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ORCIDAlexandre G. de Brevern
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2020 – today
- 2022
[j28]Gabriel Cretin
, Tatiana Galochkina, Yann Vander Meersche, Alexandre G. de Brevern, Guillaume Postic, Jean-Christophe Gelly:
SWORD2: hierarchical analysis of protein 3D structures. Nucleic Acids Res. 50(W1): 732-738 (2022)- [j27]Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern:
Shaking the β-Bulges. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 14-18 (2022)
2010 – 2019
- 2019
- [j26]Vincent Demolombe, Alexandre G. de Brevern, Liza Figueredo Felicori, Christophe Nguyen, Ricardo Andrez Machado de Avila, Lionel Valera, Bénédicte Jardin-Watelet, Géraldine Lavigne, Aurélien Lebreton, Franck Molina, Violaine Moreau:
PEPOP 2.0: new approaches to mimic non-continuous epitopes. BMC Bioinform. 20(1): 387:1-387:14 (2019) - [j25]Vincent Demolombe, Alexandre G. de Brevern, Franck Molina, Géraldine Lavigne, Claude Granier, Violaine Moreau:
Benchmarking the PEPOP methods for mimicking discontinuous epitopes. BMC Bioinform. 20(1): 738 (2019) - [j24]Guilhem Faure, Agnel Praveen Joseph, Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern:
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach. Source Code Biol. Medicine 14(1) (2019) - 2018
- [j23]Sneha Vishwanath, Alexandre G. de Brevern, Narayanaswamy Srinivasan:
Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains. PLoS Comput. Biol. 14(2) (2018) - 2015
- [j22]Yassine Ghouzam, Guillaume Postic, Alexandre G. de Brevern, Jean-Christophe Gelly:
Improving protein fold recognition with hybrid profiles combining sequence and structure evolution. Bioinform. 31(23): 3782-3789 (2015) - 2014
- [j21]Romain Chebrek, Sylvain Léonard, Alexandre G. de Brevern, Jean-Christophe Gelly:
PolyprOnline: polyproline helix II and secondary structure assignment database. Database J. Biol. Databases Curation 2014 (2014) - [j20]Pierrick Craveur, Joseph Rebehmed, Alexandre G. de Brevern:
PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins. Database J. Biol. Databases Curation 2014 (2014) - 2013
- [j19]Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard O. Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan:
DoSA: Database of Structural Alignments. Database J. Biol. Databases Curation 2013 (2013) - [j18]Jeremy Esque, Sylvain Léonard, Alexandre G. de Brevern, Christophe Oguey:
VLDP web server: a powerful geometric tool for analysing protein structures in their environment. Nucleic Acids Res. 41(Webserver-Issue): 373-378 (2013) - 2012
- [j17]Alexandre G. de Brevern, Aurélie Bornot, Pierrick Craveur, Catherine Etchebest, Jean-Christophe Gelly:
PredyFlexy: flexibility and local structure prediction from sequence. Nucleic Acids Res. 40(Web-Server-Issue): 317-322 (2012) - 2011
- [j16]Jean-Christophe Gelly, Alexandre G. de Brevern:
Protein Peeling 3D: new tools for analyzing protein structures. Bioinform. 27(1): 132-133 (2011) - [j15]Jeremy Esque, Christophe Oguey, Alexandre G. de Brevern:
Comparative Analysis of Threshold and Tessellation Methods for Determining Protein Contacts. J. Chem. Inf. Model. 51(2): 493-507 (2011) - [j14]Jean-Christophe Gelly, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre G. de Brevern:
iPBA: a tool for protein structure comparison using sequence alignment strategies. Nucleic Acids Res. 39(Web-Server-Issue): 18-23 (2011) - 2010
- [j13]Ksenia Oguievetskaia, Laetitia Martin-Chanas, Artem Vorotyntsev, Olivia Doppelt-Azeroual, Xavier Brotel, Stewart A. Adcock, Alexandre G. de Brevern, François Delfaud, Fabrice Moriaud:
Computational fragment-based drug design to explore the hydrophobic subpocket of the mitotic kinesin Eg5 allosteric binding site. J. Cheminformatics 2(S-1): 29 (2010) - [j12]Jeremy Esque, Christophe Oguey, Alexandre G. de Brevern:
A Novel Evaluation of Residue and Protein Volumes by Means of Laguerre Tessellation. J. Chem. Inf. Model. 50(5): 947-960 (2010)
2000 – 2009
- 2009
- [j11]Manoj Tyagi, Aurélie Bornot, Bernard O. Offmann, Alexandre G. de Brevern:
Protein short loop prediction in terms of a structural alphabet. Comput. Biol. Chem. 33(4): 329-333 (2009) - [j10]Ksenia Oguievetskaia, Laetitia Martin-Chanas, Artem Vorotyntsev, Olivia Doppelt-Azeroual, Xavier Brotel, Stewart A. Adcock, Alexandre G. de Brevern, François Delfaud, Fabrice Moriaud:
Computational fragment-based drug design to explore the hydrophobic sub-pocket of the mitotic kinesin Eg5 allosteric binding site. J. Comput. Aided Mol. Des. 23(8): 571-582 (2009) - 2006
- [j9]Jean-Christophe Gelly, Alexandre G. de Brevern, Serge A. Hazout:
'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments. Bioinform. 22(2): 129-133 (2006) - [j8]Jean-Christophe Gelly, Catherine Etchebest, Serge A. Hazout, Alexandre G. de Brevern:
Protein Peeling 2: a web server to convert protein structures into series of protein units. Nucleic Acids Res. 34(Web-Server-Issue): 75-78 (2006) - [j7]Manoj Tyagi, P. Sharma, C. S. Swamy, F. Cadet, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard O. Offmann:
Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. Nucleic Acids Res. 34(Web-Server-Issue): 119-123 (2006) - 2005
- [j6]Alexandre G. de Brevern:
New assessment of a structural alphabet. Silico Biol. 5(3): 283-289 (2005) - 2004
- [j5]Laurent Fourrier, Cristina Benros, Alexandre G. de Brevern:
Use of a structural alphabet for analysis of short loops connecting repetitive structures. BMC Bioinform. 5: 58 (2004) - [j4]Alexandre G. de Brevern, Serge A. Hazout, Alain Malpertuy:
Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering. BMC Bioinform. 5: 114 (2004) - [j3]Alexandre G. de Brevern, Cristina Benros, Romain Gautier, Hélène Valadié, Serge A. Hazout, Catherine Etchebest:
Local backbone structure prediction of proteins. Silico Biol. 4(3): 381-386 (2004) - 2003
- [j2]Alexandre G. de Brevern, Serge A. Hazout:
'Hybrid Protein Model' for optimally defining 3D protein structure fragments. Bioinform. 19(3): 345-353 (2003) - [c2]Cristina Benros, Alexandre G. de Brevern, Serge A. Hazout:
Hybrid protein model (HPM): a method for building a library of overlapping local structural prototypes. Sensitivity study and improvements of the training. NNSP 2003: 53-70 - 2002
- [j1]Alexandre G. de Brevern, France Loirat, Anne Badel-Chagnon, Cécile André, Pierre Vincens, Serge A. Hazout:
Genome Compartimentation by a Hybrid Chromosome Model (HM). Application to Saccharomyces Cerevisae Subtelomeres. Comput. Chem. 26(5): 437-445 (2002) - 2000
- [c1]Alexandre G. de Brevern, Serge A. Hazout:
Hybrid Protein Model (HPM): A Method to Compact Protein 3D-Structure Information and Physicochemical Properties. SPIRE 2000: 49-54
Coauthor Index
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