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ORCIDNucleic Acids Research, Volume 34
Volume 34, Database-Issue, January 1 2006
- Alex Bateman:
EDITORIAL. 1
- Michael Y. Galperin
:
The Molecular Biology Database Collection: 2006 update. 3-5 - Kousaku Okubo, Hideaki Sugawara, Takashi Gojobori, Yoshio Tateno:
DDBJ in preparation for overview of research activities behind data submissions. 6-9 - Guy Cochrane, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Wendy Baker, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Paul Browne, Alexandra van den Broek, Matias Castro, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, John Gamble, Carola Kanz, Tamara Kulikova, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Michelle McHale, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Siamak Sobhany, Peter Stoehr, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler:
EMBL Nucleotide Sequence Database: developments in 2005. 10-15 - Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler:
GenBank. 16-20 - Namshin Kim, Pora Kim, Seungyoon Nam, Seokmin Shin, Sanghyuk Lee:
ChimerDB - a knowledgebase for fusion sequences. 21-24 - K. T. Nishant, Chetan Kumar, M. R. S. Rao:
HUMHOT: a database of human meiotic recombination hot spots. 25-28 - Rivka L. Glaser, Joshua P. Ramsay, Ian M. Morison:
The imprinted gene and parent-of-origin effect database now includes parental origin of de novo mutations. 29-31 - Patricia Siguier, Jocelyne Pérochon, L. Lestrade, J. Mahillon, Michael Chandler:
ISfinder: the reference centre for bacterial insertion sequences. 32-36 - Grant H. Jacobs, Peter A. Stockwell, Warren Tate, Chris M. Brown:
Transterm - extended search facilities and improved integration with other databases. 37-40 - Jeremy D. Glasner, Michael Rusch, Paul Liss, Guy Plunkett III, Eric L. Cabot, Aaron E. Darling, Bradley D. Anderson, Paul Infield-Harm, Michael C. Gilson, Nicole T. Perna:
ASAP: a resource for annotating, curating, comparing, and disseminating genomic data. 41-45 - Stefan Stamm, Jean-Jack M. Riethoven, Vincent Le Texier, Chellappa Gopalakrishnan, Vasudev Kumanduri, Yesheng Tang, Nuno L. Barbosa-Morais, Thangavel Alphonse Thanaraj:
ASD: a bioinformatics resource on alternative splicing. 46-55 - Dirk Holste, George Huo, Vivian Tung, Christopher B. Burge:
HOLLYWOOD: a comparative relational database of alternative splicing. 56-62 - Enrique Blanco, Domènec Farré, M. Mar Albà, Xavier Messeguer, Roderic Guigó:
ABS: a database of Annotated regulatory Binding Sites from orthologous promoters. 63-67 - Gordon Robertson, Misha Bilenky, Keven Lin, An He, W. Yuen, M. Dagpinar, Richard Varhol, Kevin Teague, Obi L. Griffith, X. Zhang, Y. Pan, Maik Hassel, Monica C. Sleumer, W. Pan, Erin Pleasance, M. Chuang, H. Hao, Yvonne Y. Li, Neil Robertson, C. Fjell, Bernard Li, Stephen B. Montgomery, Tamara Astakhova, Jianjun Zhou, Jörg Sander, Asim S. Siddiqui, Steven J. M. Jones:
cisRED: a database system for genome-scale computational discovery of regulatory elements. 68-73 - Sarah K. Kummerfeld, Sarah A. Teichmann:
DBD: a transcription factor prediction database. 74-81 - Christoph D. Schmid, Rouaïda Périer, Viviane Praz, Philipp Bucher:
EPD in its twentieth year: towards complete promoter coverage of selected model organisms. 82-85 - Riu Yamashita, Yutaka Suzuki, Hiroyuki Wakaguri, Katsuki Tsuritani, Kenta Nakai, Sumio Sugano:
DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. 86-89 - Vidhya Jagannathan, Emmanuelle Roulet, Mauro Delorenzi, Philipp Bucher:
HTPSELEX - a database of high-throughput SELEX libraries for transcription factor binding sites. 90-94 - Dominique Vlieghe, Albin Sandelin, Pieter J. De Bleser, Kris Vleminckx, Wyeth W. Wasserman, Frans van Roy, Boris Lenhard:
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. 95-97 - Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim Hui-Ming Huang, Ramana V. Davuluri:
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. 98-103 - Xin Chen, Jianmin Wu, Klaus Hornischer, Alexander E. Kel, Edgar Wingender:
TiProD: the Tissue-specific Promoter Database. 104-107 - V. Matys, Olga V. Kel-Margoulis, Ellen Fricke, Ines Liebich, Sigrid Land, A. Barre-Dirrie, Ingmar Reuter, D. Chekmenev, Mathias Krull, Klaus Hornischer, Nico Voss, Philip Stegmaier, Birgit Lewicki-Potapov, H. Saxel, Alexander E. Kel, Edgar Wingender:
TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes. 108-110 - Tala Bakheet, Bryan R. G. Williams, Khalid S. A. Khabar:
ARED 3.0: the large and diverse AU-rich transcriptome. 111-114 - Priyanka Shahi, Serguei Loukianiouk, Andreas Bohne-Lang, Marc Kenzelmann, Stefan Küffer, Sabine Maertens, Roland Eils, Hermann-Josef Gröne, Norbert Gretz, Benedikt Brors:
Argonaute - a database for gene regulation by mammalian microRNAs. 115-118 - Rumen Kostadinov, Nishtha Malhotra, Manuel Viotti, Robert Shine, Lawrence D'Antonio, Paramjeet Singh Bagga:
GRSDB: a database of quadruplex forming G-rich sequences in alternatively processed mammalian pre-mRNA sequences. 119-124 - Martin Mokrejs, Václav Vopálenský, Ondrej Kolenaty, Tomás Masek, Zuzana Feketová, Petra Sekyrová, Barbora Skaloudová, Vítezslav Kríz, Martin Pospísek:
IRESite: the database of experimentally verified IRES structures (www.iresite.org). 125-130 - Liliana R. Stefan, Rui Zhang, Aaron G. Levitan, Donna K. Hendrix, Steven E. Brenner, Stephen R. Holbrook:
MeRNA: a database of metal ion binding sites in RNA structures. 131-134 - Paul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker:
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. 135-139 - Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright:
miRBase: microRNA sequences, targets and gene nomenclature. 140-144 - Stanislaw Dunin-Horkawicz, Anna Czerwoniec, Michal J. Gajda, Marcin Feder, Henri Grosjean, Janusz M. Bujnicki:
MODOMICS: a database of RNA modification pathways. 145-149 - Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baochen Shi, Xiaopeng Zhu, Zhihua Zhang, Geir Skogerbø, Lan Chen, Hongchao Lu, Yi Zhao, Runsheng Chen:
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. 150-152 - Andrew J. Olson, Nihar Sheth, Jason S. Lee, G. J. Hannon, Ravi Sachidanandam:
RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs. 153-157 - Laurent Lestrade, Michel J. Weber:
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. 158-162 - Ebbe Sloth Andersen, Magnus Alm Rosenblad, Niels Larsen, Jesper Cairo Westergaard, Jody Burks, Iwona K. Wower, Jacek Wower, Jan Gorodkin, Tore Samuelsson, Christian Zwieb:
The tmRDB and SRPDB resources. 163-168 - Hans-Werner Mewes, Dmitrij Frishman, Klaus F. X. Mayer, Martin Münsterkötter, Octave Noubibou, Philipp Pagel, Thomas Rattei, Matthias Oesterheld, Andreas Ruepp, Volker Stümpflen:
MIPS: analysis and annotation of proteins from whole genomes in 2005. 169-172 - David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David L. Kenton, Oleg Khovayko, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Stephen T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tugba O. Suzek, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information. 173-180 - Milton H. Saier Jr., Can V. Tran, Ravi D. Barabote:
TCDB: the Transporter Classification Database for membrane transport protein analyses and information. 181-186 - Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek:
The Universal Protein Resource (UniProt): an expanding universe of protein information. 187-191 - Jason P. Mulvenna, Conan K. L. Wang, David J. Craik:
CyBase: a database of cyclic protein sequence and structure. 192-194 - M. D. Shaji Kumar, M. Michael Gromiha:
PINT: Protein-protein Interactions Thermodynamic Database. 195-198 - Christopher P. Toseland, Helen M. McSparron, Matthew N. Davies, Darren R. Flower:
PPD v1.0 - an integrated, web-accessible database of experimentally determined protein pKa values. 199-203 - M. D. Shaji Kumar, K. Abdulla Bava, M. Michael Gromiha, Ponraj Prabakaran, Koji Kitajima, Hatsuho Uedaira, Akinori Sarai:
ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions. 204-206 - Michelle K. M. Chow, Abdullah A. Amin, Kate F. Fulton, Thushan Fernando, Lawrence Kamau, Chris Batty, Michael Louca, Storm Ho, James C. Whisstock, Stephen P. Bottomley, Ashley M. Buckle:
The REFOLD database: a tool for the optimization of protein expression and refolding. 207-212 - J. Lynn Fink, Rajith N. Aturaliya, Melissa J. Davis, Fasheng Zhang, Kelly Hanson, Melvena S. Teasdale, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Rohan D. Teasdale:
LOCATE: a mouse protein subcellular localization database. 213-217 - Anthony Kar Lun Leung, Laura Trinkle-Mulcahy, Yun Wah Lam, Jens S. Andersen, Matthias Mann, Angus I. Lamond:
NOPdb: Nucleolar Proteome Database. 218-220 - Rainer B. Lanz, Zeljko Jericevic, William J. Zuercher, Chris Watkins, David L. Steffen, Ronald Margolis, Neil J. McKenna:
Nuclear Receptor Signaling Atlas (www.nursa.org): hyperlinking the nuclear receptor signaling community. 221-226 - Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. A. Sigrist:
The PROSITE database. 227-230 - Nicola D. Gold, Richard M. Jackson:
SitesBase: a database for structure-based protein-ligand binding site comparisons. 231-234 - Aaron Birkland, Golan Yona:
BIOZON: a hub of heterogeneous biological data. 235-242 - V. S. Gowri, Oruganty Krishnadev, C. S. Swamy, Narayanaswamy Srinivasan:
MulPSSM: a database of multiple position-specific scoring matrices of protein domain families. 243-246 - Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman:
Pfam: clans, web tools and services. 247-251 - Thomas Rattei, Roland Arnold, Patrick Tischler, Dominik Lindner, Volker Stümpflen, Hans-Werner Mewes:
SIMAP: the similarity matrix of proteins. 252-256 - Ivica Letunic, Richard R. Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork:
SMART 5: domains in the context of genomes and networks. 257-260 - Alexander A. Zamyatnin, Alexander S. Borchikov, Michail G. Vladimirov, Olga L. Voronina:
The EROP-Moscow oligopeptide database. 261-266 - Marco Donizelli, Marie-Ange Djite, Nicolas Le Novère:
LGICdb: a manually curated sequence database after the genomes. 267-269 - Neil D. Rawlings, Fraser R. Morton, Alan J. Barrett:
MEROPS: the peptidase database. 270-272 - Chittibabu Guda, Lipika R. Pal, Ilya N. Shindyalov:
DMAPS: a database of multiple alignments for protein structures. 273-276 - Zhanwen Li, Yuzhen Ye, Adam Godzik:
Flexible Structural Neighborhood - a database of protein structural similarities and alignments. 277-280 - Corin Yeats, Michael Maibaum, Russell L. Marsden, Mark Dibley, David A. Lee, Sarah Addou, Christine A. Orengo:
Gene3D: modelling protein structure, function and evolution. 281-284 - Ganesan Pugalenthi, Anirban Bhaduri, Ramanathan Sowdhamini:
iMOTdb - a comprehensive collection of spatially interacting motifs in proteins. 285-286 - Mohammed Tagari, John G. Tate, G. J. Swaminathan, Richard H. Newman, Avi Naim, Wim F. Vranken, A. Kapopoulou, A. Hussain, Joël Fillon, Kim Henrick, Samir S. Velankar:
E-MSD: improving data deposition and structure quality. 287-290 - Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali:
MODBASE: a database of annotated comparative protein structure models and associated resources. 291-295 - Samuel Flores, Nathaniel Echols, Duncan Milburn, Brandon Hespenheide, Kevin Keating, Jason Lu, Stephen Wells, Eric Z. Yu, Michael Thorpe, Mark Gerstein:
The Database of Macromolecular Motions: new features added at the decade mark. 296-301 - Andrei Kouranov, Lei Xie, Joanna de la Cruz, Li Chen, John D. Westbrook, Philip E. Bourne, Helen M. Berman:
The RCSB PDB information portal for structural genomics. 302-305 - Tiziana Castrignanò, Paolo D'Onorio De Meo, Domenico Cozzetto, Ivano Giuseppe Talamo, Anna Tramontano:
The PMDB Protein Model Database. 306-309 - Christof Winter, Andreas Henschel, Wan Kyu Kim, Michael Schroeder:
SCOPPI: a structural classification of protein-protein interfaces. 310-314 - Jürgen Kopp, Torsten Schwede:
The SWISS-MODEL Repository: new features and functionalities. 315-318 - Tina A. Eyre, Fabrice Ducluzeau, Tam P. Sneddon, Sue Povey, Elspeth A. Bruford, Michael J. Lush:
The HUGO Gene Nomenclature Database, 2006 updates. 319-321 - The Gene Ontology (GO) project in 2006. 322-326
- Simon Whelan, Paul I. W. de Bakker, Emmanuel Quevillon, Nicolas Rodriguez, Nick Goldman:
PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. 327-331 - Konstantinos Liolios, Nektarios Tavernarakis, Philip Hugenholtz, Nikos Kyrpides:
The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. 332-334 - Roy R. Chaudhuri, Mark J. Pallen:
xBASE, a collection of online databases for bacterial comparative genomics. 335-337 - Emmanuel Perrodou, Caroline Deshayes, Jean Muller, Christine Schaeffer, Alain Van Dorsselaer, Raymond Ripp, Olivier Poch, Jean-Marc Reyrat, Odile Lecompte:
ICDS database: interrupted CoDing sequences in prokaryotic genomes. 338-343 - Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
The integrated microbial genomes (IMG) system. 344-348 - Ingo Paulsen, Arndt von Haeseler:
INVHOGEN: a database of homologous invertebrate genes. 349-353 - Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa:
From genomics to chemical genomics: new developments in KEGG. 354-357 - Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa:
ODB: a database of operons accumulating known operons across multiple genomes. 358-362 - Feng Chen, Aaron J. Mackey, Christian J. Stoeckert Jr., David S. Roos:
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. 363-368 - Natalia Maltsev, Elizabeth M. Glass, Dinanath Sulakhe, Alexis A. Rodriguez, Mustafa H. Syed, Tanuja Bompada, Yi Zhang, Mark D'Souza:
PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways. 369-372 - Huiquan Wang, Miroslava Kaloper, Craig J. Benham:
SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes. 373-378 - Sucheta Tripathy, Varun N. Pandey, Bing Fang, Fidel Salas, Brett M. Tyler:
VMD: a community annotation database for oomycetes and microbial genomes. 379-381 - Michael J. Adams, John F. Antoniw:
DPVweb: a comprehensive database of plant and fungal virus genes and genomes. 382-385 - Craig M. Shepherd, Ian A. Borelli, Gabriel Lander, Padmaja Natarajan, Vinay Siddavanahalli, Chandrajit L. Bajaj, John E. Johnson, Charles L. Brooks III, Vijay S. Reddy:
VIPERdb: a relational database for structural virology. 386-389 - Thierry Lombardot, Renzo Kottmann, Hauke Pfeffer, Michael Richter, Hanno Teeling, Christian Quast, Frank Oliver Glöckner:
Megx.net - database resources for marine ecological genomics. 390-393 - Heladia Salgado, Socorro Gama-Castro, Martín Peralta-Gil, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Alberto Santos-Zavaleta, Irma Martínez-Flores, Verónica Jiménez-Jacinto, César Bonavides-Martínez, Juan Segura-Salazar, Agustino Martínez-Antonio, Julio Collado-Vides:
RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. 394-397 - Jian Yang, Lihong Chen, Jun Yu, Lilian Sun, Qi Jin:
ShiBASE: an integrated database for comparative genomics of Shigella. 398-401 - Guido Dieterich, Uwe Kärst, Elmar Fischer, Jürgen Wehland, Lothar Jänsch:
LEGER: knowledge database and visualization tool for comparative genomics of pathogenic and non-pathogenic Listeria species. 402-406 - Kevin L. Schneider, Katherine S. Pollard, Robert Baertsch, Andy Pohl, Todd M. Lowe:
The UCSC Archaeal Genome Browser. 407-410 - Gopa R. Mishra, M. Suresh, K. Kumaran, N. Kannabiran, Shubha Suresh, P. Bala, K. Shivakumar, N. Anuradha, Raghunath Reddy, T. Madhan Raghavan, Shalini Menon, G. Hanumanthu, Malvika Gupta, Sapna Upendran, Shweta Gupta, M. Mahesh, Bincy Jacob, Pinky Mathew, Pritam Chatterjee, K. S. Arun, Salil Sharma, K. N. Chandrika, Nandan Deshpande, Kshitish Palvankar, R. Raghavnath, R. Krishnakanth, Hiren Karathia, B. Rekha, Rashmi Nayak, G. Vishnupriya, H. G. Mohan Kumar, M. Nagini, Ghantasala S. Sameer Kumar, Rojan Jose, P. Deepthi, S. Sujatha Mohan, T. K. B. Gandhi, H. C. Harsha, Krishna S. Deshpande, Malabika Sarker, T. S. Keshava Prasad, Akhilesh Pandey:
Human protein reference database - 2006 update. 411-414 - Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, Coral del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, Jeremy C. Simpson, Oliver Hofmann, Winston Hide, Karl-Heinz Glatting, Wolfgang Huber, Rainer Pepperkok, Annemarie Poustka, Stefan Wiemann:
The LIFEdb database in 2006. 415-418 - Mark Heiges, Haiming Wang, Edward Robinson, Cristina Aurrecoechea, Xin Gao, Nivedita Kaluskar, Philippa M. Rhodes, Sammy Wang, Congzhou He, Yanqi Su, John A. Miller, Eileen T. Kraemer, Jessica C. Kissinger:
CryptoDB: a Cryptosporidium bioinformatics resource update. 419-422 - Rex L. Chisholm, Pascale Gaudet, Eric M. Just, Karen E. Pilcher, Petra Fey, Sohel N. Merchant, Warren A. Kibbe:
dictyBase, the model organism database for Dictyostelium discoideum. 423-427 - Fernán Agüero, Wenlong Zheng, D. Brent Weatherly, Pablo N. Mendes, Jessica C. Kissinger:
TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi. 428-431 - David James Sherman, Pascal Durrens, Florian Iragne, Emmanuelle Beyne, Macha Nikolski, Jean-Luc Souciet:
Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts. 432-435 - Ulrich Güldener, Martin Münsterkötter, Matthias Oesterheld, Philipp Pagel, Andreas Ruepp, Hans-Werner Mewes, Volker Stümpflen:
MPact: the MIPS protein interaction resource on yeast. 436-441 - Jodi E. Hirschman, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Eurie L. Hong, Michael S. Livstone, Robert S. Nash, Julie Park, Rose Oughtred, Marek S. Skrzypek, Barry Starr, Chandra L. Theesfeld, Jennifer M. Williams, Rey Andrada, Gail Binkley, Qing Dong, Christopher Lane, Stuart R. Miyasato, Anand Sethuraman, Mark Schroeder, Mayank K. Thanawala, Shuai Weng, Kara Dolinski, David Botstein, J. Michael Cherry:
Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. 442-445 - Miguel C. Teixeira, Pedro T. Monteiro, Pooja Jain, Sandra Tenreiro, Alexandra R. Fernandes, Nuno P. Mira, Marta Alenquer, Ana T. Freitas, Arlindo L. Oliveira, Isabel Sá-Correia:
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. 446-451 - Kevin P. Byrne, Kenneth H. Wolfe:
Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser. 452-455 - Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes, Gerhard Adam:
FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum. 456-458 - Rainer Winnenburg, Thomas K. Baldwin, Martin Urban, Christopher J. Rawlings, Jacob Köhler, Kim E. Hammond-Kosack:
PHI-base: a new database for pathogen host interactions. 459-464 - Kamal Gajendran, Michael D. Gonzales, Andrew D. Farmer, Eric Archuleta, Joe Win, Mark E. Waugh, Sophien Kamoun:
Phytophthora functional genomics database (PFGD): functional genomics of phytophthora-plant interactions. 465-470 - David H. Johnson, Jun Tsao, Ming Luo, Mike Carson:
SGCEdb: a flexible database and web interface integrating experimental results and analysis for structural genomics focusing on Caenorhabditis elegans. 471-474 - Erich M. Schwarz, Igor Antoshechkin, Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Payan Canaran, Juancarlos Chan, Nansheng Chen, Wen J. Chen, Paul Davis, Tristan J. Fiedler, Lisa R. Girard, Todd W. Harris, Eimear Kenny, Ranjana Kishore, Daniel Lawson, Raymond Y. N. Lee, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky, Andrei Petcherski, Anthony Rogers, William Spooner, Mary Ann Tuli, Kimberly Van Auken, Daniel Wang, Richard Durbin, John Spieth, Lincoln D. Stein, Paul W. Sternberg:
WormBase: better software, richer content. 475-478 - David Sims, Borisas Bursteinas, Qiong Gao, Marketa Zvelebil, Buzz Baum:
FLIGHT: database and tools for the integration and cross-correlation of large-scale RNAi phenotypic datasets. 479-483 - Gary Grumbling, Victor B. Strelets:
FlyBase: anatomical data, images and queries. 484-488