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ORCIDRuss B. Altman
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- affiliation: Stanford University, CA, USA
- award: Presidential Early Career Award for Scientists and Engineers
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2020 – today
- 2024
[j124]Daniel N. Sosa, Georgiana Neculae, Julien Fauqueur, Russ B. Altman:
Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery. J. Biomed. Semant. 15(1): 5 (2024)- [c86]Gautam Machiraju, Alexander Derry, Arjun D. Desai, Neel Guha, Amir-Hossein Karimi, James Zou, Russ B. Altman, Christopher Ré, Parag Mallick:
Prospector Heads: Generalized Feature Attribution for Large Models & Data. ICML 2024 - [i11]Gautam Machiraju, Alexander Derry
, Arjun D. Desai, Neel Guha, Amir-Hossein Karimi, James Zou, Russ B. Altman, Christopher Ré, Parag Mallick:
Prospector Heads: Generalized Feature Attribution for Large Models & Data. CoRR abs/2402.11729 (2024) - [i10]Kaixuan Huang, Yuanhao Qu, Henry Cousins, William A. Johnson, Di Yin, Mihir Shah, Denny Zhou, Russ B. Altman, Mengdi Wang, Le Cong:
CRISPR-GPT: An LLM Agent for Automated Design of Gene-Editing Experiments. CoRR abs/2404.18021 (2024) - [i9]Abdoul Jalil Djiberou Mahamadou, Lea Goetz, Russ B. Altman:
Individual Fairness Through Reweighting and Tuning. CoRR abs/2405.01711 (2024) - [i8]Abdoul Jalil Djiberou Mahamadou, Aloysius Ochasi, Russ B. Altman:
Data Ethics in the Era of Healthcare Artificial Intelligence in Africa: An Ubuntu Philosophy Perspective. CoRR abs/2406.10121 (2024) - [i7]Aloysius Ochasi, Abdoul Jalil Djiberou Mahamadou, Russ B. Altman:
Justice in Healthcare Artificial Intelligence in Africa. CoRR abs/2406.10653 (2024) - 2023
- [j123]Henry Cousins, Taryn Hall, Yinglong Guo, Luke Tso, Kathy T. H. Tzeng, Le Cong, Russ B. Altman:
Gene set proximity analysis: expanding gene set enrichment analysis through learned geometric embeddings, with drug-repurposing applications in COVID-19. Bioinform. 39(1) (2023) - [j122]Lu Yang, Sheng Wang, Russ B. Altman:
POPDx: an automated framework for patient phenotyping across 392 246 individuals in the UK Biobank study. J. Am. Medical Informatics Assoc. 30(2): 245-255 (2023) - [j121]Daniel N. Sosa, Rogier Hintzen, Betty Xiong, Alex de Giorgio, Julien Fauqueur, Mark Davies, Jake Lever, Russ B. Altman:
Associating biological context with protein-protein interactions through text mining at PubMed scale. J. Biomed. Informatics 145: 104474 (2023) - [c85]Daniel N. Sosa, Malavika Suresh, Christopher Potts, Russ B. Altman:
Detecting Contradictory COVID-19 Drug Efficacy Claims from Biomedical Literature. ACL (2) 2023: 694-713 - 2022
- [j120]Margaret G. Guo, Daniel N. Sosa, Russ B. Altman:
Challenges and opportunities in network-based solutions for biological questions. Briefings Bioinform. 23(1) (2022) - [j119]Daniel N. Sosa, Russ B. Altman:
Contexts and contradictions: a roadmap for computational drug repurposing with knowledge inference. Briefings Bioinform. 23(4) (2022) - [j118]Tianyun Liu, Shiyin Wang, Michael Wornow, Russ B. Altman:
Construction of disease-specific cytokine profiles by associating disease genes with immune responses. PLoS Comput. Biol. 18(4) (2022) - [i6]Lu Yang, Sheng Wang, Russ B. Altman:
POPDx: An Automated Framework for Patient Phenotyping across 392, 246 Individuals in the UK Biobank Study. CoRR abs/2208.11223 (2022) - [i5]Daniel N. Sosa, Malavika Suresh, Christopher Potts, Russ B. Altman:
Detecting Contradictory COVID-19 Drug Efficacy Claims from Biomedical Literature. CoRR abs/2212.09867 (2022) - 2021
- [j117]Emily R. Flynn, Annie Chang, Russ B. Altman:
Large-scale labeling and assessment of sex bias in publicly available expression data. BMC Bioinform. 22(1): 168 (2021) - [j116]Daniel N. Sosa, Binbin Chen, Amit Kaushal, Adam Lavertu, Jake Lever, Stefano E. Rensi, Russ B. Altman:
Repurposing biomedical informaticians for COVID-19. J. Biomed. Informatics 115: 103673 (2021) - [j115]Mike Wong, Paul Previde, Jack Cole, Brook Thomas, Nayana Laxmeshwar, Emily K. Mallory, Jake Lever, Dragutin Petkovic, Russ B. Altman, Anagha Kulkarni:
Search and visualization of gene-drug-disease interactions for pharmacogenomics and precision medicine research using GeneDive. J. Biomed. Informatics 117: 103732 (2021) - [j114]Lichy Han, Zahra N. Sayyid, Russ B. Altman:
Modeling drug response using network-based personalized treatment prediction (NetPTP) with applications to inflammatory bowel disease. PLoS Comput. Biol. 17(2) (2021) - [c84]Andre Kumar, Rachael C. Aikens, Jason Horn, Lisa Shieh, Mark A. Musen, Michael Baiocchi, Russ B. Altman, Mary K. Goldstein, Steven M. Asch, Jonathan H. Chen:
Randomized user testing of recommender system clinical decision support. AMIA 2021 - [c83]Raphael J. L. Townshend, Martin Vögele, Patricia Suriana, Alexander Derry, Alexander S. Powers, Yianni Laloudakis, Sidhika Balachandar, Bowen Jing, Brandon M. Anderson, Stephan Eismann, Risi Kondor, Russ B. Altman, Ron O. Dror:
ATOM3D: Tasks on Molecules in Three Dimensions. NeurIPS Datasets and Benchmarks 2021 - [c82]Gregory McInnes, Russ B. Altman:
Drug Response Pharmacogenetics for 200, 000 UK Biobank Participants. PSB 2021 - [i4]Rishi Bommasani, Drew A. Hudson, Ehsan Adeli, Russ B. Altman, Simran Arora, Sydney von Arx, Michael S. Bernstein, Jeannette Bohg, Antoine Bosselut, Emma Brunskill, Erik Brynjolfsson, Shyamal Buch, Dallas Card, Rodrigo Castellon, Niladri S. Chatterji, Annie S. Chen, Kathleen Creel, Jared Quincy Davis, Dorottya Demszky, Chris Donahue, Moussa Doumbouya, Esin Durmus, Stefano Ermon, John Etchemendy, Kawin Ethayarajh, Li Fei-Fei, Chelsea Finn, Trevor Gale, Lauren Gillespie, Karan Goel, Noah D. Goodman, Shelby Grossman, Neel Guha, Tatsunori Hashimoto, Peter Henderson, John Hewitt, Daniel E. Ho, Jenny Hong, Kyle Hsu, Jing Huang, Thomas Icard, Saahil Jain, Dan Jurafsky, Pratyusha Kalluri, Siddharth Karamcheti, Geoff Keeling, Fereshte Khani, Omar Khattab, Pang Wei Koh, Mark S. Krass, Ranjay Krishna, Rohith Kuditipudi, et al.:
On the Opportunities and Risks of Foundation Models. CoRR abs/2108.07258 (2021) - 2020
- [j113]Emily K. Mallory, Matthieu de Rochemonteix, Alexander Ratner, Ambika Acharya, Christopher Ré, Roselie A. Bright, Russ B. Altman:
Extracting chemical reactions from text using Snorkel. BMC Bioinform. 21(1): 217 (2020) - [j112]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks. J. Am. Medical Informatics Assoc. 27(5): 757-769 (2020) - [j111]Andre Kumar, Rachael C. Aikens, Jason Hom, Lisa Shieh, Jonathan Chiang, David Morales, Divya Saini, Mark A. Musen, Michael T. M. Baiocchi, Russ B. Altman, Mary K. Goldstein, Steven M. Asch, Jonathan H. Chen:
OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases. J. Am. Medical Informatics Assoc. 27(12): 1850-1859 (2020) - [j110]Sheng Wang, Emily R. Flynn, Russ B. Altman:
Gaussian embedding for large-scale gene set analysis. Nat. Mach. Intell. 2(7): 387-395 (2020) - [j109]Gregory McInnes, Rachel Dalton, Katrin Sangkuhl, Michelle Whirl Carrillo, Seung-been Lee, Philip S. Tsao, Andrea Gaedigk, Russ B. Altman, Erica L. Woodahl:
Transfer learning enables prediction of CYP2D6 haplotype function. PLoS Comput. Biol. 16(11): 1008399 (2020) - [c81]Daniel N. Sosa, Alexander Derry, Margaret G. Guo, Eric Wei, Connor Brinton, Russ B. Altman:
A Literature-Based Knowledge Graph Embedding Method for Identifying Drug RepurposingOpportunities in Rare Diseases. PSB 2020: 463-474 - [c80]Jake Lever, Julia M. Barbarino, Li Gong, Rachel Huddart, Katrin Sangkuhl, Ryan Whaley, Michelle Whirl Carrillo, Mark Woon, Teri E. Klein, Russ B. Altman:
PGxMine: Text Mining for Curation of PharmGKB. PSB 2020: 611-622 - [c79]Yash Pershad, Margaret G. Guo, Russ B. Altman:
Pathway and Network Embedding Methods for Prioritizing Psychiatric Drugs. PSB 2020: 671-682 - [e25]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein:
Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2021. WorldScientific 2020, ISBN 9789811232695 [contents] - [i3]Raphael J. L. Townshend, Martin Vögele, Patricia Suriana, Alexander Derry, Alexander S. Powers, Yianni Laloudakis, Sidhika Balachandar, Brandon M. Anderson, Stephan Eismann, Risi Kondor, Russ B. Altman, Ron O. Dror:
ATOM3D: Tasks On Molecules in Three Dimensions. CoRR abs/2012.04035 (2020)
2010 – 2019
- 2019
- [j108]Yu-Chen Lo, Tianyun Liu, Kari M. Morrissey, Satoko Kakiuchi-Kiyota, Adam R. Johnson, Fabio Broccatelli, Yu Zhong, Amita Joshi, Russ B. Altman:
Computational analysis of kinase inhibitor selectivity using structural knowledge. Bioinform. 35(2): 235-242 (2019) - [j107]Wen Torng, Russ B. Altman:
High precision protein functional site detection using 3D convolutional neural networks. Bioinform. 35(9): 1503-1512 (2019) - [j106]Jennifer L. Wilson, Mike Wong, Ajinkya Chalke, Nicholas Stepanov, Dragutin Petkovic, Russ B. Altman:
PathFXweb: a web application for identifying drug safety and efficacy phenotypes. Bioinform. 35(21): 4504-4506 (2019) - [j105]Adam Lavertu, Russ B. Altman:
RedMed: Extending drug lexicons for social media applications. J. Biomed. Informatics 99 (2019) - [j104]Wen Torng, Russ B. Altman:
Graph Convolutional Neural Networks for Predicting Drug-Target Interactions. J. Chem. Inf. Model. 59(10): 4131-4149 (2019) - [c78]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks. AMIA 2019 - [c77]Sheng Wang, Emily R. Flynn, Russ B. Altman:
GRep: Gene Set Representation via Gaussian Embedding. RECOMB 2019: 318-319 - [e24]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2019. 2019 [contents] - 2018
- [j103]Lichy Han, Mateusz Maciejewski, Christoph Brockel, William Gordon, Scott B. Snapper, Joshua R. Korzenik, Lovisa Afzelius, Russ B. Altman:
A probabilistic pathway score (PROPS) for classification with applications to inflammatory bowel disease. Bioinform. 34(6): 985-993 (2018) - [j102]Bethany Percha, Russ B. Altman:
A global network of biomedical relationships derived from text. Bioinform. 34(15): 2614-2624 (2018) - [j101]Weizhuang Zhou, Russ B. Altman:
Data-driven human transcriptomic modules determined by independent component analysis. BMC Bioinform. 19(1): 327:1-327:25 (2018) - [j100]Bethany Percha, Yuhao Zhang, Selen Bozkurt, Daniel L. Rubin, Russ B. Altman, Curtis P. Langlotz:
Expanding a radiology lexicon using contextual patterns in radiology reports. J. Am. Medical Informatics Assoc. 25(6): 679-685 (2018) - [j99]Jennifer L. Wilson, Rebecca Racz, Tianyun Liu, Oluseyi Adeniyi, Jielin Sun, Anuradha Ramamoorthy, Michael Pacanowski, Russ B. Altman:
PathFX provides mechanistic insights into drug efficacy and safety for regulatory review and therapeutic development. PLoS Comput. Biol. 14(12) (2018) - [c76]Kun-Hsing Yu, Gerald J. Berry, Daniel L. Rubin, Christopher Ré, Russ B. Altman, Michael Snyder:
Unraveling the Molecular Basis of Lung Adenocarcinoma Dedifferentiation and Prognosis by Integrating Omics and Histopathology. AMIA 2018 - [c75]Emily K. Mallory, Ambika Acharya, Stefano E. Rensi, Peter J Turnbaugh, Roselie A. Bright, Russ B. Altman:
Chemical reaction vector embeddings: towards predicting drug metabolism in the human gut microbiome. PSB 2018: 56-67 - [c74]Dragutin Petkovic, Russ B. Altman, Mike Wong, Arthur Vigil:
Improving the explainability of Random Forest classifier - user centered approach. PSB 2018: 204-215 - [c73]Paul Previde, Brook Thomas, Mike Wong, Emily K. Mallory, Dragutin Petkovic, Russ B. Altman, Anagha Kulkarni:
GeneDive: A gene interaction search and visualization tool to facilitate precision medicine. PSB 2018: 590-601 - [e23]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2018. 2018 [contents] - 2017
- [j98]Weizhuang Zhou, Lichy Han, Russ B. Altman:
Imputing gene expression to maximize platform compatibility. Bioinform. 33(4): 522-528 (2017) - [j97]Wen Torng, Russ B. Altman:
3D deep convolutional neural networks for amino acid environment similarity analysis. BMC Bioinform. 18(1): 302 (2017) - [j96]Jonathan H. Chen, Muthuraman Alagappan, Mary K. Goldstein, Steven M. Asch, Russ B. Altman:
Decaying relevance of clinical data towards future decisions in data-driven inpatient clinical order sets. Int. J. Medical Informatics 102: 71-79 (2017) - [j95]Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Lester W. Mackey, Russ B. Altman:
Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets. J. Am. Medical Informatics Assoc. 24(3): 472-480 (2017) - [j94]Lichy Han, Robert Ball, Carol A. Pamer, Russ B. Altman, Scott Proestel:
Development of an automated assessment tool for MedWatch reports in the FDA adverse event reporting system. J. Am. Medical Informatics Assoc. 24(5): 913-920 (2017) - [j93]Stefano E. Rensi, Russ B. Altman:
Shallow Representation Learning via Kernel PCA Improves QSAR Modelability. J. Chem. Inf. Model. 57(8): 1859-1867 (2017) - [c72]Kun-Hsing Yu, Ce Zhang, Gerald J. Berry, Russ B. Altman, Christopher Ré, Daniel L. Rubin, Michael Snyder:
Predicting Non-Small Cell Lung Cancer Diagnosis and Prognosis by Fully Automated Microscopic Pathology Image Features. AMIA 2017 - [c71]Muthuraman Alagappan, Mary K. Goldstein, Steven M. Asch, Russ B. Altman, Jonathan H. Chen:
Decaying Relevance of Clinical Data when Predicting Future Decisions. CRI 2017 - [e22]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2017. 2017 [contents] - 2016
- [j92]Russ B. Altman:
Current Progress in Bioinformatics 2016. Briefings Bioinform. 17(1): 1 (2016) - [j91]Emily K. Mallory, Ce Zhang, Christopher Ré, Russ B. Altman:
Large-scale extraction of gene interactions from full-text literature using DeepDive. Bioinform. 32(1): 106-113 (2016) - [j90]Sara Hillenmeyer, Lea K. Davis, Eric R. Gamazon, Edwin H. Cook Jr., Nancy J. Cox, Russ B. Altman:
STAMS: STRING-assisted module search for genome wide association studies and application to autism. Bioinform. 32(24): 3815-3822 (2016) - [j89]Jonathan H. Chen, Tanya Podchiyska, Russ B. Altman:
OrderRex: clinical order decision support and outcome predictions by data-mining electronic medical records. J. Am. Medical Informatics Assoc. 23(2): 339-348 (2016) - [j88]Steven C. Bagley, Russ B. Altman:
Computing disease incidence, prevalence and comorbidity from electronic medical records. J. Biomed. Informatics 63: 108-111 (2016) - [j87]Steven C. Bagley, Marina Sirota, Richard O. Chen, Atul J. Butte, Russ B. Altman:
Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants. PLoS Comput. Biol. 12(4) (2016) - [c70]Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Russ B. Altman:
Usability of an Automated Recommender System for Clinical Order Entry. AMIA 2016 - [c69]Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Lester W. Mackey, Russ B. Altman:
Automated Organization of Electronic Health Record Data by Probabilistic Topic Modeling to Inform Clinical Decision Making. CRI 2016 - [c68]Anthony E. Solomonides, Russ B. Altman, Joshua C. Denny, Larry Ozeran, Jessica D. Tenenbaum:
The Many Meanings of Precision Medicine. CRI 2016 - [c67]Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Russ B. Altman:
Dynamically Evolving Clinical Practices and Implications for Predicting Medical Decisions. PSB 2016: 195-206 - [c66]Yong Fuga Li, Fuxiao Xin, Russ B. Altman:
Separating the Causes and Consequences in Disease Transcriptome. PSB 2016: 381-392 - [e21]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2016. 2016 [contents] - 2015
- [j86]Omri Mugzach, Mor Peleg, Steven C. Bagley, Stephen J. Guter, Edwin H. Cook Jr., Russ B. Altman:
An ontology for Autism Spectrum Disorder (ASD) to infer ASD phenotypes from Autism Diagnostic Interview-Revised data. J. Biomed. Informatics 56: 333-347 (2015) - [j85]Tianyun Liu, Russ B. Altman:
Relating Essential Proteins to Drug Side-Effects Using Canonical Component Analysis: A Structure-Based Approach. J. Chem. Inf. Model. 55(7): 1483-1494 (2015) - [j84]Weizhuang Zhou, Grace W. Tang, Russ B. Altman:
High Resolution Prediction of Calcium-Binding Sites in 3D Protein Structures Using FEATURE. J. Chem. Inf. Model. 55(8): 1663-1672 (2015) - [j83]Amanda Miguel, Jen Hsin, Tianyun Liu, Grace W. Tang, Russ B. Altman, Kerwyn Casey Huang:
Variations in the Binding Pocket of an Inhibitor of the Bacterial Division Protein FtsZ across Genotypes and Species. PLoS Comput. Biol. 11(3) (2015) - [j82]Bethany Percha, Russ B. Altman:
Learning the Structure of Biomedical Relationships from Unstructured Text. PLoS Comput. Biol. 11(7) (2015) - [c65]Darla Hewett, Michelle Whirl Carrillo, Lawrence E. Hunter, Russ B. Altman, Teri E. Klein:
A Twentieth Anniversary Tribute to PSB. Pacific Symposium on Biocomputing 2015: 1-7 - [c64]Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Kevin Bretonnel Cohen, Elizabeth Wethington, Carsten Görg, Lawrence E. Hunter, Spencer V. Muse, Predrag Radivojac, Jason H. Moore:
Training the Next Generation of Quantitative Biologists in the Era of Big Data. Pacific Symposium on Biocomputing 2015: 488-492 - [e20]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2015. 2015 [contents] - 2014
- [j81]Andrey Rzhetsky, Steven C. Bagley, Kanix Wang, Christopher S. Lyttle, Edwin H. Cook Jr., Russ B. Altman, Robert D. Gibbons:
Environmental and State-Level Regulatory Factors Affect the Incidence of Autism and Intellectual Disability. PLoS Comput. Biol. 10(3) (2014) - [j80]Grace W. Tang, Russ B. Altman:
Knowledge-based Fragment Binding Prediction. PLoS Comput. Biol. 10(4) (2014) - [c63]Jonathan H. Chen, Russ B. Altman:
"Doctors who ordered this also ordered..." Automated physician order recommendations and outcome predictions by data-mining electronic medical records. AMIA 2014 - [c62]Roxana Daneshjou, Zachary Zappala, Kimberly R. Kukurba, Sean M. Boyle, Kelly E. Ormond, Teri E. Klein, Michael Snyder, Carlos D. Bustamante, Russ B. Altman, Stephen B. Montgomery:
PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants. Pacific Symposium on Biocomputing 2014: 229-240 - [c61]Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Lawrence E. Hunter, David A. Ross, James A. Foster, Jason H. Moore:
Building the Next Generation of Quantitative Biologists. Pacific Symposium on Biocomputing 2014: 417-421 - [e19]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2014. 2014 [contents] - 2013
- [j79]Ryen W. White, Nicholas P. Tatonetti, Nigam H. Shah, Russ B. Altman, Eric Horvitz:
Web-scale pharmacovigilance: listening to signals from the crowd. J. Am. Medical Informatics Assoc. 20(3): 404-408 (2013) - [j78]Nicholas P. Tatonetti, Joshua C. Denny, Russ B. Altman:
Correspondence: Response to 'Use of an algorithm for identifying hidden drug-drug interactions in adverse event reports' by Gooden et al. J. Am. Medical Informatics Assoc. 20(3): 591 (2013) - [j77]Guy Haskin Fernald, Russ B. Altman:
Using Molecular Features of Xenobiotics to Predict Hepatic Gene Expression Response. J. Chem. Inf. Model. 53(10): 2765-2773 (2013) - [j76]Kai J. Kohlhoff, Vijay S. Pande, Russ B. Altman:
K-Means for Parallel Architectures Using All-Prefix-Sum Sorting and Updating Steps. IEEE Trans. Parallel Distributed Syst. 24(8): 1602-1612 (2013) - [c60]Omri Mugzach, Mor Peleg, Steven C. Bagley, Russ B. Altman:
Expanding the Autism Ontology to DSM-IV Criteria. AMIA 2013 - [c59]Bethany Percha, Russ B. Altman:
Inferring the semantic relationships of words within an ontology using random indexing: applications to pharmacogenomics. AMIA 2013 - [e18]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2013. World Scientific Publishing 2013, ISBN 978-1-62748-016-1 [contents] - [i2]Russ B. Altman, Cheng Che Chen, William B. Poland, Jaswinder Pal Singh:
Probabilistic Constraint Satisfaction with Non-Gaussian Noise. CoRR abs/1302.6780 (2013) - [i1]Russ B. Altman:
A Probabilistic Algorithm for Calculating Structure: Borrowing from Simulated Annealing. CoRR abs/1303.1456 (2013) - 2012
- [j75]Russ B. Altman:
Editorial: Current progress in Bioinformatics 2012. Briefings Bioinform. 13(4): 393-394 (2012) - [j74]Fabio Rinaldi, Simon Clematide, Yael Garten, Michelle Whirl Carrillo, Li Gong, Joan M. Hebert, Katrin Sangkuhl, Caroline F. Thorn, Teri E. Klein, Russ B. Altman:
Using ODIN for a PharmGKB revalidation experiment. Database J. Biol. Databases Curation 2012 (2012) - [j73]Nicholas P. Tatonetti, Guy Haskin Fernald, Russ B. Altman:
A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports. J. Am. Medical Informatics Assoc. 19(1): 79-85 (2012) - [j72]Scott L. Delp, Joy P. Ku, Vijay S. Pande, Michael A. Sherman, Russ B. Altman:
Simbios: an NIH national center for physics-based simulation of biological structures. J. Am. Medical Informatics Assoc. 19(2): 186-189 (2012) - [j71]Adrien Coulet, K. Bretonnel Cohen, Russ B. Altman:
The state of the art in text mining and natural language processing for pharmacogenomics. J. Biomed. Informatics 45(5): 825-826 (2012) - [j70]Russ B. Altman:
Introduction to Translational Bioinformatics Collection. PLoS Comput. Biol. 8(12) (2012) - [j69]Konrad J. Karczewski, Roxana Daneshjou, Russ B. Altman:
Chapter 7: Pharmacogenomics. PLoS Comput. Biol. 8(12) (2012) - [c58]Konrad J. Karczewski, Robert P. Tirrell, Pablo Cordero, Nicholas P. Tatonetti, Joel T. Dudley, Keyan Salari, Michael Snyder, Russ B. Altman, Stuart K. Kim:
Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation Engine. Pacific Symposium on Biocomputing 2012: 339-350 - [c57]Bethany Percha, Yael Garten, Russ B. Altman:
Discovery and Explanation of Drug-Drug Interactions via Text Mining. Pacific Symposium on Biocomputing 2012: 410-421 - [c56]Marylyn D. Ritchie, Nancy J. Cox, Cheng Cheng, Scott Weiss, Teri E. Klein, Russ B. Altman:
Systems Pharmacogenomics-Bridging the Gap. Pacific Symposium on Biocomputing 2012: 442 - [e17]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2012. World Scientific Publishing 2012, ISBN 978-1-61839-811-6 [contents] - 2011