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Dong Xu 0002
Person information

- affiliation: University of Missouri, Department of Computer Science / C.S. Bond Life Sciences Center, Columbia, MO, USA
- affiliation (former): Jilin University, College of Computer Science and Technology, Changchun, China
- affiliation (former): Oak Ridge National Laboratory, Life Sciences Division, Protein Informatics Group, Oak Ridge, TN, USA
- affiliation (PhD 1995): University of Illinois at Urbana-Champaign, IL, USA
Other persons with the same name
- Dong Xu — disambiguation page
- Dong Xu 0001
— University of Hong Kong, Department of Computer Science, Hong Kong (and 4 more)
- Dong Xu 0003 — Shanghai Normal University, Shanghai, China
- Dong Xu 0004
— Tsinghua University, Department of Precision Instrument, Beijing, China
- Dong Xu 0005
— Beihang University, School of Automation Science and Electrical Engineering, Beijing, China (and 1 more)
- Dong Xu 0006
— Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Hangzhou, China (and 1 more)
- Dong Xu 0007 — University of Arizona, Department of Systems and Industrial Engineering, Tucson, AZ, USA
- Dong Xu 0008 — Sanford-Burnham Medical Research Institute, San Diego, CA, USA (and 2 more)
- Dong Xu 0009 — East China Normal University, School of Geographic Sciences, Key Laboratory of Geographic Information Science, Shanghai, China
- Dong Xu 0010 — Harbin Engineering University, College of Computer Science and Technology, Harbin, China
- Dong Xu 0011
— Wuhan University, State Key Laboratory of Information Engineering in Surveying Mapping and Remote Sensing, Wuhan, China
- Dong Xu 0012 — University of Duisburg-Essen, Department of Communication Technology, Duisburg, Germany
- Dong Xu 0013
— University of Science and Technology Beijing, National Engineering Research Center for Advanced Rolling and Intelligent Manufacturing, Beijing, China (and 1 more)
- Dong Xu 0014
— Anhui University of Technology, Engineering Research Institute, Ma'anshan, China
- Dong Xu 0015
— ZTE Corporation, Shanghai, China
- Dong Xu 0016
— Chang Gung University, Taoyuan, Taiwan
- Dong Xu 0017
— Beijing Normal University, Faculty of Geographical Science, State Key Laboratory of Remote Sensing Science, Beijing, China (and 2 more)
- Dong Xu 0018
— Tongji University, School of Mechanical Engineering, Tongji, China (and 1 more)
- Dong Xu 0019
— Northeastern University, College of Information Science and Engineering, Shenyang, China
- Dong Xu 0020
— East China Jiaotong University, Department of Internet of Things, NanChang, China
- Dong Xu 0021
— University of Virginia, Charlottesville, VA, USA
- Dong Xu 0022
— Idaho State University, College of Pharmacy, Department of Biomedical and Pharmaceutical Sciences, Meridian, ID, USA
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2020 – today
- 2023
- [j93]Zhengzhong Qiu, Wei Bi, Dong Xu, Hua Guo, Hongwei Ge, Yanchun Liang, Heow Pueh Lee
, Chunguo Wu
:
Efficient Self-learning Evolutionary Neural Architecture Search. Appl. Soft Comput. 146: 110671 (2023) - [j92]Zhenhao Wang
, Rui Xu, Tingyuan Nie, Dong Xu:
Semi-supervised active learning hypothesis verification for improved geometric expression in three-dimensional object recognition. Eng. Appl. Artif. Intell. 120: 105956 (2023) - [j91]Jihong Ouyang, Dong Mao, Zeqi Guo, Siguang Liu
, Dong Xu, Wenting Wang:
Contrastive self-supervised learning for diabetic retinopathy early detection. Medical Biol. Eng. Comput. 61(9): 2441-2452 (2023) - [j90]Yuexu Jiang, Lei Jiang, Chopparapu Sai Akhil, Duolin Wang, Ziyang Zhang, Weinan Zhang, Dong Xu
:
MULocDeep web service for protein localization prediction and visualization at subcellular and suborganellar levels. Nucleic Acids Res. 51(W1): 343-349 (2023) - [j89]Duolin Wang, Fei He, Yang Yu, Dong Xu
:
Meta-learning for T cell receptor binding specificity and beyond. Nat. Mac. Intell. 5(4): 337-339 (2023) - [j88]Yuanxun Zhang, Prasad Calyam
, Trupti Joshi
, Satish S. Nair
, Dong Xu
:
Domain-Specific Topic Model for Knowledge Discovery in Computational and Data-Intensive Scientific Communities. IEEE Trans. Knowl. Data Eng. 35(2): 1402-1420 (2023) - [i6]Yubin Xiao, Di Wang, Huanhuan Chen, Boyang Li, Wei Pang, Xuan Wu, Hao Li, Dong Xu, Yanchun Liang, You Zhou:
Reinforcement Learning-based Non-Autoregressive Solver for Traveling Salesman Problems. CoRR abs/2308.00560 (2023) - [i5]Fei He, Zhiyuan Yang, Mingyue Gao, Biplab Poudel, Newgin Sam Ebin Sam Dhas, Rajan Gyawali, Ashwin Dhakal, Jianlin Cheng, Dong Xu:
Adapting Segment Anything Model (SAM) through Prompt-based Learning for Enhanced Protein Identification in Cryo-EM Micrographs. CoRR abs/2311.16140 (2023) - 2022
- [j87]Shuangquan Zhang, Anjun Ma
, Jing Zhao, Dong Xu, Qin Ma
, Yan Wang
:
Assessing deep learning methods in cis-regulatory motif finding based on genomic sequencing data. Briefings Bioinform. 23(1) (2022) - [j86]Renchu Guan, Haoyu Pang, Yanchun Liang, Zhongjun Shao, Xin Gao
, Dong Xu, Xiaoyue Feng:
Discovering trends and hotspots of biosafety and biosecurity research via machine learning. Briefings Bioinform. 23(5) (2022) - [j85]Haocheng Gu, Hao Cheng, Anjun Ma
, Yang Li, Juexin Wang
, Dong Xu
, Qin Ma
:
scGNN 2.0: a graph neural network tool for imputation and clustering of single-cell RNA-Seq data. Bioinform. 38(23): 5322-5325 (2022) - [j84]Muhammad Hassan
, Yan Wang, Di Wang, Wei Pang
, Kangping Wang, Daixi Li, You Zhou, Dong Xu:
Restorable-inpainting: A novel deep learning approach for shoeprint restoration. Inf. Sci. 600: 22-42 (2022) - [j83]Muhammad Hassan
, Yan Wang, Wei Pang
, Di Wang, Daixi Li, You Zhou, Dong Xu:
IPAS-Net: A deep-learning model for generating high-fidelity shoeprints from low-quality images with no natural references. J. King Saud Univ. Comput. Inf. Sci. 34(6 Part A): 2743-2757 (2022) - [j82]Tianyu Cui, Yiying Dou, Puwen Tan, Zhen Ni, Tianyuan Liu, Duolin Wang, Yan Huang, Kaican Cai, Xiaoyang Zhao, Dong Xu
, Hao Lin
, Dong Wang
:
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. Nucleic Acids Res. 50(D1): 333-339 (2022) - [j81]Yuning Yang
, Jiawen Yu, Zhe Liu
, Xi Wang, Han Wang
, Zhiqiang Ma, Dong Xu
:
An Improved Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 295-304 (2022) - [c74]Han Wang, Hangxu Zhu, Wenhao Li, Ming Liu, Li Zhang, Dong Xu:
Predicting Compound-Protein Interaction by Deepening the Systemic Background via Molecular Network Feature Embedding. BIBM 2022: 346-353 - [c73]Clement Essien
, Fei He, Mark Hannink, Mihail Popescu, Dong Xu:
Extraction of Gene Regulatory Relation Using BioBERT. BIBM 2022: 3351-3355 - [c72]Stuart Aldrich, Micheal Olaolu Arowolo, Fei He, Mihail Popescu, Dong Xu:
Comprehensive Assessment of OCR Tools for Gene Name Recognition in Biological Pathway Figures. BIBM 2022: 3574-3579 - [c71]Yibo Chen, Dong Xu, Mihail Popescu:
Integration of Gene Regulatory Pathways Found in the Literature in a Graph Database. BIBM 2022: 3791-3793 - [c70]Lei Jiang, Yuexu Jiang, Cankun Wang
, Clement Essien
, Juexin Wang, Anjun Ma
, Qin Ma, Dong Xu:
Machine learning development environment for single-cell sequencing data analyses. BIBM 2022: 3824-3826 - [c69]Negin Manshour, Yang Yu, Wenyuan Qin, Fei He, Duolin Wang, Dong Xu:
Evaluating template-based and template-free protein-peptide complex structure prediction using AlphaFold2. BIBM 2022: 3856 - [c68]Junlin Wang, Wenbo Wang, Yi Shang, Dong Xu:
New Heuristic Methods for Protein Model Quality Assessment via Two-Stage Machine Learning and Hierarchical Ensemble. CogMI 2022: 84-90 - 2021
- [j80]Komal Vekaria, Prasad Calyam
, Sai Swathi Sivarathri, Songjie Wang, Yuanxun Zhang, Ashish Pandey, Cong Chen, Dong Xu, Trupti Joshi, Satish S. Nair:
Recommender-as-a-service with chatbot guided domain-science knowledge discovery in a science gateway. Concurr. Comput. Pract. Exp. 33(19) (2021) - [j79]Rui Gao, Shoufeng Li, Xiaohu Shi
, Yanchun Liang, Dong Xu
:
Overlapping Community Detection Based on Membership Degree Propagation. Entropy 23(1): 15 (2021) - [j78]Ye Han, Fei He, Yongbing Chen, Wenyuan Qin, Helong Yu, Dong Xu:
Quality Assessment of Protein Docking Models Based on Graph Neural Network. Frontiers Bioinform. 1 (2021) - [j77]Shuai Zeng, Ziting Mao, Yijie Ren, Duolin Wang, Dong Xu, Trupti Joshi
:
G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers. Nucleic Acids Res. 49(Webserver-Issue): 228-236 (2021) - [j76]Chao Fang, Dong Xu
, Jing Su, Jonathan R. Dry
, Bolan Linghu
:
DeePaN: deep patient graph convolutional network integrating clinico-genomic evidence to stratify lung cancers for immunotherapy. npj Digit. Medicine 4 (2021) - [j75]Matthew Dickinson, Saptarshi Debroy
, Prasad Calyam
, Samaikya Valluripally
, Yuanxun Zhang, Ronny Bazan Antequera, Trupti Joshi, Tommi A. White, Dong Xu
:
Multi-Cloud Performance and Security Driven Federated Workflow Management. IEEE Trans. Cloud Comput. 9(1): 240-257 (2021) - [c67]Fei He, Joshua Thompson, Ziting Mao, Yijie Ren, Yulia Nussbaum, Olha Kholod, Dmitriy Shin, Mark Hannink, Mihail Popescu, Dong Xu:
Identifying Genes and Their Interactions from Pathway Figures and Text in Biomedical Articles. BIBM 2021: 398-405 - [c66]Xiaosong Han, Xiaoran Li, Yanchun Liang, Xinghao Wang, Dong Xu, Renchu Guan:
Acupuncture and Tuina Knowledge Graph for Ancient Literature of Traditional Chinese Medicine. BIBM 2021: 674-677 - [c65]Joshua Thompson, Haoyu Dong, Kai Liu, Fei He, Mihail Popescu, Dong Xu:
A Rule-Based Approach for Generating Synthetic Biological Pathways. CIBB 2021: 105-116 - [c64]Yijie Ren, Fei He, Jing Qu, Yifan Li, Joshua Thompson, Mark Hannink, Mihail Popescu, Dong Xu:
Text Mining Enhancements for Image Recognition of Gene Names and Gene Relations. CIBB 2021: 132-142 - 2020
- [j74]Yuexu Jiang, Yanchun Liang, Duolin Wang, Dong Xu
, Trupti Joshi:
A dynamic programing approach to integrate gene expression data and network information for pathway model generation. Bioinform. 36(1): 169-176 (2020) - [j73]Chao Fang, Zhaoyu Li, Dong Xu
, Yi Shang:
MUFold-SSW: a new web server for predicting protein secondary structures, torsion angles and turns. Bioinform. 36(4): 1293-1295 (2020) - [j72]Bowen Tang, Skyler T. Kramer, Meijuan Fang, Yingkun Qiu, Zhen Wu, Dong Xu
:
A self-attention based message passing neural network for predicting molecular lipophilicity and aqueous solubility. J. Cheminformatics 12(1): 15 (2020) - [j71]Duolin Wang, Dongpeng Liu
, Jiakang Yuchi, Fei He, Yuexu Jiang, Siteng Cai, Jingyi Li, Dong Xu
:
MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization. Nucleic Acids Res. 48(Webserver-Issue): W140-W146 (2020) - [j70]Wenbo Wang
, Junlin Wang, Dong Xu
, Yi Shang
:
Two New Heuristic Methods for Protein Model Quality Assessment. IEEE ACM Trans. Comput. Biol. Bioinform. 17(4): 1430-1439 (2020) - [j69]Ming Liu
, Zhiqian Zhou
, Penghui Shang, Dong Xu
:
Fuzzified Image Enhancement for Deep Learning in Iris Recognition. IEEE Trans. Fuzzy Syst. 28(1): 92-99 (2020) - [i4]Muhammad Hassan, Yan Wang, Di Wang, Daixi Li, Yanchun Liang, You Zhou, Dong Xu:
Deep Learning Analysis and Age Prediction from Shoeprints. CoRR abs/2011.03794 (2020)
2010 – 2019
- 2019
- [j68]Duolin Wang, Yanchun Liang, Dong Xu:
Capsule network for protein post-translational modification site prediction. Bioinform. 35(14): 2386-2394 (2019) - [j67]Liu Yang, Dong Xu:
Sliding mode control with PI-based saturation for nano-positioning. Int. J. Wirel. Mob. Comput. 16(3): 204-210 (2019) - [j66]Wenbo Wang
, Zhaoyu Li, Junlin Wang, Dong Xu, Yi Shang
:
PSICA: a fast and accurate web service for protein model quality analysis. Nucleic Acids Res. 47(Webserver-Issue): W443-W450 (2019) - [j65]Son P. Nguyen
, Zhaoyu Li
, Dong Xu
, Yi Shang
:
New Deep Learning Methods for Protein Loop Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. 16(2): 596-606 (2019) - [j64]Chao Fang
, Yi Shang
, Dong Xu
:
Prediction of Protein Backbone Torsion Angles Using Deep Residual Inception Neural Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 16(3): 1020-1028 (2019) - [c63]Yulia Innokenteva, Olha Kholod, Fei He, Duolin Wang, Richard D. Hammer, Dong Xu, Dmitriy Shin:
An Informatics Framework for Knowledge Representation and Reconciliation of Disease Pathways. AMIA 2019 - [c62]Fei He, Duolin Wang, Yulia Innokenteva, Olha Kholod
, Dmitriy Shin, Dong Xu:
Extracting Molecular Entities and Their Interactions from Pathway Figures Based on Deep Learning. BCB 2019: 397-404 - [c61]Han Wang
, Yuning Yang, Jiawen Yu, Xi Wang, Dawei Zhao, Dong Xu, Pingping Sun:
DMCTOP: Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network. BIBM 2019: 36-43 - [c60]Fei He, Rui Wang, Yanxin Gao, Duolin Wang, Yang Yu, Dong Xu, Xiaowei Zhao:
Protein Ubiquitylation and Sumoylation Site Prediction Based on Ensemble and Transfer Learning. BIBM 2019: 117-123 - [c59]Fei He, Duolin Wang, Yulia Innokenteva, Olha Kholod, Dmitriy Shin, Dong Xu:
Extracting Molecular Entities and Their Interactions from Pathway Figures Based on Deep Learning. BIBM 2019: 1191-1193 - [c58]Clement Essien
, Duolin Wang
, Dong Xu:
Capsule Network for Predicting Zinc Binding Sites in Metalloproteins. BIBM 2019: 2337-2341 - [c57]Xue Gu, Ziyao Meng, Yanchun Liang, Dong Xu, Han Huang, Xiaosong Han
, Chunguo Wu:
ESAE: Evolutionary Strategy-Based Architecture Evolution. BIC-TA (1) 2019: 193-208 - [c56]Yuexu Jiang, Duolin Wang, Dong Xu:
DeepDom: Predicting protein domain boundary from sequence alone using stacked bidirectional. PSB 2019: 66-75 - [c55]Pericles S. Giannaris, Cynthia Tang, Olha Kholod, Steve Hanson, Chi-Ren Shyu, Richard D. Hammer, Dong Xu, Dmitriy Shin:
Modeling of Contextual Information in Knowledge Graphs of Diagnostic Reports. SWH@ISWC 2019: 20-29 - [i3]Ming Liu, Dongpeng Liu, Guangyu Sun, Yi Zhao, Duolin Wang, Fangxing Liu, Xiang Fang, Qing He, Dong Xu:
Detection of Malfunctioning Smart Electricity Meter. CoRR abs/1907.11377 (2019) - 2018
- [j63]Juexin Wang, Robert Sheridan, Selçuk Onur Sümer, Nikolaus Schultz, Dong Xu, Jianjiong Gao
:
G2S: a web-service for annotating genomic variants on 3D protein structures. Bioinform. 34(11): 1949-1950 (2018) - [j62]R. Shyama Prasad Rao
, Ning Zhang
, Dong Xu, Ian Max Møller:
CarbonylDB: a curated data-resource of protein carbonylation sites. Bioinform. 34(14): 2518-2520 (2018) - [j61]Donghui Wang, Yanchun Liang, Dong Xu, Xiaoyue Feng, Renchu Guan
:
A content-based recommender system for computer science publications. Knowl. Based Syst. 157: 1-9 (2018) - [j60]Saad M. Khan
, Jason E. Denney, Michael X. Wang, Dong Xu:
Whole-exome sequencing and microRNA profiling reveal PI3K/AKT pathway's involvement in juvenile myelomonocytic leukemia. Quant. Biol. 6(1): 85-97 (2018) - [j59]Ronny Bazan Antequera, Prasad Calyam
, Saptarshi Debroy, Longhai Cui, Sripriya Seetharam, Matthew Dickinson, Trupti Joshi, Dong Xu
, Tsegereda Beyene:
ADON: Application-Driven Overlay Network-as-a-Service for Data-Intensive Science. IEEE Trans. Cloud Comput. 6(3): 640-655 (2018) - [c54]Yuexu Jiang, Duolin Wang, Dong Xu, Trupti Joshi:
Integrating Gene Expression Data and Pathway Knowledge for In Silico Hypothesis Generation with IMPRes. BIBM 2018: 102-107 - [c53]Shuai Zeng, Zhen Lyu, Siva Ratna Kumari Narisetti
, Dong Xu, Trupti Joshi:
Knowledge Base Commons (KBCommons) v1.0: A multi OMICS' web-based data integration framework for biological discoveries. BIBM 2018: 589-594 - [c52]Sadia Akter, Dong Xu, Susan C. Nagel, Trupti Joshi:
A Data Mining Approach for Biomarker Discovery Using Transcriptomics in Endometriosis. BIBM 2018: 969-972 - [c51]Yuanxun Zhang, Prasad Calyam, Trupti Joshi, Satish S. Nair, Dong Xu:
Domain-specific Topic Model for Knowledge Discovery through Conversational Agents in Data Intensive Scientific Communities. IEEE BigData 2018: 4886-4895 - 2017
- [j58]Jianjiong Gao
, Andreas Prlic
, Chunxiao Bi, Wolfgang Bluhm, Dimitris Dimitropoulos, Dong Xu, Philip E. Bourne, Peter W. Rose
:
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank. Bioinform. 33(13): 2047-2049 (2017) - [j57]Duolin Wang, Shuai Zeng, Chunhui Xu, Wangren Qiu, Yanchun Liang, Trupti Joshi, Dong Xu:
MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction. Bioinform. 33(24): 3909-3916 (2017) - [j56]Xiaoyue Feng, Yanchun Liang, Xiaohu Shi, Dong Xu, Xu Wang, Renchu Guan
:
Overfitting Reduction of Text Classification Based on AdaBELM. Entropy 19(7): 330 (2017) - [j55]Li Zhang, Han Wang
, Lun Yan, Lingtao Su, Dong Xu:
OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method. J. Comput. Biol. 24(3): 217-228 (2017) - [c50]Fei He, Lingling Bao, Rui Wang, Jiagen Li, Dong Xu, Xiaowei Zhao:
A multimodal deep architecture for large-scale protein ubiquitylation site prediction. BIBM 2017: 108-113 - [c49]Yuexu Jiang, Yanchun Liang, Duolin Wang, Dong Xu, Trupti Joshi:
IMPRes: Integrative MultiOmics pathway resolution algorithm and tool. BIBM 2017: 2260 - [c48]Saad M. Khan, Gavin C. Conant
, Dong Xu:
Effects of evolutionary pressure on histone modifications. BIBM 2017: 2267 - [c47]Chunhui Xu, Wangren Qiu, Xuan Xiao, Dong Xu:
Computational prediction of ubiquitination protein using evolutionary profiles and functional domains. BIBM 2017: 2296 - [c46]Penghui Shang, Duolin Wang, Dongpeng Liu
, Dong Xu:
A deep-learning framework for amidation site prediction. BIBM 2017: 2302 - [c45]Lingtao Su, Dong Xu, Guixia Liu:
A new method for disease-related gene prioritization. BIBM 2017: 2315 - [c44]Juexin Wang, Zhen Lyu, Shakhawat Hossain, Gary Stacey, Dong Xu, Trupti Joshi:
SoyTSN: A web-based prediction tool for soybean tissue specific network within SoyKB. BIBM 2017: 2326 - [c43]Chao Fang, Yi Shang, Dong Xu:
A New Deep Neighbor Residual Network for Protein Secondary Structure Prediction. ICTAI 2017: 66-71 - [c42]Zhaoyu Li, Son P. Nguyen, Dong Xu, Yi Shang:
Protein Loop Modeling Using Deep Generative Adversarial Network. ICTAI 2017: 1085-1091 - [i2]Chao Fang, Yi Shang, Dong Xu:
MUFold-SS: Protein Secondary Structure Prediction Using Deep Inception-Inside-Inception Networks. CoRR abs/1709.06165 (2017) - 2016
- [j54]Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning
, Shiwei Sun, Shuai Cheng Li
, Dongbo Bu:
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition. Bioinform. 32(3): 462-464 (2016) - [j53]Yang Liu, Saad M. Khan
, Juexin Wang, Mats Rynge
, Yuanxun Zhang, Shuai Zeng, Shiyuan Chen, João V. Maldonado dos Santos, Babu Valliyodan
, Prasad Calyam, Nirav C. Merchant
, Henry T. Nguyen, Dong Xu, Trupti Joshi
:
PGen: large-scale genomic variations analysis workflow and browser in SoyKB. BMC Bioinform. 17(S-13): 337 (2016) - [j52]Hao Zhang
, Yanpu Li, Yuanning Liu, Haiming Liu
, Hongyu Wang, Wen Jin, Yanmei Zhang, Chao Zhang
, Dong Xu:
Role of plant MicroRNA in cross-species regulatory networks of humans. BMC Syst. Biol. 10: 60 (2016) - [j51]Hongbo Li
, Yanchun Liang, Ning Zhang
, Jinsong Guo, Dong Xu, Zhanshan Li:
Improving degree-based variable ordering heuristics for solving constraint satisfaction problems. J. Heuristics 22(2): 125-145 (2016) - [c41]Matthew Dickinson, Saptarshi Debroy, Prasad Calyam, Samaikya Valluripally, Yuanxun Zhang, Trupti Joshi, Dong Xu:
End-to-End Security Formalization and Alignment for Federated Workflow Management. CLOUD 2016: 59-67 - [c40]Zainab Al-Taie, Nattaphon Thanintorn, Ilker Ersoy, Richard D. Hammer, Dong Xu, Trupti Joshi, Dmitriy Shin:
Complexity Reduction and Visualization of RDF Knowledge Networks for Precision medicine. AMIA 2016 - [c39]Guitao Cao, Jie Ding, Ye Duan, Liping Tu, Jiatuo Xu, Dong Xu:
Classification of tongue images based on doublet and color space dictionary. BIBM 2016: 1170-1175 - [c38]Dan Meng, Guitao Cao, Ye Duan, Minghua Zhu, Liping Tu, Jiatuo Xu, Dong Xu:
A deep tongue image features analysis model for medical application. BIBM 2016: 1918-1922 - [c37]Nattaphon Thanintorn, Juexin Wang, Ilker Ersoy, Zainab Al-Taie, Yuexu Jiang, Duolin Wang, Megha Verma, Trupti Joshi, Richard D. Hammer, Dong Xu, Dmitriy Shin:
RDF Sketch Maps - Knowledge Complexity Reduction for Precision Medicine Analytics. PSB 2016: 417-428 - [r1]Qiuming Yao, Jianjiong Gao, Dong Xu:
Musite: Tool for Predicting Protein Phosphorylation Sites. Encyclopedia of Algorithms 2016: 1393-1397 - 2015
- [j50]Dong Xu, Kun Huang, Jeanette Schmidt:
Guest Editors Introduction to the Special Issue on Software and Databases. IEEE ACM Trans. Comput. Biol. Bioinform. 12(4): 793-794 (2015) - 2014
- [j49]Rui Liu
, Xiangtian Yu, Xiaoping Liu
, Dong Xu, Kazuyuki Aihara, Luonan Chen:
Identifying critical transitions of complex diseases based on a single sample. Bioinform. 30(11): 1579-1586 (2014) - [j48]Trupti Joshi, Robert Williamson, Kapil Patil, Suwit Viyanon, Xiangge Li, Yufu Zhang, Wenchuan Qi, Dong Li, Jeremy Zimmer, Uday Illindala, Shawn Foley, Robert Campbell, Ye Duan, Dong Xu:
Virtual physical examination (VPE): a multimedia system for education in medicine. Int. J. Funct. Informatics Pers. Medicine 4(3/4): 181-197 (2014) - [j47]Qiuming Yao, Huangyi Ge, Shangquan Wu, Ning Zhang
, Wei Chen, Chunhui Xu, Jianjiong Gao, Jay J. Thelen
, Dong Xu:
P3DB 3.0: From plant phosphorylation sites to protein networks. Nucleic Acids Res. 42(Database-Issue): 1206-1213 (2014) - [j46]Trupti Joshi
, Michael R. Fitzpatrick, Shiyuan Chen, Yang Liu, Hongxin Zhang, Ryan Z. Endacott, Eric C. Gaudiello, Gary Stacey, Henry T. Nguyen, Dong Xu:
Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding. Nucleic Acids Res. 42(Database-Issue): 1245-1252 (2014) - [c36]Yan Chen, Yi Shang, Dong Xu:
Multi-dimensional scaling and MODELLER-based evolutionary algorithms for protein model refinement. IEEE Congress on Evolutionary Computation 2014: 1038-1045 - [c35]Son P. Nguyen, Yi Shang, Dong Xu:
DL-PRO: A novel deep learning method for protein model quality assessment. IJCNN 2014: 2071-2078 - [i1]Jianjiong Gao
, Chao Zhang
, Martijn P. van Iersel
, Li Zhang, Dong Xu, Nikolaus Schultz
, Alexander R. Pico
:
BridgeDb app: unifying identifier mapping services for Cytoscape. F1000Research 3: 148 (2014) - 2013
- [j45]Chao Zhang
, Jiguang Wang
, Kristina Hanspers, Dong Xu, Luonan Chen, Alexander R. Pico
:
NOA: a cytoscape plugin for network ontology analysis. Bioinform. 29(16): 2066-2067 (2013) - [j44]Trupti Joshi
, Babu Valliyodan
, Jeng-Hung Wu, Suk-Ha Lee, Dong Xu, Henry T. Nguyen:
Genomic differences between cultivated soybean, G. max and its wild relative G. soja. BMC Genom. 14(S-1): S5 (2013) - [j43]Hao Zhang
, Zhi Li, Yanpu Li, Yuanning Liu, Junxin Liu, Xin Li, Tingjie Shen, Yunna Duan, Minggang Hu, Dong Xu:
A computational method for predicting regulation of human microRNAs on the influenza virus genome. BMC Syst. Biol. 7(S-2): S3 (2013) - [j42]Qingguo Wang
, Charles Shang, Dong Xu, Yi Shang:
New MDS and Clustering Based Algorithms for protein Model Quality Assessment and Selection. Int. J. Artif. Intell. Tools 22(5) (2013) - [j41]Yuanning Liu, Ya-Ping Chang, Dong Xu, Zhi Li, Hao Zhang
, Jie Li, Mingyao Tian:
Optimised design of siRNA based on multi-featured comparison and analysis of H1N1 virus. Int. J. Data Min. Bioinform. 7(4): 345-357 (2013) - [j40]Yuanning Liu, Yaping Chang, Chao Zhang
, Qingkai Wei, Jingbo Chen, Hui-Ling Chen
, Dong Xu:
Influence of mRNA Features on siRNA Interference Efficacy. J. Bioinform. Comput. Biol. 11(3) (2013) - [c34]Trupti Joshi, Michael R. Fitzpatrick, Shiyuan Chen, Yang Liu, Hongxin Zhang, Ryan Z. Endacott, Eric C. Gaudiello, Gary Stacey, Henry T. Nguyen, Dong Xu:
Soybean knowledge base (SoyKB): Bridging the gap between soybean translational genomics and breeding. BIBM 2013: 42-44 - 2012