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Alexander S. Rose
Person information
- affiliation: Mol* Consortium, San Diego, CA, USA
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2020 – today
- 2023
- [j21]Aliaksei Chareshneu, Adam Midlik
, Crina-Maria Ionescu, Alexander S. Rose
, Vladimír Horský
, Alessio Cantara, Radka Svobodová Vareková
, Karel Berka
, David Sehnal:
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations. Nucleic Acids Res. 51(W1): 326-330 (2023) - 2022
- [j20]Michelle Kampfrath
, René Staritzbichler
, Guillermo Pérez Hernández
, Alexander S. Rose
, Johanna K. S. Tiemann
, Gerik Scheuermann, Daniel Wiegreffe
, Peter W. Hildebrand
:
MDsrv: visual sharing and analysis of molecular dynamics simulations. Nucleic Acids Res. 50(W1): 483-489 (2022) - [i1]Michelle Kampfrath, René Staritzbichler, Guillermo Pérez Hernández, Alexander S. Rose, Johanna K. S. Tiemann, Gerik Scheuermann, Daniel Wiegreffe, Peter W. Hildebrand:
MDsrv - visual sharing and analysis of molecular dynamics simulations. CoRR abs/2203.13658 (2022) - 2021
- [j19]Karsten Schatz
, Juan José Franco-Moreno
, Marco Schäfer
, Alexander S. Rose
, Valerio Ferrario
, Jürgen Pleiss
, Pere-Pau Vázquez
, Thomas Ertl
, Michael Krone
:
Visual Analysis of Large-Scale Protein-Ligand Interaction Data. Comput. Graph. Forum 40(6): 394-408 (2021) - [j18]Stephen K. Burley
, Charmi Bhikadiya
, Chunxiao Bi, Sebastian Bittrich
, Li Chen, Gregg V. Crichlow
, Cole H. Christie, Kenneth Dalenberg, Luigi Di Costanzo, Jose M. Duarte
, Shuchismita Dutta
, Zukang Feng
, Sai Ganesan, David S. Goodsell
, Sutapa Ghosh, Rachel Kramer Green, Vladimir Guranovic
, Dmytro Guzenko, Brian P. Hudson
, Catherine L. Lawson, Yuhe Liang
, Robert Lowe
, Harry Namkoong, Ezra Peisach
, Irina Persikova
, Christopher Randle, Alexander S. Rose
, Yana Rose
, Andrej Sali, Joan Segura
, Monica Sekharan
, Chenghua Shao
, Yi-Ping Tao, Maria Voigt
, John D. Westbrook
, Jasmine Young
, Christine Zardecki
, Marina Zhuravleva:
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Res. 49(Database-Issue): D437-D451 (2021) - [j17]David Sehnal
, Sebastian Bittrich
, Mandar S. Deshpande
, Radka Svobodová Vareková
, Karel Berka
, Václav Bazgier
, Sameer Velankar
, Stephen K. Burley
, Jaroslav Koca
, Alexander S. Rose
:
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Res. 49(Webserver-Issue): 431-437 (2021) - 2020
- [j16]David Sehnal, Sebastian Bittrich
, Sameer Velankar
, Jaroslav Koca
, Radka Svobodová Vareková
, Stephen K. Burley, Alexander S. Rose
:
BinaryCIF and CIFTools - Lightweight, efficient and extensible macromolecular data management. PLoS Comput. Biol. 16(10) (2020) - [j15]Sebastian Bittrich
, Stephen K. Burley, Alexander S. Rose
:
Real-time structural motif searching in proteins using an inverted index strategy. PLoS Comput. Biol. 16(12) (2020)
2010 – 2019
- 2019
- [j14]Stephen K. Burley, Helen M. Berman
, Charmi Bhikadiya
, Chunxiao Bi, Li Chen, Luigi Di Costanzo
, Cole H. Christie, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta
, Zukang Feng, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic
, Dmytro Guzenko, Brian P. Hudson
, Tara Kalro, Yuhe Liang, Robert Lowe, Harry Namkoong, Ezra Peisach, Irina Periskova, Andreas Prlic, Christopher Randle, Alexander S. Rose
, Peter W. Rose
, Raul Sala, Monica Sekharan, Chenghua Shao
, Lihua Tan, Yi-Ping Tao, Yana Valasatava
, Maria Voigt, John D. Westbrook, Jesse Woo, Huanwang Yang, Jasmine Young
, Marina Zhuravleva, Christine Zardecki
:
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Res. 47(Database-Issue): D464-D474 (2019) - 2018
- [j13]Hai Nguyen, David A. Case, Alexander S. Rose
:
NGLview-interactive molecular graphics for Jupyter notebooks. Bioinform. 34(7): 1241-1242 (2018) - [j12]Alexander S. Rose
, Anthony R. Bradley, Yana Valasatava
, Jose M. Duarte, Andreas Prlic, Peter W. Rose
:
NGL viewer: web-based molecular graphics for large complexes. Bioinform. 34(21): 3755-3758 (2018) - [j11]Johanna K. S. Tiemann
, Alexander S. Rose
, Jochen Ismer, Mitra D. Darvish, Tarek Hilal
, Christian M. T. Spahn, Peter W. Hildebrand:
FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps. Nucleic Acids Res. 46(Webserver-Issue): W310-W314 (2018) - [c3]David Sehnal, Alexander S. Rose
, Jaroslav Koca, Stephen K. Burley, Sameer Velankar:
Mol*: Towards a Common Library and Tools for Web Molecular Graphics. MolVa@EuroVis 2018: 29-33 - 2017
- [j10]José Jiménez
, Stefan Doerr
, Gerard Martínez-Rosell, Alexander S. Rose
, Gianni De Fabritiis:
DeepSite: protein-binding site predictor using 3D-convolutional neural networks. Bioinform. 33(19): 3036-3042 (2017) - [j9]Jochen Ismer, Alexander S. Rose, Johanna K. S. Tiemann
, Peter W. Hildebrand:
A fragment based method for modeling of protein segments into cryo-EM density maps. BMC Bioinform. 18(1): 475 (2017) - [j8]Peter W. Rose
, Andreas Prlic
, Ali Altunkaya, Chunxiao Bi, Anthony R. Bradley, Cole H. Christie, Luigi Di Costanzo
, Jose M. Duarte
, Shuchismita Dutta
, Zukang Feng, Rachel Kramer Green, David S. Goodsell, Brian P. Hudson
, Tara Kalro, Robert Lowe, Ezra Peisach
, Christopher Randle, Alexander S. Rose, Chenghua Shao
, Yi-Ping Tao, Yana Valasatava
, Maria Voigt, John D. Westbrook, Jesse Woo, Huanwang Yang, Jasmine Young
, Christine Zardecki
, Helen M. Berman
, Stephen K. Burley
:
The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Res. 45(Database-Issue): D271-D281 (2017) - [j7]Anthony R. Bradley
, Alexander S. Rose
, Antonín Pavelka, Yana Valasatava
, Jose M. Duarte
, Andreas Prlic
, Peter W. Rose
:
MMTF - An efficient file format for the transmission, visualization, and analysis of macromolecular structures. PLoS Comput. Biol. 13(6) (2017) - [c2]Naif Alharbi, Mohammad Alharbi, Xavier Martinez, Michael Krone, Alexander S. Rose
, Marc Baaden
, Robert S. Laramee, Matthieu Chavent:
Molecular Visualization of Computational Biology Data: A Survey of Surveys. EuroVis (Short Papers) 2017: 133-137 - 2016
- [j6]Jochen Ismer, Alexander S. Rose
, Johanna K. S. Tiemann
, Andrean Goede
, Robert Preissner
, Peter W. Hildebrand:
SL2: an interactive webtool for modeling of missing segments in proteins. Nucleic Acids Res. 44(Webserver-Issue): W390-W394 (2016) - [c1]Alexander S. Rose
, Anthony R. Bradley, Yana Valasatava
, Jose M. Duarte, Andreas Prlic
, Peter W. Rose
:
Web-based molecular graphics for large complexes. Web3D 2016: 185-186 - 2015
- [j5]Alexander S. Rose
, Peter W. Hildebrand:
NGL Viewer: a web application for molecular visualization. Nucleic Acids Res. 43(Webserver-Issue): W576-W579 (2015) - 2014
- [j4]Alexander S. Rose
, Dominic Theune, Andrean Goede
, Peter Werner Hildebrand:
MP: PD - a data base of internal packing densities, internal packing defects and internal waters of helical membrane proteins. Nucleic Acids Res. 42(Database-Issue): 347-351 (2014) - 2013
- [j3]Jochen Ismer, Alexander S. Rose
, Johanna K. S. Tiemann
, Andrean Goede
, Kristian Rother, Peter Werner Hildebrand:
Voronoia4RNA - a database of atomic packing densities of RNA structures and their complexes. Nucleic Acids Res. 41(Database-Issue): 280-284 (2013) - 2010
- [j2]Alexander S. Rose
, Andrean Goede
, Peter Werner Hildebrand:
MPlot - a server to analyze and visualize tertiary structure contacts and geometrical features of helical membrane proteins. Nucleic Acids Res. 38(Web-Server-Issue): 602-608 (2010)
2000 – 2009
- 2009
- [j1]Alexander S. Rose
, Stephan Lorenzen
, Andrean Goede
, Björn A. Grüning
, Peter Werner Hildebrand:
RHYTHM - a server to predict the orientation of transmembrane helices in channels and membrane-coils. Nucleic Acids Res. 37(Web-Server-Issue): 575-580 (2009)
Coauthor Index
aka: Peter W. Hildebrand
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last updated on 2024-07-08 22:24 CEST by the dblp team
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