
Yixue Li
Yi-Xue Li
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2020 – today
- 2020
- [j91]Shiyan Li, Hongxin Liu, Shiyu Bian, Xianzheng Sha, Yixue Li, Yin Wang:
The accelerated aging model reveals critical mechanisms of late-onset Parkinson's disease. BioData Min. 13(1): 4 (2020) - [j90]Leilei Wu, Qinfang Deng, Ze Xu, Songwen Zhou, Chao Li, Yi-Xue Li:
A novel virtual barcode strategy for accurate panel-wide variant calling in circulating tumor DNA. BMC Bioinform. 21(1): 127 (2020)
2010 – 2019
- 2019
- [j89]Shichao Pang
, Junchen Yang, Yilei Zhao, Yixue Li, Jingfang Wang:
Computational prediction and functional analysis of arsenic-binding proteins in human cells. Quant. Biol. 7(3): 182-189 (2019) - 2018
- [j88]Lu Zhou, Qingyu Xiao, Jie Bi, Zhen Wang, Yixue Li:
RabGTD: a comprehensive database of rabbit genome and transcriptome. Database J. Biol. Databases Curation 2018: bay075 (2018) - [j87]Wentao Dai, Quanxue Li, Bing-Ya Liu, Yi-Xue Li, Yuan-Yuan Li:
Differential networking meta-analysis of gastric cancer across Asian and American racial groups. BMC Syst. Biol. 12(4): 17-28 (2018) - 2017
- [j86]Zhen Li, Qianlan Yao, Songjian Zhao, Zhen Wang, Yixue Li:
Protein coding gene CRNKL1 as a potential prognostic biomarker in esophageal adenocarcinoma. Artif. Intell. Medicine 76: 1-6 (2017) - [j85]Quanxue Li, Junyi Li, Wentao Dai, Yi-Xue Li, Yuan-Yuan Li:
Differential regulation analysis reveals dysfunctional regulatory mechanism involving transcription factors and microRNAs in gastric carcinogenesis. Artif. Intell. Medicine 77: 12-22 (2017) - [j84]Ru-Dong Li, Guohui Ding, Yixue Li:
Virtualisation of gene knockout experiments based on kinetic modelling: Escherichia coli as an algorithmic case. Int. J. Comput. Biol. Drug Des. 10(2): 157-188 (2017) - [j83]Zhen Wang, Zefeng Wang, Yixue Li:
Strategic planning for national biomedical big data infrastructure in China. Quant. Biol. 5(3): 272-275 (2017) - 2016
- [j82]Zhi Liu
, Tuantuan Gui, Zhen Wang, Hong Li, Yunhe Fu, Xiao Dong, Yixue Li:
cisASE: a likelihood-based method for detecting putative cis-regulated allele-specific expression in RNA sequencing data. Bioinform. 32(21): 3291-3297 (2016) - [j81]Jing Yang, Su-Juan Wu, Shao-You Yang, Jia-Wei Peng, Shi-Nuo Wang, Fu-Yan Wang, Yu-Xing Song, Ting Qi, Yi-Xue Li, Yuan-Yuan Li:
DNetDB: The human disease network database based on dysfunctional regulation mechanism. BMC Syst. Biol. 10: 36 (2016) - [j80]Wentao Dai, Aiping Wu, Liang-Xiao Ma, Yi-Xue Li, Taijiao Jiang, Yuan-Yuan Li:
A novel index of protein-protein interface propensity improves interface residue recognition. BMC Syst. Biol. 10(4): 381-392 (2016) - [j79]Su-Juan Wu, Junyi Li, Mushui Cao, Jing Yang, Yi-Xue Li, Yuan-Yuan Li:
A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes. BMC Syst. Biol. 10(S-3): 71 (2016) - [c11]Yi-Xue Li:
Whole genome sequencing of disease animal models. BIBM 2016: 2 - 2015
- [j78]Yingli Lv, Shuyuan Wang, Fanlin Meng, Lei Yang, Zhifeng Wang, Jing Wang, Xiaowen Chen, Wei Jiang, Yixue Li, Xia Li:
Identifying novel associations between small molecules and miRNAs based on integrated molecular networks. Bioinform. 31(22): 3638-3644 (2015) - [j77]Jing Yang, Su-Juan Wu, Yi-Xue Li, Yuan-Yuan Li:
DSviaDRM: an R package for estimating disease similarity via dysfunctional regulation mechanism. Bioinform. 31(23): 3870-3872 (2015) - [j76]Hong Sun, Shuang Yang, Liangliang Tun, Yixue Li:
IAOseq: inferring abundance of overlapping genes using RNA-seq data. BMC Bioinform. 16(S-1): S3 (2015) - [j75]Bo Sun, Menghuan Zhang
, Peng Cui
, Hong Li, Jia Jia Dong, Yixue Li, Lu Xie:
Nonsynonymous Single-Nucleotide Variations on Some Posttranslational Modifications of Human Proteins and the Association with Diseases. Comput. Math. Methods Medicine 2015: 124630:1-124630:12 (2015) - [j74]Tiancheng Liu, Lin Yu, Lei Liu, Hong Li, Yixue Li:
Comparative Transcriptomes and EVO-DEVO Studies Depending on Next Generation Sequencing. Comput. Math. Methods Medicine 2015: 896176:1-896176:10 (2015) - [j73]Tuantuan Gui, Xiao Dong, Ru-Dong Li, Yixue Li, Zhen Wang:
Identification of Hepatocellular Carcinoma-Related Genes with a Machine Learning and Network Analysis. J. Comput. Biol. 22(1): 63-71 (2015) - 2014
- [j72]Jing Li, Jia Jia, Hong Li, Jian Yu, Han Sun, Ying He, Daqing Lv, Xiaojuan Yang, Michael O. Glocker, Liang-Xiao Ma, Jiabei Yang, Ling Li, Wei Li, Guoqing Zhang
, Qian Liu, Yixue Li, Lu Xie:
SysPTM 2.0: an updated systematic resource for post-translational modification. Database J. Biol. Databases Curation 2014 (2014) - [j71]Chao Li, Xiao Dong, Haiwei Fan, Chuan Wang, Guohui Ding, Yixue Li:
The 3DGD: a database of genome 3D structure. Bioinform. 30(11): 1640-1642 (2014) - [j70]Yixue Li, Luonan Chen:
Big Biological Data: Challenges and Opportunities. Genom. Proteom. Bioinform. 12(5): 187-189 (2014) - 2013
- [j69]Huayong Xu, Hui Yu, Kang Tu, Qianqian Shi, Chaochun Wei
, Yuan-Yuan Li, Yi-Xue Li:
cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets. BMC Syst. Biol. 7(S-2): S7 (2013) - [j68]Shan Cong, Xiao-Tu Ma, Yi-Xue Li, Jing-Fang Wang
:
Structural Basis for the Mutation-Induced Dysfunction of Human CYP2J2: A Computational Study. J. Chem. Inf. Model. 53(6): 1350-1357 (2013) - [j67]Adhemar Zerlotini, Eric R. G. R. Aguiar, Fudong Yu
, Huayong Xu, Yixue Li, Neil D. Young
, Robin B. Gasser
, Anna V. Protasio
, Matthew Berriman, David S. Roos
, Jessica C. Kissinger
, Guilherme C. Oliveira
:
SchistoDB: an updated genome resource for the three key schistosomes of humans. Nucleic Acids Res. 41(Database-Issue): 728-731 (2013) - [c10]Piyush Diwan, Patricia Carey, Eric Franz, Yixue Li, Thomas Bitterman, David E. Hudak, Rajiv Ramnath:
Applying software product line engineering in building web portals for supercomputing services. SAC 2013: 1765-1771 - 2012
- [j66]Hui Yu, Kang Tu, Yi-Jie Wang, Jun-Zhe Mao, Lu Xie, Yuan-Yuan Li, Yi-Xue Li:
Combinatorial network of transcriptional regulation and microRNA regulation in human cancer. BMC Syst. Biol. 6: 61 (2012) - [j65]Chuanli Wang, Longyun Guo, Yixue Li, Zhuo Wang:
Systematic Comparison of C3 and C4 Plants Based on Metabolic Network Analysis. BMC Syst. Biol. 6(S-2): S9 (2012) - [j64]Yin Wang, Yuhua Zhou, Yixue Li, Zongxin Ling
, Yan Zhu, Xiaokui Guo, Hong Sun:
An improved dimensionality reduction method for meta-transcriptome indexing based diseases classification. BMC Syst. Biol. 6(S-3): S12 (2012) - [j63]Shu-Hao Yu, Lulu Zheng, Yun Li, Chunyan Li, Chenchen Ma, Yixue Li, Xuan Li, Pei Hao:
A cross-species analysis method to analyze animal models' similarity to human's disease state. BMC Syst. Biol. 6(S-3): S18 (2012) - [j62]Yajun Wang, Yao Yu, Bohu Pan, Pei Hao, Yixue Li, Zhifeng Shao, Xiaogang Xu, Xuan Li:
Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome. BMC Syst. Biol. 6(S-3): S21 (2012) - [j61]Ying Wang
, Xiaolin Wu, Dong-Qing Wei, Yi-Xue Li, Jing-Fang Wang
:
Autoinhibitory Mechanism for the Mutation-Induced Impaired FGF9 Signaling. J. Chem. Inf. Model. 52(9): 2422-2429 (2012) - [j60]Ying He, Menghuan Zhang, Yuanhu Ju, Zhong-Hao Yu, Daqing Lv, Han Sun, Weilan Yuan, Fei He, Jianshe Zhang, Hong Li, Jing Li, Rui Wang-Sattler
, Yixue Li, Guoqing Zhang
, Lu Xie:
dbDEPC 2.0: updated database of differentially expressed proteins in human cancers. Nucleic Acids Res. 40(Database-Issue): 964-971 (2012) - [j59]Xin Zhao, Qi Liu, Qingqing Cai, Yanyun Li, Congjian Xu, Yixue Li, Zuofeng Li, Xiaoyan Zhang:
Dr.VIS: a database of human disease-related viral integration sites. Nucleic Acids Res. 40(Database-Issue): 1041-1046 (2012) - [c9]Huayong Xu, Hui Yu, Kang Tu, Qianqian Shi, Chaochun Wei
, Yuanyuan Li, Yixue Li:
cGRNexp: a web platform for building combinatorial gene regulation networks based on user-uploaded gene expression datasets. ISB 2012: 113-117 - [c8]Bin Kang, Yuan-Yuan Li, Yixue Li:
Anti-clustering of circadian gene expression in mouse liver genome. ISB 2012: 273-279 - 2011
- [j58]Qianghu Wang, Jie Sun
, Meng Zhou
, Haixiu Yang, Yan Li, Xiang Li, Sali Lv, Xia Li, Yixue Li:
A novel network-based method for measuring the functional relationship between gene sets. Bioinform. 27(11): 1521-1528 (2011) - [j57]Kailin Tang, Ruixin Zhu
, Yixue Li, Zhi-Wei Cao:
Discrimination of Approved Drugs from Experimental Drugs by Learning Methods. BMC Bioinform. 12: 157 (2011) - [j56]Hui Yu, Bao-Hong Liu, Zhi-Qiang Ye
, Chun Li
, Yi-Xue Li, Yuan-Yuan Li:
Link-based Quantitative Methods to Identify Differentially Coexpressed Genes and Gene Pairs. BMC Bioinform. 12: 315 (2011) - [j55]Yan Ji, Yixiang Shi, Guohui Ding, Yixue Li:
A new strategy for better genome assembly from very short reads. BMC Bioinform. 12: 493 (2011) - [j54]Guangyong Zheng, Haibo Wang, Chaochun Wei
, Yixue Li:
iGepros: an integrated gene and protein annotation server for biological nature exploration. BMC Bioinform. 12(S-14): S6 (2011) - [j53]Ru-Dong Li, Yuan-Yuan Li, Lingyi Lu, Cong Ren, Yi-Xue Li, Lei Liu:
An improved kinetic model for the acetone-butanol-ethanol pathway of Clostridium acetobutylicum and model-based perturbation analysis. BMC Syst. Biol. 5(S-1): S12 (2011) - [j52]Tao Huang, Lei Liu, Qi Liu, Guohui Ding, Yejun Tan, Zhidong Tu, Yixue Li, Hongyue Dai, Lu Xie:
The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma. Int. J. Comput. Biol. Drug Des. 4(1): 5-18 (2011) - [j51]Yun Li, Kang Tu, Siyuan Zheng, Jingfang Wang
, Yixue Li, Pei Hao, Xuan Li:
Association of Feature Gene Expression with Structural Fingerprints of Chemical Compounds. J. Bioinform. Comput. Biol. 9(4): 503-519 (2011) - [j50]Jue Li, Dong-Qing Wei
, Jing-Fang Wang
, Yi-Xue Li:
A Negative Cooperativity Mechanism of Human CYP2E1 Inferred from Molecular Dynamics Simulations and Free Energy Calculations. J. Chem. Inf. Model. 51(12): 3217-3225 (2011) - [j49]Zhimin Huang
, Liang Zhu, Yan Cao, Geng Wu, Xinyi Liu, Yingyi Chen, Qi Wang, Ting Shi, Yaxue Zhao, Yuefei Wang, Weihua Li, Yixue Li, Haifeng Chen, Guoqiang Chen, Jian Zhang:
ASD: a comprehensive database of allosteric proteins and modulators. Nucleic Acids Res. 39(Database-Issue): 663-669 (2011) - [j48]Hao Ye, Li Ye, Hong Kang, Duanfeng Zhang, Lin Tao, Kailin Tang, Xueping Liu, Ruixin Zhu
, Qi Liu, Yu Zong Chen
, Yixue Li, Zhi-Wei Cao:
HIT: linking herbal active ingredients to targets. Nucleic Acids Res. 39(Database-Issue): 1055-1059 (2011) - [c7]Kaiyan Feng, Junhui Gao, Kairui Feng, Lei Liu, Yixue Li:
Active and Passive Nearest Neighbor Algorithm: A Newly-Developed Supervised Classifier. ICIC (2) 2011: 189-196 - [e1]Limin Angela Liu, Dong-Qing Wei, Yixue Li, Huimin Lei:
Handbook of Research on Computational and Systems Biology - Interdisciplinary Applications. IGI Global 2011, ISBN 978-1-60960-491-2 [contents] - 2010
- [j47]Bao-Hong Liu, Hui Yu, Kang Tu, Chun Li
, Yi-Xue Li, Yuan-Yuan Li:
DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data. Bioinform. 26(20): 2637-2638 (2010) - [j46]Yun-Qin Chen, Hui Yu, Yi-Xue Li, Yuan-Yuan Li:
Sorting out inherent features of head-to-head gene pairs by evolutionary conservation. BMC Bioinform. 11(S-11): S16 (2010) - [j45]Qi Liu, Yejun Tan, Tao Huang, Guohui Ding, Zhidong Tu, Lei Liu, Yixue Li, Hongyue Dai, Lu Xie:
TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information. BMC Bioinform. 11(S-11): S5 (2010) - [j44]Yixiang Shi, Yi-Xue Li, Yuan-Yuan Li:
Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution. BMC Bioinform. 11(S-11): S9 (2010) - [j43]Hong Li, Ying He, Guohui Ding, Chuan Wang, Lu Xie, Yixue Li:
dbDEPC: a database of Differentially Expressed Proteins in human Cancers. Nucleic Acids Res. 38(Database-Issue): 658-664 (2010) - [c6]Tao Huang, Guohui Ding, Yixue Li, Lei Liu, Eugene Tan, Hongyue Dai, Qi Liu, Zhidong Tu, Lu Xie:
Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma. BCB 2010: 502-507
2000 – 2009
- 2009
- [j42]Zhen Wang, Guohui Ding, Zhong-Hao Yu, Lei Liu, Yixue Li:
CHSMiner: a GUI tool to identify chromosomal homologous segments. Algorithms Mol. Biol. 4 (2009) - [j41]Hui Yu, Fudong Yu
, Guoqing Zhang
, Xiang Shen, Yun-Qin Chen, Yuan-Yuan Li, Yi-Xue Li:
DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels. Database J. Biol. Databases Curation 2009 (2009) - [j40]Hong Li, Guohui Ding, Lu Xie, Yixue Li:
PAnnBuilder: an R package for assembling proteomic annotation data. Bioinform. 25(8): 1094-1095 (2009) - [j39]Pei Hao, Siyuan Zheng, Jie Ping, Kang Tu, Christian Gieger
, Rui Wang-Sattler
, Yang Zhong, Yixue Li:
Human gene expression sensitivity according to large scale meta-analysis. BMC Bioinform. 10(S-1) (2009) - [j38]Yao Yu, Kang Tu, Siyuan Zheng, Yun Li, Guohui Ding, Jie Ping, Pei Hao, Yixue Li:
GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction. BMC Bioinform. 10: 264 (2009) - [j37]Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng
, Haixu Tang:
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. J. Comput. Biol. 16(8): 1183-1193 (2009) - [j36]Guohui Ding, Peter Lorenz
, Michael Kreutzer, Yixue Li, Hans-Jürgen Thiesen:
SysZNF: the C2H2 zinc finger gene database. Nucleic Acids Res. 37(Database-Issue): 267-273 (2009) - [j35]Su-Jun Li, Mao Peng
, Hong Li, Boshu Liu, Chuan Wang, Jia-Rui Wu, Yi-Xue Li, Rong Zeng:
Sys-BodyFluid: a systematical database for human body fluid proteome research. Nucleic Acids Res. 37(Database-Issue): 907-912 (2009) - [j34]Hong Xi, Jongsun Park
, Guohui Ding, Yong-Hwan Lee, Yixue Li:
SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry. Nucleic Acids Res. 37(Database-Issue): 913-920 (2009) - 2008
- [j33]Pedro Alves, Randy J. Arnold, David E. Clemmer, Yixue Li, James P. Reilly, Quanhu Sheng
, Haixu Tang, Zhiyin Xun, Rong Zeng, Predrag Radivojac:
Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinform. 24(1): 102-109 (2008) - [j32]Siyuan Zheng
, Jia Sheng, Chuan Wang, Xiaojing Wang, Yao Yu, Yun Li, Alex Michie, Jianliang Dai, Yang Zhong, Pei Hao, Lei Liu, Yixue Li:
MPSQ: a web tool for protein-state searching. Bioinform. 24(20): 2412-2413 (2008) - [j31]Guangyong Zheng, Kang Tu, Qing Yang, Yun Xiong, Chaochun Wei
, Lu Xie, Yangyong Zhu, Yixue Li:
ITFP: an integrated platform of mammalian transcription factors. Bioinform. 24(20): 2416-2417 (2008) - [j30]Qingwei Xu, Yixiang Shi, Qiang Lu, Guoqing Zhang
, Qing-ming Luo, Yixue Li:
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations. BMC Bioinform. 9(S-1) (2008) - [j29]Xiaojing Wang, Di Wu, Siyuan Zheng, Jing Sun, Lin Tao, Yixue Li, Zhi-Wei Cao:
Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies. BMC Bioinform. 9(S-12) (2008) - [j28]Guangyong Zheng, Ziliang Qian, Qing Yang, Chaochun Wei
, Lu Xie, Yangyong Zhu, Yixue Li:
The combination approach of SVM and ECOC for powerful identification and classification of transcription factor. BMC Bioinform. 9 (2008) - [j27]Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei Fan, Chuan Wang, Dan Yang, Yixue Li:
EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information. Nucleic Acids Res. 36(Database-Issue): 255-262 (2008) - [j26]Jian Cui, Peng Li, Guang Li, Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yi-Xue Li, Tieliu Shi:
AtPID: Arabidopsis thaliana protein interactome database - an integrative platform for plant systems biology. Nucleic Acids Res. 36(Database-Issue): 999-1008 (2008) - [j25]Bin Kang, Yuan-Yuan Li, Xiao Chang, Lei Liu, Yi-Xue Li:
Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition on Circadian Oscillation. PLoS Comput. Biol. 4(3) (2008) - [c5]Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang:
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. RECOMB 2008: 167-180 - 2007
- [j24]Ziliang Qian, Lingyi Lu, Xiao-Jun Liu, Yu-Dong Cai
, Yixue Li:
An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization. Bioinform. 23(18): 2449-2454 (2007) - [j23]Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao:
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. BMC Bioinform. 8 (2007) - [j22]Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li:
Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data. BMC Bioinform. 8 (2007) - [j21]Jing Zhao
, Guo-Hui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li:
Modular co-evolution of metabolic networks. BMC Bioinform. 8 (2007) - [j20]Lingyi Lu, Ziliang Qian, Yu-Dong Cai
, Yixue Li:
ECS: An automatic enzyme classifier based on functional domain composition. Comput. Biol. Chem. 31(3): 226-232 (2007) - [c4]Xiaojing Wang, Wu Wei, Siyuan Zheng, Zhi-Wei Cao, Yixue Li:
Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis for Human Immunoglobulin. International Conference on Computational Science (2) 2007: 363-369 - [c3]Yixue Li:
Biological data integration and high-performance computing. China HPC 2007: 51-61 - 2006
- [j19]Yuan-Yuan Li, Lei Qin, Zong-Ming Guo, Lei Liu, Hao Xu, Pei Hao, Jiong Su, Yixiang Shi, Wei-Zhong He, Yi-Xue Li:
In silico discovery of human natural antisense transcripts. BMC Bioinform. 7: 18 (2006) - [j18]Xiaojing Yu, Chuan Wang, Yixue Li:
Classification of protein quaternary structure by functional domain composition. BMC Bioinform. 7: 187 (2006) - [j17]Peilin Jia, Tieliu Shi, Yudong Cai
, Yixue Li:
Demonstration of two novel methods for predicting functional siRNA efficiency. BMC Bioinform. 7: 271 (2006) - [j16]Jing Zhao
, Hong Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li:
Hierarchical modularity of nested bow-ties in metabolic networks. BMC Bioinform. 7: 386 (2006) - [j15]Sujun Li, Boshu Liu, Rong Zeng, Yudong Cai
, Yixue Li:
Predicting O-glycosylation sites in mammalian proteins by using SVMs. Comput. Biol. Chem. 30(3): 203-208 (2006) - [j14]Guoqing Zhang
, Zhi-Wei Cao, Qing-ming Luo, Yu-Dong Cai
, Yixue Li:
Operon prediction based on SVM. Comput. Biol. Chem. 30(3): 233-240 (2006) - [j13]Xing-Ming Zhao, Ji-Xiang Du, Hong-Qiang Wang, Yunping Zhu, Yixue Li:
A new technique for selecting features from protein sequences. Int. J. Pattern Recognit. Artif. Intell. 20(2): 271-283 (2006) - [j12]Chun-Hou Zheng, Yan Chen, Xiu-Xia Li, Yi-Xue Li, Yunping Zhu:
Tumor classification based on independent component analysis. Int. J. Pattern Recognit. Artif. Intell. 20(2): 297-310 (2006) - [j11]Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo, Lei Liu:
Knowledge guided analysis of microarray data. J. Biomed. Informatics 39(4): 401-411 (2006) - [j10]Qiang Lu, Pei Hao, Vasa Curcin
, Wei-Zhong He, Yuan-Yuan Li, Qing-ming Luo, Yike Guo, Yi-Xue Li:
KDE Bioscience: Platform for bioinformatics analysis workflows. J. Biomed. Informatics 39(4): 440-450 (2006) - [j9]Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li:
Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance. PLoS Comput. Biol. 2(7) (2006) - [j8]Guohui Ding, Jiuhong Kang, Qi Liu, Tieliu Shi, Gang Pei, Yixue Li:
Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families. PLoS Comput. Biol. 2(8) (2006) - [j7]Yuan-Yuan Li, Hui Yu, Zong-Ming Guo, Ting-Qing Guo, Kang Tu, Yi-Xue Li:
Correction: Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance. PLoS Comput. Biol. 2(8) (2006) - [c2]Yixue Li, Yu Xu, Gengzhong Feng, Wenqiang Dai:
On Loan-to-Value Ratios of Inventory Financing with Doubly Stochastic Poisson Default Processes. APSCC 2006: 663-666 - [c1]Zhuo Wang, Xin-Guang Zhu, Yazhu Chen, Yi-Xue Li, Lei Liu:
Comparison of Modularization Methods in Application to Different Biological Networks. VDMB 2006: 185-195 - 2005
- [j6]Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Boshu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong:
MPSS: an integrated database system for surveying a set of proteins. Bioinform. 21(9): 2142-2143 (2005) - [j5]Jingchun Sun, Jinlin Xu, Zhen Liu, Qi Liu, Aimin Zhao, Tieliu Shi, Yi-Xue Li:
Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinform. 21(16): 3409-3415 (2005) - [j4]Guang-Zheng Zhang, De-Shuang Huang, Yunping Zhu, Yi-Xue Li:
Improving protein secondary structure prediction by using the residue conformational classes. Pattern Recognit. Lett. 26(15): 2346-2352 (2005) - 2004
- [j3]Yong Deng
, Qi Liu, Yi-Xue Li:
Scoring hidden Markov models to discriminate -barrel membrane proteins. Comput. Biol. Chem. 28(3): 189-194 (2004) - 2003
- [j2]Qi Liu, Yisheng Zhu, Baohua Wang, Yi-Xue Li:
A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins. Comput. Biol. Chem. 27(1): 69-76 (2003) - [j1]Qi Liu, Yisheng Zhu, Baohua Wang, Yi-Xue Li:
Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure. Comput. Biol. Chem. 27(3): 355-361 (2003)