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Artemis G. Hatzigeorgiou
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2020 – today
- 2023
- [j36]Spyros Tastsoglou, Athanasios Alexiou, Dimitra Karagkouni, Giorgos Skoufos, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou:
DIANA-microT 2023: including predicted targets of virally encoded miRNAs. Nucleic Acids Res. 51(W1): 148-153 (2023) - [j35]Spyros Tastsoglou, Giorgos Skoufos, Marios Miliotis, Dimitra Karagkouni, Ioannis Koutsoukos, Anna Karavangeli, Filippos S. Kardaras, Artemis G. Hatzigeorgiou:
DIANA-miRPath v4.0: expanding target-based miRNA functional analysis in cell-type and tissue contexts. Nucleic Acids Res. 51(W1): 154-159 (2023) - 2022
- [j34]Dimitris Grigoriadis, Nikos Perdikopanis, Georgios K. Georgakilas, Artemis G. Hatzigeorgiou:
DeepTSS: multi-branch convolutional neural network for transcription start site identification from CAGE data. BMC Bioinform. 23-S(2): 395 (2022) - [j33]Ioannis Kavakiotis, Athanasios Alexiou, Spyros Tastsoglou, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou:
DIANA-miTED: a microRNA tissue expression database. Nucleic Acids Res. 50(D1): 1055-1061 (2022) - 2021
- [j32]Giorgos Skoufos, Filippos S. Kardaras, Athanasios Alexiou, Ioannis Kavakiotis, Anastasia Lambropoulou, Vasiliki Kotsira, Spyros Tastsoglou, Artemis G. Hatzigeorgiou:
Peryton: a manual collection of experimentally supported microbe-disease associations. Nucleic Acids Res. 49(Database-Issue): D1328-D1333 (2021) - [j31]Nikos Perdikopanis, Georgios K. Georgakilas, Dimitris Grigoriadis, Vasileios Pierros, Ioannis Kavakiotis, Panagiotis Alexiou, Artemis G. Hatzigeorgiou:
DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs. Nucleic Acids Res. 49(Database-Issue): D151-D159 (2021) - [j30]Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg:
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49(Database-Issue): D212-D220 (2021) - 2020
- [j29]Dimitra Karagkouni, Maria D. Paraskevopoulou, Spyros Tastsoglou, Giorgos Skoufos, Anna Karavangeli, Vasileios Pierros, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou:
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts. Nucleic Acids Res. 48(Database-Issue): D101-D110 (2020) - [c16]Dimitris Grigoriadis, Nikos Perdikopanis, Georgios K. Georgakilas, Artemis G. Hatzigeorgiou:
DiS-TSS: An Annotation Agnostic Algorithm for TSS Identification. IWBBIO 2020: 613-623
2010 – 2019
- 2018
- [j28]Artemis G. Hatzigeorgiou, Pantelis G. Bagos, Panayiotis V. Benos, Christoforos Nikolaou, Yves Moreau, Ioannis Kavakiotis:
ECCB 2018: The 17th European Conference on Computational Biology. Bioinform. 34(17): i595-i598 (2018) - [j27]Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. Nucleic Acids Res. 46(Database-Issue): D239-D245 (2018) - 2016
- [j26]Georgios K. Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. Nucleic Acids Res. 44(Database-Issue): 190-195 (2016) - [j25]Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios K. Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. Nucleic Acids Res. 44(Database-Issue): 231-238 (2016) - [j24]Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios K. Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. Nucleic Acids Res. 44(Webserver-Issue): W128-W134 (2016) - 2015
- [j23]Thanasis Vergoulis, Ilias Kanellos, Nikos Kostoulas, Georgios K. Georgakilas, Timos K. Sellis, Artemis G. Hatzigeorgiou, Theodore Dalamagas:
mirPub: a database for searching microRNA publications. Bioinform. 31(9): 1502-1504 (2015) - [j22]Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios K. Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions. Nucleic Acids Res. 43(Database-Issue): 153-159 (2015) - [j21]Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios K. Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-miRPath v3.0: deciphering microRNA function with experimental support. Nucleic Acids Res. 43(Webserver-Issue): W460-W466 (2015) - [c15]Ilias Kanellos, Vasiliki Vlachokyriakou, Thanasis Vergoulis, Georgios K. Georgakilas, Yannis Vassiliou, Artemis G. Hatzigeorgiou, Theodore Dalamagas:
MirPub v2: Towards Ranking and Refining miRNA Publication Search Results. TPDL 2015: 355-359 - [c14]Rodothea-Myrsini Tsoupidi, Ilias Kanellos, Thanasis Vergoulis, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou, Theodore Dalamagas:
TarMiner: automatic extraction of miRNA targets from literature. SSDBM 2015: 12:1-12:5 - 2014
- [c13]Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou, Stelios Sartzetakis, Timos K. Sellis:
MR-microT: a MapReduce-based MicroRNA target prediction method. SSDBM 2014: 47:1-47:4 - [c12]Katerina Gkirtzou, Thanasis Vergoulis, Artemis G. Hatzigeorgiou, Timos K. Sellis, Theodore Dalamagas:
Publishing Diachronic Life Science Linked Data. SWAT4LS 2014 - 2013
- [j20]Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Martin Reczko, Manolis Maragkakis, Theodore M. Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Res. 41(Database-Issue): 239-245 (2013) - [j19]Maria D. Paraskevopoulou, Georgios K. Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Res. 41(Webserver-Issue): 169-173 (2013) - 2012
- [j18]Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou:
Functional microRNA targets in protein coding sequences. Bioinform. 28(6): 771-776 (2012) - [j17]Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res. 40(Database-Issue): 222-229 (2012) - [j16]Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios K. Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res. 40(Web-Server-Issue): 498-504 (2012) - [c11]Thanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos K. Sellis:
TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction. SSDBM 2012: 628-633 - [c10]Theodore Dalamagas, Nikos Bikakis, George Papastefanatos, Yannis Stavrakas, Artemis G. Hatzigeorgiou:
Publishing life science data as linked open data: the case study of miRBase. WOD 2012: 70-77 - [i2]Theodore Dalamagas, Nikos Bikakis, George Papastefanatos, Yannis Stavrakas, Artemis G. Hatzigeorgiou:
Publishing Life Science Data as Linked Open Data: the Case Study of miRBase. CoRR abs/1205.2320 (2012) - 2011
- [j15]Manolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou:
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. Nucleic Acids Res. 39(Web-Server-Issue): 145-148 (2011) - 2010
- [j14]Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou:
miRGen 2.0: a database of microRNA genomic information and regulation. Nucleic Acids Res. 38(Database-Issue): 137-141 (2010) - [c9]Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch:
Predicting miRNA targets utilizing an Extended Profile HMM. GCB 2010: 81-91 - [c8]Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou:
FreePub: Collecting and Organizing Scientific Material Using Mindmaps. SWAT4LS 2010 - [i1]Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou:
FreePub: Collecting and Organizing Scientific Material Using Mindmaps. CoRR abs/1012.1623 (2010)
2000 – 2009
- 2009
- [j13]Giorgos L. Papadopoulos, Panagiotis Alexiou, Manolis Maragkakis, Martin Reczko, Artemis G. Hatzigeorgiou:
DIANA-mirPath: Integrating human and mouse microRNAs in pathways. Bioinform. 25(15): 1991-1993 (2009) - [j12]Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou:
Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinform. 25(23): 3049-3055 (2009) - [j11]Manolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou:
Accurate microRNA target prediction correlates with protein repression levels. BMC Bioinform. 10: 295 (2009) - [j10]Giorgos L. Papadopoulos, Martin Reczko, Victor A. Simossis, Praveen Sethupathy, Artemis G. Hatzigeorgiou:
The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res. 37(Database-Issue): 155-158 (2009) - [j9]Manolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou:
DIANA-microT web server: elucidating microRNA functions through target prediction. Nucleic Acids Res. 37(Web-Server-Issue): 273-276 (2009) - 2007
- [j8]Molly Megraw, Praveen Sethupathy, Benoit Corda, Artemis G. Hatzigeorgiou:
miRGen: a database for the study of animal microRNA genomic organization and function. Nucleic Acids Res. 35(Database-Issue): 149-155 (2007) - [j7]Axel Bernal, Koby Crammer, Artemis G. Hatzigeorgiou, Fernando Pereira:
Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction. PLoS Comput. Biol. 3(3) (2007) - 2006
- [c7]Hanno Hinsch, Artemis G. Hatzigeorgiou:
Simple Methods of Finding Short Protein Coding Sequences. BIOCOMP 2006: 17-23 - [c6]Karol Szafranski, Molly Megraw, Martin Reczko, Artemis G. Hatzigeorgiou:
Support Vector Machines for Predicting microRNA Hairpins. BIOCOMP 2006: 270-276 - 2005
- [c5]Praveen Sethupathy, Molly Megraw, M. Inmaculada Barrasa, Artemis G. Hatzigeorgiou:
Computational Identification of Regulatory Factors Involved in MicroRNA Transcription. Panhellenic Conference on Informatics 2005: 457-468 - 2002
- [j6]Artemis G. Hatzigeorgiou:
Translation initiation start prediction in human cDNAs with high accuracy. Bioinform. 18(2): 343-350 (2002) - [j5]Vladimir B. Bajic, Suisheng Tang, Hao Han, Vladimir Brusic, Artemis G. Hatzigeorgiou:
Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review. Informatica (Slovenia) 26(4) (2002) - [c4]Martin Reczko, Petko Fiziev, Eike Staub, Artemis G. Hatzigeorgiou:
Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks. WABI 2002: 60-67 - 2001
- [j4]Artemis G. Hatzigeorgiou, Petko Fiziev, Martin Reczko:
DIANA-EST: a statistical analysis. Bioinform. 17(10): 913-919 (2001) - 2000
- [j3]Christian Derst, Martin Reczko, Artemis G. Hatzigeorgiou:
Prediction of human transnational initiation sites using a multiple neural network approach. Int. J. Comput. Syst. Signals 1(2): 169-179 (2000) - [c3]Artemis G. Hatzigeorgiou:
Translation Initiation Site Prediction in Eucariotic MRNAs with High Accuracy. German Conference on Bioinformatics 2000: 35-44
1990 – 1999
- 1999
- [c2]Artemis G. Hatzigeorgiou, Martin Reczko:
Feature recognition on expressed sequence tags of human DNA. IJCNN 1999: 3490-3493 - 1996
- [j2]Philipp Bucher, James W. Fickett, Artemis G. Hatzigeorgiou:
Computational analysis of transcriptional regulatory elements: a field in flux. Comput. Appl. Biosci. 12(5): 361-362 (1996) - [c1]Niels Mache, Paul Levi, Artemis G. Hatzigeorgiou, Martin Reczko:
Detection of Eukaryotic POL II Promoters with Multi-State Time-Delay Neural Networks. German Conference on Bioinformatics 1996: 264-267 - 1995
- [j1]Martin Reczko, Artemis G. Hatzigeorgiou, Niels Mache, Andreas Zell, Sándor Suhai:
A parallel neural network simulator on the connection machine CM-5. Comput. Appl. Biosci. 11(3): 309-315 (1995)
Coauthor Index
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