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Yuri I. Wolf
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2020 – today
- 2024
- [c4]Sagi Snir, Yuri I. Wolf, Shelly Brezner, Eugene V. Koonin, Mike A. Steel:
On the Distribution of Synteny Blocks Under a Neutral Model of Genome Dynamics. RECOMB-CG 2024: 173-188 - 2021
- [j18]Michael Y. Galperin, Yuri I. Wolf, Kira S. Makarova, Roberto Vera Alvarez, David Landsman, Eugene V. Koonin:
COG database update: focus on microbial diversity, model organisms, and widespread pathogens. Nucleic Acids Res. 49(Database-Issue): D274-D281 (2021) - [i2]Vitaly Vanchurin, Yuri I. Wolf, Mikhail I. Katsnelson, Eugene V. Koonin:
Towards a Theory of Evolution as Multilevel Learning. CoRR abs/2110.14602 (2021) - [i1]Vitaly Vanchurin, Yuri I. Wolf, Eugene V. Koonin, Mikhail I. Katsnelson:
Thermodynamics of Evolution and the Origin of Life. CoRR abs/2110.15066 (2021)
2010 – 2019
- 2019
- [j17]Michael Y. Galperin, David M. Kristensen, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin:
Microbial genome analysis: the COG approach. Briefings Bioinform. 20(4): 1063-1070 (2019) - 2017
- [j16]David M. Kristensen, Yuri I. Wolf, Eugene V. Koonin:
ATGC database and ATGC-COGs: an updated resource for micro- and macro-evolutionary studies of prokaryotic genomes and protein family annotation. Nucleic Acids Res. 45(Database-Issue): D210-D218 (2017) - 2015
- [j15]Michael Y. Galperin, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin:
Expanded microbial genome coverage and improved protein family annotation in the COG database. Nucleic Acids Res. 43(Database-Issue): 261-269 (2015) - 2013
- [j14]David Managadze, Alexander E. Lobkovsky, Yuri I. Wolf, Svetlana A. Shabalina, Igor B. Rogozin, Eugene V. Koonin:
The Vast, Conserved Mammalian lincRNome. PLoS Comput. Biol. 9(2) (2013) - 2012
- [j13]Sagi Snir, Yuri I. Wolf, Eugene V. Koonin:
Universal Pacemaker of Genome Evolution. PLoS Comput. Biol. 8(11) (2012) - 2011
- [j12]David M. Kristensen, Yuri I. Wolf, Arcady R. Mushegian, Eugene V. Koonin:
Computational methods for Gene Orthology inference. Briefings Bioinform. 12(5): 379-391 (2011) - [j11]Eugene V. Koonin, Pere Puigbò, Yuri I. Wolf:
Comparison of Phylogenetic Trees and Search for a Central Trend in the "Forest of Life". J. Comput. Biol. 18(7): 917-924 (2011) - [j10]Alexander E. Lobkovsky, Yuri I. Wolf, Eugene V. Koonin:
Predictability of Evolutionary Trajectories in Fitness Landscapes. PLoS Comput. Biol. 7(12) (2011) - 2010
- [j9]Liran Carmel, Yuri I. Wolf, Igor B. Rogozin, Eugene V. Koonin:
EREM: Parameter Estimation and Ancestral Reconstruction by Expectation-Maximization Algorithm for a Probabilistic Model of Genomic Binary Characters Evolution. Adv. Bioinformatics 2010: 167408:1-167408:4 (2010) - [j8]David M. Kristensen, Lavanya Kannan, Michael K. Coleman, Yuri I. Wolf, Alexander Sorokin, Eugene V. Koonin, Arcady R. Mushegian:
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches. Bioinform. 26(12): 1481-1487 (2010)
2000 – 2009
- 2009
- [j7]Pavel S. Novichkov, Igor Ratnere, Yuri I. Wolf, Eugene V. Koonin, Inna Dubchak:
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res. 37(Database-Issue): 448-454 (2009) - 2005
- [c3]Liran Carmel, Igor B. Rogozin, Yuri I. Wolf, Eugene V. Koonin:
An Expectation-Maximization Algorithm for Analysis of Evolution of Exon-Intron Structure of Eukaryotic Genes. Comparative Genomics 2005: 35-46 - 2004
- [j6]Igor B. Rogozin, Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin:
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes. Briefings Bioinform. 5(2): 131-149 (2004) - 2003
- [j5]Georgy P. Karev, Yuri I. Wolf, Eugene V. Koonin:
Simple stochastic birth andz death models of genome evolution: was there enough time for us to evolve? Bioinform. 19(15): 1889-1900 (2003) - [j4]Roman L. Tatusov, Natalie D. Fedorova, John D. Jackson, Aviva R. Jacobs, Boris Kiryutin, Eugene V. Koonin, Dmitri M. Krylov, Raja Mazumder, Sergei L. Mekhedov, Anastasia N. Nikolskaya, B. Sridhar Rao, Sergei Smirnov, Alexander V. Sverdlov, Sona Vasudevan, Yuri I. Wolf, Jodie J. Yin, Darren A. Natale:
The COG database: an updated version includes eukaryotes. BMC Bioinform. 4: 41 (2003) - 2000
- [j3]Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller:
Winnowing Sequences from a Database Search. J. Comput. Biol. 7(1-2): 293-302 (2000)
1990 – 1999
- 1999
- [j2]Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul:
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinform. 15(12): 1000-1011 (1999) - [c2]Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller:
Winnowing sequences from a database search. RECOMB 1999: 50-58 - 1996
- [c1]Igor A. Seledtsov, Yuri I. Wolf, Dmitry Korshunov, Kira S. Makarova:
Sequence Similarity Significance: Computer Simulations and Analytically obtained Bounds. German Conference on Bioinformatics 1996: 305-307 - 1992
- [j1]Kira S. Makarova, A. V. Mazin, Yuri I. Wolf, V. V. Soloviev:
DIROM: an experimental design interactive system for directed mutagenesis and nucleic acids engineering. Comput. Appl. Biosci. 8(5): 425-431 (1992)
Coauthor Index
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