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ORCIDJosé María Carazo
Person information
- affiliation: National Center for Biotechnology, Spain
- affiliation (former): Autonomous University of Madrid, Spain
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2020 – today
- 2024
[c36]Oier Lauzirika Zarrabeitia, E. Ramírez-Aportela, José María Carazo, Carlos Oscar Sánchez Sorzano:
Fast Global Image Alignment Algorithm for CryoEM through Vector Compression. ISBI 2024: 1-4- 2023
- [j61]Romain David
, Audrey S. Richard, Claire Connellan, Katharina B. Lauer, Maria Luisa Chiusano, Carole A. Goble, Martin Houde, Isabel Kemmer, Antje Keppler, Philippe Lieutaud, Christian Ohmann, Maria Panagiotopoulou, Sara Raza Khan, Arina Rybina, Stian Soiland-Reyes, Charlotte Wit, Rudolf Wittner, Rafael Andrade Buono, Sarah Arnaud Marsh, Pauline Audergon, Dylan Bonfils, José María Carazo, Remi Charrel, Frederik Coppens, Wolfgang Fecke, Claudia Filippone, Eva G. Alvarez, Sheraz Gul, Henning Hermjakob, Katja Herzog, Petr Holub, Lukasz Kozera, Allyson L. Lister, José López-Coronado, Bénédicte Madon, Kurt Majcen, William Martin, Wolfgang Müller, Elli Papadopoulou, Christine M. A. Prat, Paolo Romano, Susanna-Assunta Sansone, Gary Saunders, Niklas Blomberg, Jonathan Ewbank:
Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness. Data Sci. J. 22: 35 (2023) - 2022
- [j60]Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - 2021
- [j59]José Ramón Macías, Rubén Sánchez García, Pablo Conesa, Erney Ramírez-Aportela, Marta Martínez, Carlos Wert-Carvajal, Alberto M. Parra-Perez, Joan Segura Mora, Sam Horrell, Andrea Thorn, Carlos Oscar Sánchez Sorzano, José María Carazo:
3DBionotes COVID-19 edition. Bioinform. 37(22): 4258-4260 (2021) - 2020
- [j58]Erney Ramírez-Aportela, Jose Luis Vilas, Alisa Glukhova, Roberto Melero, Pablo Conesa, Marta Martínez, David Maluenda, Javier Mota, Amaya Jiménez, Javier Vargas, Roberto Marabini, Patrick M. Sexton, José María Carazo, Carlos Oscar Sánchez Sorzano:
Automatic local resolution-based sharpening of cryo-EM maps. Bioinform. 36(3): 765-772 (2020) - [j57]Marta Martínez, A. Jiménez-Moreno, David Maluenda, Erney Ramírez-Aportela, Roberto Melero, Ana Cuervo, Pablo Conesa, Laura del Cano, Y. C. Fonseca, Rubén Sánchez García, David Strelák, J. J. Conesa, E. Fernández-Giménez, F. de Isidro, Carlos Oscar Sánchez Sorzano, José María Carazo, Roberto Marabini:
Integration of Cryo-EM Model Building Software in Scipion. J. Chem. Inf. Model. 60(5): 2533-2540 (2020)
2010 – 2019
- 2019
- [j56]Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura:
BIPSPI: a method for the prediction of partner-specific protein-protein interfaces. Bioinform. 35(3): 470-477 (2019) - [j55]Amaya Jiménez, Slavica Jonic, Tomás Majtner, Joaquín Otón, Jose Luis Vilas, David Maluenda, Javier Mota, Erney Ramírez-Aportela, Marta Martínez, Yaiza Rancel, Joan Segura, Rubén Sánchez García, Roberto Melero, Laura del Cano, Pablo Conesa, Lars Skjaerven, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano:
Validation of electron microscopy initial models via small angle X-ray scattering curves. Bioinform. 35(14): 2427-2433 (2019) - [j54]Joan Segura, Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo:
3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations. Bioinform. 35(18): 3512-3513 (2019) - [j53]David Strelák, Carlos Oscar Sánchez Sorzano, José María Carazo, Jiri Filipovic:
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. Int. J. High Perform. Comput. Appl. 33(5) (2019) - 2017
- [j52]Joan Segura, Rubén Sánchez García, Marta Martínez, Jesús Cuenca Alba, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, José María Carazo:
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures. Bioinform. 33(22): 3655-3657 (2017) - [i1]Carlos Oscar Sánchez Sorzano, José María Carazo:
Challenges ahead Electron Microscopy for Structural Biology from the Image Processing point of view. CoRR abs/1701.00326 (2017) - 2015
- [j51]Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo:
Using neighborhood cohesiveness to infer interactions between protein domains. Bioinform. 31(15): 2545-2552 (2015) - 2014
- [j50]Javier Vargas, Ana-Lucia Álvarez-Cabrera, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano:
Efficient initial volume determination from electron microscopy images of single particles. Bioinform. 30(20): 2891-2898 (2014) - [c35]Carlos Oscar Sánchez Sorzano, Javier Vargas, Joaquín Otón, Vahid Abrishami, José Miguel de la Rosa-Trevín, S. del Riego, A. Fernandez-Alderete, C. Martinez-Rey, Roberto Marabini, José María Carazo:
An image processing approach to the simulation of electron microscopy volumes of atomic structures. ICIP 2014: 2095-2099 - [c34]Carlos Oscar Sánchez Sorzano, Javier Vargas, José Miguel de la Rosa-Trevín, Airen Zaldívar-Peraza, Joaquín Otón, Vahid Abrishami, Ignacio Foche, Roberto Marabini, Gabriel Caffarena, José María Carazo:
Outlier detection for single particle analysis in Electron Microscopy. IWBBIO 2014: 950-959 - 2013
- [j49]Vahid Abrishami, Airen Zaldívar-Peraza, José Miguel de la Rosa-Trevín, Javier Vargas, Joaquín Otón, Roberto Marabini, Yoel Shkolnisky, José María Carazo, Carlos Oscar Sánchez Sorzano:
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs. Bioinform. 29(19): 2460-2468 (2013) - 2012
- [j48]Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo:
Integrating human and murine anatomical gene expression data for improved comparisons. Bioinform. 28(3): 397-402 (2012) - [c33]Carlos Oscar Sánchez Sorzano, Joaquín Otón, Jesús Cuenca Alba, Airen Zaldívar-Perez, Gabriel Caffarena, Javier Sanchez-Jimenez, Cédric Messaoudi, Sergio Marco, Roberto Marabini, José María Carazo:
Image processing for Cellular tomography using soft X-rays. ISBI 2012: 1322 - 2010
- [j47]Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano:
Moara: a Java library for extracting and normalizing gene and protein mentions. BMC Bioinform. 11: 157 (2010) - [j46]Miguel Vázquez, Rubén Nogales-Cadenas, Javier Arroyo, Pedro Botías, Raul García, José María Carazo, Francisco Tirado, Alberto D. Pascual-Montano, Pedro Carmona-Saez:
MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures. Nucleic Acids Res. 38(Web-Server-Issue): 228-232 (2010)
2000 – 2009
- 2009
- [j45]Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo:
aGEM: an integrative system for analyzing spatial-temporal gene-expression information. Bioinform. 25(19): 2566-2572 (2009) - [j44]Carlos Oscar Sánchez Sorzano, Cédric Messaoudi, Matthias Eibauer, Jose-Roman Bilbao-Castro, Reiner Hegerl, S. Nickell, Sergio Marco, José María Carazo:
Marker-free image registration of electron tomography tilt-series. BMC Bioinform. 10 (2009) - [j43]Rubén Nogales-Cadenas, Federico Abascal, Javier Díez-Pérez, José María Carazo, Alberto D. Pascual-Montano:
CentrosomeDB: a human centrosomal proteins database. Nucleic Acids Res. 37(Database-Issue): 175-180 (2009) - [j42]Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano:
SENT: semantic features in text. Nucleic Acids Res. 37(Web-Server-Issue): 153-159 (2009) - [j41]Rubén Nogales-Cadenas, Pedro Carmona-Saez, Miguel Vázquez, Cesar Vicente, Xiaoyuan Yang, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano:
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. Nucleic Acids Res. 37(Web-Server-Issue): 317-322 (2009) - [c32]Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano:
Extraction of biomedical events using case-based reasoning. BioNLP@HLT-NAACL (Shared Task) 2009: 68-76 - 2008
- [j40]Federico Abascal, Pedro Carmona-Saez, José María Carazo, Alberto D. Pascual-Montano:
ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. Bioinform. 24(9): 1208-1209 (2008) - [j39]Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano:
Assessment of protein set coherence using functional annotations. BMC Bioinform. 9 (2008) - [j38]Pablo Cortés, Jesús Muñuzuri, Luis Onieva, José María Carazo:
Design and analysis of an object-oriented discrete-event simulation engine for ATM telecommunication networks. Int. J. Simul. Process. Model. 4(1): 43-53 (2008) - [j37]Carlos Oscar Sánchez Sorzano, Javier A. Velázquez-Muriel, Roberto Marabini, Gabor T. Herman, José María Carazo:
Volumetric restrictions in single particle 3DEM reconstruction. Pattern Recognit. 41(2): 616-626 (2008) - [c31]Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano:
CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem. BioNLP 2008: 108-109 - [c30]Laura Fernandez-de-Manuel, María J. Ledesma-Carbayo, Julian Atienza-Herrero, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos:
Flexible image registration for the identification of best fitted protein models in 3D-EM maps. ISBI 2008: 983-986 - [c29]Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano:
Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library. BioLINK@ISMB/ECCB 2008: 71-80 - 2007
- [j36]José-Jesús Fernández, Inmaculada García, José María Carazo, Roberto Marabini:
Electron tomography of complex biological specimens on the Grid. Future Gener. Comput. Syst. 23(3): 435-446 (2007) - [j35]Jose-Roman Bilbao-Castro, A. Merino, Inmaculada García, José María Carazo, José-Jesús Fernández:
Parameter optimization in 3D reconstruction on a large scale grid. Parallel Comput. 33(4-5): 250-263 (2007) - 2006
- [j34]Carlos Oscar Sánchez Sorzano, Roberto Marabini, Alberto D. Pascual-Montano, Sjors H. W. Scheres, José María Carazo:
Optimization problems in electron microscopy of single particles. Ann. Oper. Res. 148(1): 133-165 (2006) - [j33]Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano:
Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinform. 7: 41 (2006) - [j32]Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano:
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7: 54 (2006) - [j31]Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano:
Biclustering of gene expression data by non-smooth non-negative matrix factorization. BMC Bioinform. 7: 78 (2006) - [j30]Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano:
A literature-based similarity metric for biological processes. BMC Bioinform. 7: 363 (2006) - [j29]Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui:
bioNMF: a versatile tool for non-negative matrix factorization in biology. BMC Bioinform. 7: 366 (2006) - [j28]Alberto D. Pascual-Montano, José María Carazo, Kieko Kochi, Dietrich Lehmann, Roberto D. Pascual-Marqui:
Nonsmooth Nonnegative Matrix Factorization (nsNMF). IEEE Trans. Pattern Anal. Mach. Intell. 28(3): 403-415 (2006) - [j27]José-Jesús Fernández, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo:
Image processing and 3-D reconstruction in electron microscopy. IEEE Signal Process. Mag. 23(3): 84-94 (2006) - [c28]Ignacio Arganda-Carreras, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic:
Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. CVAMIA 2006: 85-95 - [c27]Bartosz Telenczuk, María J. Ledesma-Carbayo, Javier A. Velázquez-Muriel, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos:
Molecular image registration using mutual information and differential evolution optimization. ISBI 2006: 844-847 - 2005
- [j26]Andrés Rodríguez Moreno, José María Carazo, Oswaldo Trelles-Salazar:
Mining association rules from biological databases. J. Assoc. Inf. Sci. Technol. 56(5): 493-504 (2005) - [j25]Carlos Oscar Sánchez Sorzano, Roberto Marabini, Gabor T. Herman, José María Carazo:
Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction. Pattern Recognit. 38(12): 2587-2601 (2005) - [c26]Sjors H. W. Scheres, A. J. Merino, Carlos Oscar Sánchez Sorzano, José María Carazo:
Grid Computing in 3D-EM Image Processing Using Xmipp. CBMS 2005: 561-563 - [c25]Alberto D. Pascual-Montano, Francisco Tirado, Pedro Carmona-Saez, José María Carazo, Roberto D. Pascual-Marqui:
Two-way clustering of gene expression profiles by sparse matrix factorization. CSB Workshops 2005: 103-104 - [c24]Javier A. Velázquez-Muriel, José María Carazo:
Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM. CSB Workshops 2005: 209-210 - [c23]Sjors H. W. Scheres, Mikel Valle, José María Carazo:
Fast maximum-likelihood refinement of electron microscopy images. ECCB/JBI 2005: 244 - 2004
- [j24]Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, José María Carazo, Amarnath Gupta:
Designing and executing scientific workflows with a programmable integrator. Bioinform. 20(13): 2092-2100 (2004) - [j23]José-Jesús Fernández, José María Carazo, Inmaculada García:
Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing. J. Parallel Distributed Comput. 64(2): 285-300 (2004) - [j22]José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García:
Biological Structure Determination by EM is Well Suited to Grid Computing. New Gener. Comput. 22(2): 187-188 (2004) - [j21]José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García:
On the Suitability of Biological Structure Determination by Electron Microscopy to Grid Computing. New Gener. Comput. 23(1): 101-112 (2004) - [j20]Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García, José-Jesús Fernández:
The Potential Of Grid Computing In Three-Dimensional Electron Microscopy. Parallel Process. Lett. 14(2): 151-162 (2004) - [j19]Roberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman:
3-D reconstruction of 2-D crystals in real space. IEEE Trans. Image Process. 13(4): 549-561 (2004) - [c22]Jose-Roman Bilbao-Castro, José María Carazo, José-Jesús Fernández, Inmaculada García:
Parallelization and Comparison of 3D Iterative Reconstruction Algorithms. PDP 2004: 96-102 - 2003
- [j18]Jorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto D. Pascual-Montano:
Engene: the processing and exploratory analysis of gene expression data. Bioinform. 19(5): 657-658 (2003) - [c21]Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta:
A Semantic Mediation Approach for Problems in Computational Molecular Biology. CSB 2003: 386-387 - [c20]José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García:
Grid Computing in Structure Determination of Biological Specimens by Electron Microscope Tomography. European Across Grids Conference 2003: 171-181 - [c19]Jose-Roman Bilbao-Castro, José María Carazo, Inmaculada García, José-Jesús Fernández:
Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy. ICIP (1) 2003: 565-568 - 2002
- [j17]Carlos Oscar Sánchez Sorzano, José María Carazo, Oswaldo Trelles:
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE). Softw. Pract. Exp. 32(9): 873-887 (2002) - [c18]Pedro A. de Alarcón, Alberto D. Pascual-Montano, José María Carazo:
Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases. CIVR 2002: 225-234 - [c17]Pedro A. de Alarcón, Alberto D. Pascual-Montano, Amarnath Gupta, José María Carazo:
Modeling Shape and Topology of 3D Images of Biological Specimens. ICPR (1) 2002: 79-82 - [c16]Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo:
Volumetric constraints in 3D tomography applied to electron microscopy. ISBI 2002: 641-644 - [c15]Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo, José-Jesús Fernández, Samuel Matej:
3D reconstruction of 2D crystals from projections in real space. ISBI 2002: 689-692 - [c14]José-Jesús Fernández, Albert F. Lawrence, Javier Roca Piera, Inmaculada García, Mark H. Ellisman, José María Carazo:
High Performance Computing in Electron Microscope Tomography of Complex Biological Structures. VECPAR 2002: 166-180 - 2001
- [j16]Roberto D. Pascual-Marqui, Alberto D. Pascual-Montano, Kieko Kochi, José María Carazo:
Smoothly distributed fuzzy c-means: a new self-organizing map. Pattern Recognit. 34(12): 2395-2402 (2001) - 2000
- [j15]Gabor T. Herman, Roberto Marabini, José María Carazo, Edgar Garduño, Robert M. Lewitt, Samuel Matej:
Image processing approaches to biological three-dimensional electron microscopy. Int. J. Imaging Syst. Technol. 11(1): 12-29 (2000) - [c13]Alberto Pascual, Montserrat Barcéna, Juan Julián Merelo Guervós, José María Carazo:
Self-Organizing Networks for Mapping and Clustering Biological Macromolecules Images. ANNIMAB 2000: 283-288
1990 – 1999
- 1999
- [j14]José María Carazo, Ernst H. K. Stelzer, A. Engel, I. Fita, C. Henn, J. Machtynger, P. McNeil, David M. Shotton, Monica Chagoyen, Pedro A. de Alarcón, R. Fritsch, J. B. Heymann, Susana G. Kalko, J. J. Pittet, Patricia Rodriguez-Tomé, Thomas Boudier:
Organising multi-dimensional biological image information: the BioImage Database. Nucleic Acids Res. 27(1): 280-283 (1999) - [c12]Alberto Pascual, Montserrat Barcéna, Juan Julián Merelo Guervós, José María Carazo:
Application of the Fuzzy Kohonen Clustering Network to Biological Macromolecules Images Classification. IWANN (2) 1999: 331-340 - [c11]Juan Julián Merelo Guervós, Víctor Manuel Rivas Santos, Gustavo Romero, Pedro Ángel Castillo Valdivieso, Alberto Pascual, José María Carazo:
Improved Automatic Classification of Biological Particles from Electron-Microscopy Images Using Genetic Neural Nets. IWANN (2) 1999: 373-382 - [c10]José María Carazo, Ramon Doallo, J. M. Eiroa, Jose Rodrigo Sanjurjo:
Bayesian image restoration: Parallel implementation on a SGI origin multiprocessor. PARCO 1999: 85-94 - 1998
- [j13]Huaichun Wang, Joaquín Dopazo, José María Carazo:
Self-organizing tree growing network for classifying amino acids. Bioinform. 14(4): 376-377 (1998) - [j12]Oswaldo Trelles, Miguel A. Andrade, Alfonso Valencia, Emilio L. Zapata, José María Carazo:
Computational space reduction and parallelization of a new clustering approach for large groups of sequences. Bioinform. 14(5): 439-451 (1998) - [j11]Oswaldo Trelles, C. Ceron, Huaichun Wang, Joaquín Dopazo, José María Carazo:
New phylogenetic venues opened by a novel implementation of the DNAml algorithm. Bioinform. 14(6): 544-545 (1998) - [j10]Juan Julián Merelo Guervós, Alberto Prieto, Federico Morán, Roberto Marabini, José María Carazo:
Automatic Classification of Biological Particles from Electron-microscopy Images Using Conventional and Genetic-algorithm Optimized Learning Vector Quantization. Neural Process. Lett. 8(1): 55-65 (1998) - [j9]C. Ceron, Joaquín Dopazo, Emilio L. Zapata, José María Carazo, Oswaldo Trelles:
Parallel Implementation of DNAml Program on Message-Passing Architectures. Parallel Comput. 24(5-6): 701-716 (1998) - [c9]S. Lindek, R. Fritsch, Ernst H. K. Stelzer, José María Carazo, A. Engel, I. Fita, C. Henn, P. McNeil, David M. Shotton, J. Machtynger:
Biolmage, the database of biological microscopy data. German Conference on Bioinformatics 1998 - [c8]Andrés Rodríguez Moreno, Luis Gerardo de la Fraga, Emilio L. Zapata, José María Carazo, Oswaldo Trelles:
Biological sequence analysis on distributed-shared memory multiprocessors. PDP 1998: 20-26 - 1997
- [c7]Joaquín Dopazo, Huaichun Wang, José María Carazo:
A New Type of Unsupervised Growing Neural Network for Biological Sequence Classification That Adopts the Topology of a Phylogenetic Tree. IWANN 1997: 932-941 - [c6]Juan Julián Merelo Guervós, Alberto Prieto, Federico Morán, Roberto Marabini, José María Carazo:
A GA-optimized Neural Network for Classification of Biological Particles from Electron-Microscopy Images. IWANN 1997: 1174-1182 - 1996
- [j8]Roberto Marabini, José María Carazo:
On a new computationally fast image invariant based on bispectral projections. Pattern Recognit. Lett. 17(9): 959-967 (1996) - [j7]Inmaculada García, J. Roca, Jose Rodrigo Sanjurjo, José María Carazo, Emilio L. Zapata:
Implementation and experimental evaluation of the constrained ART algorithm on a multicomputer system. Signal Process. 51(1): 69-76 (1996) - 1995
- [j6]Oswaldo Trelles-Salazar, Emilio L. Zapata, Joaquín Dopazo, A. F. Coulson, José María Carazo:
An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data. Comput. Appl. Biosci. 11(3): 301-308 (1995) - 1994
- [j5]Oswaldo Trelles-Salazar, Emilio L. Zapata, José María Carazo:
On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures. Comput. Appl. Biosci. 10(5): 509-511 (1994) - [j4]Roberto Marabini, José María Carazo:
Practical issues on invariant image averaging using the Bispectrum. Signal Process. 40(2-3): 119-128 (1994) - [c5]Oswaldo Trelles-Salazar, Emilio L. Zapata, José María Carazo:
Mapping Strategies for Sequential Sequence Comparison Algorithms on LAN-Based Message Passing Architectures. HPCN 1994: 197-202 - [c4]Manuel Ujaldon, Rafael Asenjo, Emilio L. Zapata, José Carlos Cabaleiro, José María Carazo:
3d Reconstruction Of Macromolecules On Multiprocessors. PDP 1994: 260-267 - [c3]Roberto Marabini, C. Vaquerizo, José-Jesús Fernández, José María Carazo, M. Ladjadj, O. Odesanya, J. Frank:
Prototype for a new distributed database of volume data obtained by 3D imaging. VBC 1994 - 1993
- [c2]José Carlos Cabaleiro, José María Carazo, Emilio L. Zapata:
Parallel algorithm for principal components based on Hotelling's iterative procedure. PDP 1993: 144-149 - 1992
- [j3]Emilio L. Zapata, Ignacio Benavides, Francisco F. Rivera, Javier D. Bruguera, Tomás F. Pena, José María Carazo:
Image reconstruction on hypercube computers: Application to electron microscopy. Signal Process. 27(1): 51-64 (1992) - 1990
- [j2]Francisco F. Rivera, Emilio L. Zapata, José María Carazo:
Cluster validity based on the hard tendency of the fuzzy classification. Pattern Recognit. Lett. 11(1): 7-12 (1990) - [j1]Emilio L. Zapata, José Ignacio Benavides Benítez, Oscar G. Plata, Francisco F. Rivera, José María Carazo:
Image template matching on hypercube SIMD computers. Signal Process. 21(1): 49-60 (1990)
1980 – 1989
- 1988
- [c1]José María Carazo:
3-D electron microscopy and incomplete angular coverage: a restoration scheme based on projections onto convex sets. ICASSP 1988: 886-889