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Olivier Dameron
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- affiliation: Stanford University, USA
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2020 – today
- 2024
- [j14]Marine Louarn, Guillaume Collet, Ève Barré, Thierry Fest, Olivier Dameron
, Anne Siegel, Fabrice Chatonnet
:
Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints. PLoS Comput. Biol. 20(1) (2024) - 2023
- [j13]Camille Juigné
, Olivier Dameron
, François Moreews, Florence Gondret
, Emmanuelle Becker:
Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using semantic web technologies. Bioinform. 39(5) (2023) - 2022
- [j12]Marc Melkonian
, Camille Juigné
, Olivier Dameron, Gwenaël Rabut
, Emmanuelle Becker
:
Towards a reproducible interactome: semantic-based detection of redundancies to unify protein-protein interaction databases. Bioinform. 38(6): 1685-1691 (2022) - [j11]Marine Louarn, Fabrice Chatonnet
, Xavier Garnier, Thierry Fest, Anne Siegel
, Catherine Faron
, Olivier Dameron
:
Improving reusability along the data life cycle: a regulatory circuits case study. J. Biomed. Semant. 13(1): 11 (2022) - 2021
- [c28]Johanne Bakalara, Thomas Guyet, Olivier Dameron, André Happe, Emmanuel Oger:
An Extension of Chronicles Temporal Model with Taxonomies: Application to Epidemiological Studies. HEALTHINF 2021: 133-142
2010 – 2019
- 2019
- [j10]Yann Rivault, Olivier Dameron
, Nolwenn Le Meur
:
queryMed: Semantic Web functions for linking pharmacological and medical knowledge to data. Bioinform. 35(17): 3203-3205 (2019) - [c27]Marine Louarn, Fabrice Chatonnet
, Xavier Garnier, Thierry Fest, Anne Siegel, Olivier Dameron
:
Increasing Life Science Resources Re-Usability using Semantic Web Technologies. eScience 2019: 217-225 - 2018
- [j9]Méziane Aite
, Marie Chevallier, Clémence Frioux
, Camille Trottier, Jeanne Got, María Paz Cortés, Sebastián N. Mendoza
, Grégory Carrier
, Olivier Dameron
, Nicolas Guillaudeux
, Mauricio Latorre
, Nicolás Loira
, Gabriel V. Markov
, Alejandro Maass
, Anne Siegel
:
Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models. PLoS Comput. Biol. 14(5) (2018) - [c26]Vincent Henry
, Ivan Moszer
, Olivier Dameron
, Marie-Claude Potier
, Martin Hofmann-Apitius
, Olivier Colliot
:
Converting Alzheimer's Disease Map into a Heavyweight Ontology: A Formal Network to Integrate Data. DILS 2018: 207-215 - 2017
- [c25]Yann Rivault, Nolwenn Le Meur
, Olivier Dameron:
A Similarity Measure Based on Care Trajectories as Sequences of Sets. AIME 2017: 278-282 - [c24]Jean Coquet
, Nathalie Théret
, Vincent Legagneux
, Olivier Dameron
:
Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF-β Signaling. CMSB 2017: 91-107 - 2016
- [b1]Olivier Dameron:
Ontology-based methods for analyzing life science data. University of Rennes 1, France, 2016 - 2015
- [j8]Andrej Machno, Pierre Jannin
, Olivier Dameron, Werner Korb, Gerik Scheuermann, Jürgen Meixensberger:
Ontology for assessment studies of human-computer-interaction in surgery. Artif. Intell. Medicine 63(2): 73-84 (2015) - 2014
- [j7]Gautier Defossez, Alexandre Rollet, Olivier Dameron, Pierre Ingrand:
Temporal representation of care trajectories of cancer patients using data from a regional information system: an application in breast cancer. BMC Medical Informatics Decis. Mak. 14: 24 (2014) - 2013
- [j6]Olivier Dameron, Paolo Besana, Oussama Zekri, Annabel Bourde, Anita Burgun
, Marc Cuggia
:
OWL model of clinical trial eligibility criteria compatible with partially-known information. J. Biomed. Semant. 4: 17 (2013) - [j5]Jean-François Ethier
, Olivier Dameron, Vasa Curcin
, Mark M. McGilchrist, Robert A. Verheij, Theodoros N. Arvanitis
, Adel Taweel
, Brendan Delaney
, Anita Burgun
:
A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm. J. Am. Medical Informatics Assoc. 20(5): 986-994 (2013) - 2012
- [j4]Charles Bettembourg, Christian Diot
, Anita Burgun
, Olivier Dameron:
GO2PUB: Querying PubMed with semantic expansion of gene ontology terms. J. Biomed. Semant. 3: 7 (2012) - [c23]Pascal Van Hille, Julie Jacques, Julien Taillard, Arnaud Rosier, David Delerue, Anita Burgun, Olivier Dameron:
Comparing Drools and ontology reasoning approaches for telecardiology decision support. MIE 2012: 300-304 - [c22]Wiktoria Golik, Olivier Dameron, Jérôme Bugeon, Alice Fatet, Isabelle Hue, Catherine Hurtaud
, Matthieu Reichstadt, Marie-Christine Salaün, Jean Vernet, Léa Joret, Frédéric Papazian, Claire Nedellec
, Pierre-Yves Le Bail:
ATOL: The Multi-species Livestock Trait Ontology. MTSR 2012: 289-300 - [c21]Olivier Dameron, Paolo Besana, Oussama Zekri, Annabel Bourde, Anita Burgun, Marc Cuggia:
OWL Model of Clinical Trial Eligibility Criteria Compatible with Partially-known Information. SWAT4LS 2012 - 2010
- [j3]Amrapali Zaveri
, Luciana Cofiel, Jatin Shah
, Shreyasee S. Pradhan, Edwin Chan, Olivier Dameron, Ricardo Pietrobon
, Beng Ti Ang:
Achieving High Research Reporting Quality Through the Use of Computational Ontologies. Neuroinformatics 8(4): 261-271 (2010) - [c20]Nicolas Lebreton, Christophe Blanchet, Daniela Barreiro Claro, Julie Chabalier, Anita Burgun, Olivier Dameron:
Verification of parameters semantic compatibility for semi-automatic web service composition: a generic case study. iiWAS 2010: 845-848 - [c19]Lynda Temal, Arnaud Rosier, Olivier Dameron, Anita Burgun:
Mapping BFO and DOLCE. MedInfo 2010: 1065-1069
2000 – 2009
- 2009
- [c18]Cyril Grouin, Arnaud Rosier
, Olivier Dameron, Pierre Zweigenbaum:
Testing Tactics to Localize De-Identification. MIE 2009: 735-739 - 2008
- [c17]Olivier Dameron, Julie Chabalier:
Bio-ontologies Tutorial. DILS 2008: 208 - [c16]Elena Beisswanger, Vivian Lee, Jung-Jae Kim, Dietrich Rebholz-Schuhmann, Andrea Splendiani, Olivier Dameron, Stefan Schulz, Udo Hahn:
Gene Regulation Ontology (GRO): Design Principles and Use Cases. MIE 2008: 9-14 - 2007
- [j2]Olivier Dameron, Mark A. Musen
, Bernard Gibaud
:
Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy. Artif. Intell. Medicine 39(3): 217-225 (2007) - [c15]Gwenaëlle Marquet, Olivier Dameron, Stephan Saikali, Jean Mosser, Anita Burgun:
Grading glioma tumors using OWL-DL and NCI Thesaurus. AMIA 2007 - 2006
- [j1]Daniel L. Rubin, Olivier Dameron, Yasser Bashir, David Grossman, Parvati Dev, Mark A. Musen
:
Using ontologies linked with geometric models to reason about penetrating injuries. Artif. Intell. Medicine 37(3): 167-176 (2006) - 2005
- [c14]Olivier Dameron, Daniel L. Rubin, Mark A. Musen:
Challenges in Converting Frame-Based Ontology into OWL: the Foundational Model of Anatomy Case-Study. AMIA 2005 - [c13]Daniel L. Rubin, Olivier Dameron, Mark A. Musen:
Use of Description Logic Classification to Reason about Consequences of Penetrating Injuries. AMIA 2005 - [c12]Daniel L. Rubin, Holger Knublauch, Ray W. Fergerson, Olivier Dameron, Mark A. Musen:
Protégé-OWL: Creating Ontology-Driven Reasoning Applications with the Web Ontology Language. AMIA 2005 - [c11]Christine Golbreich, Olivier Bierlaire, Olivier Dameron, Bernard Gibaud:
Use Case: Ontology with Rules for identifying brain anatomical structures. Rule Languages for Interoperability 2005 - 2004
- [c10]Olivier Dameron, Bernard Gibaud, Mark A. Musen:
Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy. KR-MED 2004: 30-38 - [c9]Holger Knublauch, Olivier Dameron, Mark A. Musen:
Weaving the biomedical Semantic Web with the Prote'ge' OWL Plugin. KR-MED 2004: 39-47 - [c8]Olivier Dameron, Natalya Fridman Noy, Holger Knublauch, Mark A. Musen:
Accessing and Manipulating Ontologies Using Web Services. SWS@ISWC 2004 - 2003
- [c7]Christine Golbreich, Olivier Dameron, Bernard Gibaud, Anita Burgun:
How to Represent Medical Ontologies in View of a Semantic Web? AIME 2003: 51-60 - [c6]Olivier Dameron, Anita Burgun, Xavier Morandi, Bernard Gibaud:
Modelling dependencies between relations to ensure consistency of a cerebral cortex anatomy knowledge base. MIE 2003: 403-408 - [c5]Bernard Gibaud, Olivier Dameron, Xavier Morandi:
Re-use of a multi-purpose knowledge corpus on cortex anatomy for educational purposes. MIE 2003: 439-444 - [c4]Christine Golbreich, Olivier Dameron, Bernard Gibaud, Anita Burgun:
Web Ontology Language Requirements w.r.t Expressiveness of Taxonomy and Axioms in Medicine. ISWC 2003: 180-194 - 2002
- [c3]Olivier Dameron, Bernard Gibaud, Anita Burgun, Xavier Morandi:
Towards a sharable numeric and symbolic knowledge base on cerebral cortex anatomy: lessons learned from a prototype. AMIA 2002 - 2001
- [c2]Olivier Dameron, Bernard Gibaud, Xavier Morandi
:
Numeric and Symbolic Knowledge Representation of Cortex Anatomy Using Web Technologies. AIME 2001: 359-368 - [c1]Bernard Gibaud, Olivier Dameron, Xavier Morandi:
Representing and sharing numeric and symbolic knowledge of brain cortex anatomy using web technology. CARS 2001: 372-378
Coauthor Index
aka: Anita Burgun
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