roland Arnold, Ulrich Güldener, Martin Münsterkötter, Karamfilka Nenova, Gabi Kastenmüller, Patrick Tischler, Andreas Wölling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner Mewes, Dmitrij Frishman:
PEDANT covers all complete RefSeq genomes. 408-411 - Lars Juhl Jensen, Michael Kuhn, Manuel Stark, Samuel Chaffron, Christopher J. Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering:
STRING 8 - a global view on proteins and their functional interactions in 630 organisms. 412-416 - William Fu, Brigitte E. Sanders-Beer, Kenneth S. Katz, Donna R. Maglott, Kim D. Pruitt, Roger G. Ptak:
Human immunodeficiency virus type 1, human protein interaction database at NCBI. 417-422 - In Seok Yang, Joo-Yeon Lee, Joon Seung Lee, Wayne P. Mitchell, Hee-Bok Oh, Chun Kang, Kyung Hyun Kim:
Influenza sequence and epitope database. 423-430 - Robert Belshaw, Tulio de Oliveira, Sidney Markowitz, Andrew Rambaut:
The RNA Virus Database. 431-435 - Mauricio Carrillo-Tripp, Craig M. Shepherd, Ian A. Borelli, Sangita Venkataraman, Gabriel Lander, Padmaja Natarajan, John E. Johnson, Charles L. Brooks III, Vijay S. Reddy:
VIPERdb2: an enhanced and web API enabled relational database for structural virology. 436-442 - Bo Liu, Mihai Pop:
ARDB - Antibiotic Resistance Genes Database. 443-447 - Pavel S. Novichkov, Igor Ratnere, Yuri I. Wolf, Eugene V. Koonin, Inna Dubchak:
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. 448-454 - Ren Zhang, Yan Lin:
DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes. 455-458 - Fenglou Mao, PhuongAn Dam, Jacky Chou, Victor Olman, Ying Xu:
DOOR: a database for prokaryotic operons. 459-463 - Ingrid M. Keseler, César Bonavides-Martínez, Julio Collado-Vides, Socorro Gama-Castro, Robert P. Gunsalus, D. Aaron Johnson, Markus Krummenacker, Laura M. Nolan, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Alberto D. Santos-Zavaleta, Alexander Glennon Shearer, Peter D. Karp:
EcoCyc: A comprehensive view of Escherichia coli biology. 464-470 - Tania Lima, Andrea H. Auchincloss, Elisabeth Coudert, Guillaume Keller, Karine Michoud, Catherine Rivoire, Virginie Bulliard, Edouard De Castro, Corinne Lachaize, Delphine Baratin, Isabelle Phan, Lydie Bougueleret, Amos Bairoch:
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. 471-478 - Mihaela Pertea, Kunmi Ayanbule, Megan Smedinghoff, Steven L. Salzberg:
OperonDB: a comprehensive database of predicted operons in microbial genomes. 479-482 - Geoffrey L. Winsor, Thea Van Rossum, Raymond Lo, Bhavjinder Khaira, Matthew D. Whiteside, Robert E. W. Hancock, Fiona S. L. Brinkman:
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. 483-488 - Zarraz May-Ping Lee, Carl Bussema III, Thomas M. Schmidt:
rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea. 489-493 - Johannes Klein, Richard Münch, Ilona Biegler, Isam Haddad, Ida Retter, Dieter Jahn:
Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR). 494-498 - T. B. K. Reddy, Robert Riley, Farrell Wymore, Phillip Montgomery, David DeCaprio, Reinhard Engels, Marcel Gellesch, Jeremy Hubble, Dennis Jen, Heng Jin, Michael Koehrsen, Lisa Larson, Maria Mao, Michael Nitzberg, Peter Sisk, Christian Stolte, Brian Weiner, Jared White, Zachariah K. Zachariah, Gavin Sherlock, James E. Galagan, Catherine A. Ball, Gary K. Schoolnik:
TB database: an integrated platform for tuberculosis research. 499-508 - Jane E. Mabey Gilsenan, Graham Atherton, Jennifer Bartholomew, Peter F. Giles, Teresa K. Attwood, David W. Denning, Paul Bowyer:
Aspergillus Genomes and the Aspergillus Cloud. 509-514 - Petra Fey, Pascale Gaudet, Tomaz Curk, Blaz Zupan, Eric M. Just, Siddhartha Basu, Sohel N. Merchant, Yulia A. Bushmanova, Gad Shaulsky, Warren A. Kibbe, Rex L. Chisholm:
dictyBase - a Dictyostelium bioinformatics resource update. 515-519 - Hiroyuki Wakaguri, Yutaka Suzuki, Toshiaki Katayama, Shuichi Kawashima, Eri Kibukawa, Kazushi Hiranuka, Masahide Sasaki, Sumio Sugano, Junichi Watanabe:
Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009. 520-525 - Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jane M. Carlton, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan R. Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, John A. Miller, Hilary G. Morrison, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian J. Stoeckert Jr., Steven Sullivan, Charles Treatman, Haiming Wang:
GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. 526-530 - John W. Whitaker, Ivica Letunic, Glenn A. McConkey, David R. Westhead:
metaTIGER: a metabolic evolution resource. 531-538 - Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan R. Gingle, Gregory R. Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, John A. Miller, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Christian J. Stoeckert Jr., Charles Treatman, Haiming Wang:
PlasmoDB: a functional genomic database for malaria parasites. 539-543 - Alejandro A. Ackermann, Santiago J. Carmona, Fernán Agüero:
TcSNP: a database of genetic variation in Trypanosoma cruzi. 544-549 - David James Sherman, Tiphaine C. Martin, Macha Nikolski, Cyril Cayla, Jean-Luc Souciet, Pascal Durrens:
Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes. 550-554 - Susan Tweedie, Michael Ashburner, Kathleen Falls, Paul C. Leyland, Peter McQuilton, Steven J. Marygold, Gillian H. Millburn, David Osumi-Sutherland, Andrew J. Schroeder, Ruth L. Seal, Haiyan Zhang:
FlyBase: enhancing Drosophila Gene Ontology annotations. 555-559 - Andrei Pisarev, Ekaterina Poustelnikova, Maria Samsonova, John Reinitz:
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution. 560-566 - Doris Chen, Jürg Berger, Michaela Fellner, Takashi Suzuki:
FLYSNPdb: a high-density SNP database of Drosophila melanogaster. 567-570 - John C. Martin, Sahar Abubucker, Todd Wylie, Yong Yin, Zhengyuan Wang, Makedonka Dautova Mitreva:
Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics. 571-578 - Adhemar Zerlotini, Mark Heiges, Haiming Wang, Romulo L. V. Moraes, Anderson J. Dominitini, Jerônimo C. Ruiz, Jessica C. Kissinger, Guilherme C. Oliveira:
SchistoDB: a Schistosoma mansoni genome resource. 579-582 - Daniel Lawson, Peter Arensburger, Peter Atkinson, Nora J. Besansky, Robert V. Bruggner, Ryan Butler, Kathryn S. Campbell, George K. Christophides, Scott Christley, Emmanuel Dialynas, Martin Hammond, Catherine A. Hill, Nathan Konopinski, Neil F. Lobo,