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Ana T. Freitas
Person information
- affiliation: Instituto Superior Técnico, Lisbon, Portugal
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2020 – today
- 2023
- [c15]André Salgado
, Francisco Fernandes
, Ana Teresa Freitas
:
CSA-MEM: Enhancing Circular DNA Multiple Alignment Through Text Indexing Algorithms. ISBRA 2023: 509-517
2010 – 2019
- 2018
- [j18]Miguel Monteiro
, Ana Catarina Fonseca
, Ana Teresa Freitas
, Teresa Pinho e Melo
, Alexandre P. Francisco
, José M. Ferro
, Arlindo L. Oliveira
:
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 1953-1959 (2018) - 2017
- [i2]Jorge S. Oliveira, José Borbinha, Ana Teresa Freitas:
A Virtual Research Environment for the Oil and Gas Domain. ERCIM News 2017(109) (2017) - 2015
- [j17]Catia M. Machado, Dietrich Rebholz-Schuhmann, Ana T. Freitas
, Francisco M. Couto
:
The semantic web in translational medicine: current applications and future directions. Briefings Bioinform. 16(1): 89-103 (2015) - [j16]Jorge S. Oliveira, Wydemberg Araújo, Ana Isabela Lopes Sales
, Alaine de Brito Guerra, Sinara Carla da Silva Araújo, Ana Tereza Ribeiro de Vasconcelos
, Lucymara F. Agnez-Lima
, Ana Teresa Freitas
:
BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j15]Francisco Fernandes
, Ana T. Freitas
:
slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array. Bioinform. 30(4): 464-471 (2014) - [j14]Filipe Ferreira, Miguel E. Coimbra
, Raquel Bairrão, Ricardo Viera, Ana T. Freitas, Luís M. S. Russo, José Borbinha:
Data Management in Metagenomics: A Risk Management Approach. Int. J. Digit. Curation 9(1): 41-56 (2014) - [j13]Miguel Cacho Teixeira
, Pedro Tiago Monteiro
, Joana Fernandes Guerreiro, Joana Pinho Gonçalves
, Nuno Pereira Mira
, Sandra Costa dos Santos
, Tânia Rodrigues Cabrito, Margarida Palma
, Catarina Costa
, Alexandre Paulo Francisco
, Sara Cordeiro Madeira
, Arlindo Limede Oliveira
, Ana Teresa Freitas
, Isabel Sá-Correia
:
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res. 42(Database-Issue): 161-166 (2014) - 2013
- [j12]Catia M. Machado, Ana T. Freitas
, Francisco M. Couto
:
Enrichment analysis applied to disease prognosis. J. Biomed. Semant. 4: 21 (2013) - [c14]Miguel E. Coimbra
, Francisco Fernandes
, Luís M. S. Russo, Ana T. Freitas
:
Parallel efficient aligner of pyrosequencing reads. EuroMPI 2013: 241-246 - 2012
- [j11]Nuno D. Mendes
, Steffen Heyne
, Ana T. Freitas
, Marie-France Sagot, Rolf Backofen:
Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches. Bioinform. 28(23): 3034-3041 (2012) - [c13]Catia M. Machado, Francisco M. Couto
, Alexandra R. Fernandes
, Susana Santos, Ana T. Freitas
:
Toward a Translational Medicine Approach for Hypertrophic Cardiomyopathy. ITBAM 2012: 151-165 - [e1]Ana T. Freitas
, Arcadi Navarro:
Bioinformatics for Personalized Medicine - 10th Spanish Symposium, JBI 2010, Torremolinos, Spain, October 27-29, 2010. Revised Selected Papers. Lecture Notes in Computer Science 6620, Springer 2012, ISBN 978-3-642-28061-0 [contents] - 2011
- [j10]Francisco Fernandes
, Paulo G. S. da Fonseca, Luís M. S. Russo, Arlindo L. Oliveira
, Ana T. Freitas
:
Efficient alignment of pyrosequencing reads for re-sequencing applications. BMC Bioinform. 12: 163 (2011) - [j9]Dulce Calçada, Susana Vinga
, Ana T. Freitas
, Arlindo L. Oliveira
:
Quantitative Modeling of the Saccharomyces cerevisiae Flr1 regulatory Network Using an S-System Formalism. J. Bioinform. Comput. Biol. 9(5): 613-630 (2011) - [j8]Dário Abdulrehman, Pedro T. Monteiro
, Miguel C. Teixeira
, Nuno P. Mira
, Artur B. Lourenço
, Sandra Costa dos Santos
, Tânia Rodrigues Cabrito, Alexandre P. Francisco
, Sara C. Madeira
, Ricardo Santos Aires, Arlindo L. Oliveira
, Isabel Sá-Correia
, Ana T. Freitas
:
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. Nucleic Acids Res. 39(Database-Issue): 136-140 (2011) - [c12]Dulce Calçada, Susana Vinga
, Ana T. Freitas
, Arlindo L. Oliveira
:
Quantitative Modeling the Saccharomyces cerevisiae FLR1 Regulatory Network Using an S-System Formalism. HISB 2011: 69-75 - 2010
- [c11]Alexandre P. Francisco
, Sophie Schbath
, Ana T. Freitas
, Arlindo L. Oliveira
:
Using graph modularity analysis to identify transcription factor binding sites. BIBM Workshops 2010: 19-26 - [c10]Catia M. Machado, Francisco M. Couto, Alexandra R. Fernandes
, Susana Santos
, Nuno Cardim, Ana T. Freitas
:
Semantic characterization of hypertrophic cardiomyopathy disease. BIBM Workshops 2010: 432-439 - [c9]Pedro T. Monteiro
, Ana T. Freitas
, Delphine Ropers
, Radu Mateescu, Hidde de Jong
:
Modeling and formal verification of biological regulatory networks: An integrative approach. BIBM Workshops 2010: 812-813 - [i1]Catia M. Machado, Francisco M. Couto
, Alexandra R. Fernandes, Susana Santos, Nuno Cardim, Ana T. Freitas:
Unraveling Hypertrophic Cardiomyopathy Variability. ERCIM News 2010(82): 48-49 (2010)
2000 – 2009
- 2009
- [j7]Francisco Fernandes
, Luísa Pereira
, Ana T. Freitas
:
CSA: An efficient algorithm to improve circular DNA multiple alignment. BMC Bioinform. 10 (2009) - [j6]Pedro T. Monteiro
, Estelle Dumas, Bruno Besson, Radu Mateescu, Michel Page, Ana T. Freitas
, Hidde de Jong
:
A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks. BMC Bioinform. 10: 450 (2009) - 2008
- [j5]Ana C. Casimiro, Susana Vinga
, Ana T. Freitas
, Arlindo L. Oliveira
:
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance. BMC Bioinform. 9 (2008) - [j4]Pedro T. Monteiro
, Nuno D. Mendes
, Miguel C. Teixeira
, Sofia d'Orey, Sandra Tenreiro
, Nuno P. Mira
, Hélio Pais
, Alexandre P. Francisco
, Alexandra M. Carvalho
, Artur B. Lourenço
, Isabel Sá-Correia
, Arlindo L. Oliveira
, Ana T. Freitas
:
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 36(Database-Issue): 132-136 (2008) - [c8]Pedro T. Monteiro
, Delphine Ropers
, Radu Mateescu, Ana T. Freitas, Hidde de Jong
:
Temporal Logic Patterns for Querying Qualitative Models of Genetic Regulatory Networks. ECAI 2008: 229-233 - [c7]Pedro T. Monteiro
, Delphine Ropers
, Radu Mateescu, Ana T. Freitas
, Hidde de Jong
:
Temporal logic patterns for querying dynamic models of cellular interaction networks. ECCB 2008: 227-233 - [c6]Alexandre P. Francisco
, Arlindo L. Oliveira
, Ana T. Freitas
:
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph. ISBRA 2008: 220-231 - 2006
- [j3]Nuno D. Mendes
, Ana C. Casimiro, Pedro M. Santos
, Isabel Sá-Correia
, Arlindo L. Oliveira
, Ana T. Freitas
:
MUSA: a parameter free algorithm for the identification of biologically significant motifs. Bioinform. 22(24): 2996-3002 (2006) - [j2]Miguel C. Teixeira
, Pedro T. Monteiro
, Pooja Jain, Sandra Tenreiro
, Alexandra R. Fernandes
, Nuno P. Mira
, Marta Alenquer
, Ana T. Freitas
, Arlindo L. Oliveira, Isabel Sá-Correia
:
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Res. 34(Database-Issue): 446-451 (2006) - [j1]Alexandra M. Carvalho
, Ana T. Freitas
, Arlindo L. Oliveira
, Marie-France Sagot:
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 3(2): 126-140 (2006) - 2005
- [c5]Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot:
A highly scalable algorithm for the extraction of CIS-regulatory regions. APBC 2005: 273-282 - 2004
- [c4]Alexandra M. Carvalho, Arlindo L. Oliveira
, Ana T. Freitas, Marie-France Sagot:
A parallel algorithm for the extraction of structured motifs. SAC 2004: 147-153 - [c3]Alexandra M. Carvalho
, Ana T. Freitas
, Arlindo L. Oliveira
, Marie-France Sagot:
Efficient Extraction of Structured Motifs Using Box-Links. SPIRE 2004: 267-268 - 2003
- [c2]Ana T. Freitas, Arlindo L. Oliveira:
Implicit Resolution of the Chapman-Kolmogorov Equations for Sequential Circuits: An Application in Power Estimation. DATE 2003: 10764-10769 - 2001
- [c1]Ana T. Freitas, Arlindo L. Oliveira:
Circuit partitioning techniques for power estimation using the full set of input correlations. ICECS 2001: 903-907
Coauthor Index
aka: Arlindo Limede Oliveira
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last updated on 2024-06-07 19:59 CEST by the dblp team
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