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ORCIDRita Casadio
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- affiliation: University of Bologna, Italy
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2020 – today
- 2023
[j69]Giovanni Madeo, Castrense Savojardo
, Matteo Manfredi, Pier Luigi Martelli, Rita Casadio:
CoCoNat: a novel method based on deep learning for coiled-coil prediction. Bioinform. 39(8) (2023)- 2022
- [j68]Matteo Manfredi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio:
E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants. Bioinform. 38(23): 5168-5174 (2022) - 2021
- [j67]Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Piero Fariselli:
On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation. Briefings Bioinform. 22(1): 601-603 (2021) - [j66]Davide Baldazzi, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio:
BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation. Nucleic Acids Res. 49(Webserver-Issue): 60-66 (2021) - 2020
- [j65]Castrense Savojardo, Niccolò Bruciaferri, Giacomo Tartari, Pier Luigi Martelli, Rita Casadio:
DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks. Bioinform. 36(1): 56-64 (2020) - [j64]Castrense Savojardo, Pier Luigi Martelli, Giacomo Tartari, Rita Casadio:
Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito. BMC Bioinform. 21-S(8): 266 (2020)
2010 – 2019
- 2019
- [j63]Ludovica Montanucci, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Piero Fariselli:
On the biases in predictions of protein stability changes upon variations: the INPS test case. Bioinform. 35(14): 2525-2527 (2019) - [r2]Pier Luigi Martelli, Giuseppe Profiti, Rita Casadio:
Protein Functional Annotation. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 8-14 - [r1]Pier Luigi Martelli, Castrense Savojardo, Giuseppe Profiti, Rita Casadio:
Transmembrane Domain Prediction. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 46-52 - 2018
- [j62]Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
DeepSig: deep learning improves signal peptide detection in proteins. Bioinform. 34(10): 1690-1696 (2018) - [j61]Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Rita Casadio:
BUSCA: an integrative web server to predict subcellular localization of proteins. Nucleic Acids Res. 46(Webserver-Issue): W459-W466 (2018) - 2017
- [j60]Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments. Bioinform. 33(3): 347-353 (2017) - [j59]Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
ISPRED4: interaction sites PREDiction in protein structures with a refining grammar model. Bioinform. 33(11): 1656-1663 (2017) - [j58]Giuseppe Profiti, Pier Luigi Martelli, Rita Casadio:
The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation. Nucleic Acids Res. 45(Webserver-Issue): W285-W290 (2017) - 2016
- [j57]Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
INPS-MD: a web server to predict stability of protein variants from sequence and structure. Bioinform. 32(16): 2542-2544 (2016) - [j56]Samuele Bovo, Pietro Di Lena, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
NET-GE: a web-server for NETwork-based human gene enrichment. Bioinform. 32(22): 3489-3491 (2016) - [j55]Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak:
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - 2015
- [j54]Piero Fariselli, Pier Luigi Martelli, Castrense Savojardo, Rita Casadio:
INPS: predicting the impact of non-synonymous variations on protein stability from sequence. Bioinform. 31(17): 2816-2821 (2015) - [j53]Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins. Bioinform. 31(20): 3269-3275 (2015) - [j52]Giuseppe Profiti, Piero Fariselli, Rita Casadio:
AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints. Bioinform. 31(23): 3841-3843 (2015) - 2014
- [j51]Castrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs. Bioinform. 30(20): 2973-2974 (2014) - 2013
- [j50]Damiano Piovesan, Giuseppe Profiti, Pier Luigi Martelli, Piero Fariselli, Luca Fontanesi, Rita Casadio:
SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation. Database J. Biol. Databases Curation 2013 (2013) - [j49]Castrense Savojardo, Piero Fariselli, Rita Casadio:
BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes. Bioinform. 29(4): 504-505 (2013) - [j48]Valentina Indio, Pier Luigi Martelli, Castrense Savojardo, Piero Fariselli, Rita Casadio:
The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields. Bioinform. 29(8): 981-988 (2013) - [j47]Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming. Bioinform. 29(24): 3151-3157 (2013) - [j46]Pietro Di Lena, Gang Wu, Pier Luigi Martelli, Rita Casadio, Christine Nardini:
MIMO: an efficient tool for molecular interaction maps overlap. BMC Bioinform. 14: 159 (2013) - [j45]Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations. BMC Bioinform. 14(S-1): S10 (2013) - [j44]Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Andrea Zauli, Ivan Rossi, Rita Casadio:
How to inherit statistically validated annotation within BAR+ protein clusters. BMC Bioinform. 14(S-3): S4 (2013) - [j43]Damiano Piovesan, Giuseppe Profiti, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
Extended and Robust Protein Sequence Annotation over Conservative Nonhierarchical Clusters: The Case Study of the ABC Transporters. ACM J. Emerg. Technol. Comput. Syst. 9(4): 27:1-27:8 (2013) - [c32]Giuseppe Profiti, Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
Community Detection within Clusters Helps Large Scale Protein Annotation - Preliminary Results of Modularity Maximization for the BAR+ Database. BIOINFORMATICS 2013: 328-332 - [c31]Giuseppe Profiti, Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
Protein Sequence Annotation by means of Community Detection. IWBBIO 2013: 753-755 - 2012
- [j42]Damiano Piovesan, Giuseppe Profiti, Pier Luigi Martelli, Rita Casadio:
The human "magnesome": detecting magnesium binding sites on human proteins. BMC Bioinform. 13(S-14): S10 (2012) - 2011
- [j41]Marco Vassura, Pietro di Lena, Luciano Margara, Maria Mirto, Giovanni Aloisio, Piero Fariselli, Rita Casadio:
Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure. BioData Min. 4: 1 (2011) - [j40]Andrea Pierleoni, Pier Luigi Martelli, Rita Casadio:
MemLoci: predicting subcellular localization of membrane proteins in eukaryotes. Bioinform. 27(9): 1224-1230 (2011) - [j39]Castrense Savojardo, Piero Fariselli, Monther Alhamdoosh, Pier Luigi Martelli, Andrea Pierleoni, Rita Casadio:
Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization. Bioinform. 27(16): 2224-2230 (2011) - [j38]Castrense Savojardo, Piero Fariselli, Rita Casadio:
Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines. Bioinform. 27(22): 3123-3128 (2011) - [j37]Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole:
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Res. 39(Database-Issue): 80-85 (2011) - [j36]Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Andrea Zauli, Ivan Rossi, Rita Casadio:
BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences. Nucleic Acids Res. 39(Web-Server-Issue): 197-202 (2011) - [j35]Andrea Pierleoni, Valentina Indio, Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
MemPype: a pipeline for the annotation of eukaryotic membrane proteins. Nucleic Acids Res. 39(Web-Server-Issue): 375-380 (2011) - [j34]Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio:
Is There an Optimal Substitution Matrix for Contact Prediction with Correlated Mutations? IEEE ACM Trans. Comput. Biol. Bioinform. 8(4): 1017-1028 (2011) - [c30]Monther Alhamdoosh, Castrense Savojardo, Piero Fariselli, Rita Casadio:
Disulfide Connectivity Prediction with Extreme Learning Machines. BIOINFORMATICS 2011: 5-14 - [c29]Castrense Savojardo, Piero Fariselli, Damiano Piovesan, Pier Luigi Martelli, Rita Casadio:
Machine-Learning Methods to Predict Protein Interaction Sites in Folded Proteins. CIBB 2011: 127-135 - [p1]Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio:
Divide and Conquer Strategies for Protein Structure Prediction. Mathematical Approaches to Polymer Sequence Analysis and Related Problems 2011: 23-46 - 2010
- [j33]Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio:
Fast overlapping of protein contact maps by alignment of eigenvectors. Bioinform. 26(18): 2250-2258 (2010) - [c28]Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Priyank Shukla, Rita Casadio:
Prediction of the Bonding State of Cysteine Residues in Proteins with Machine-Learning Methods. CIBB 2010: 98-111
2000 – 2009
- 2009
- [j32]Pietro di Lena, Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio:
On the Reconstruction of Three-dimensional Protein Structures from Contact Maps. Algorithms 2(1): 76-92 (2009) - [j31]Piero Fariselli, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio:
Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications. Algorithms Mol. Biol. 4: 13 (2009) - [j30]Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio:
A graph theoretic approach to protein structure selection. Artif. Intell. Medicine 45(2-3): 229-237 (2009) - [j29]Iakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress:
Progress and challenges in predicting protein-protein interaction sites. Briefings Bioinform. 10(3): 233-246 (2009) - [j28]Lisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio:
CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information. Bioinform. 25(21): 2757-2763 (2009) - [c27]Piero Fariselli, Lisa Bartoli, Rita Casadio:
Improving Coiled-Coil Prediction with Evolutionary Information. CIBB 2009: 20-32 - [c26]Lisa Bartoli, Pier Luigi Martelli, Ivan Rossi, Piero Fariselli, Rita Casadio:
Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks. CMSB 2009: 1-17 - [c25]Pietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio:
On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices. WABI 2009: 62-72 - 2008
- [j27]Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio:
FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. Bioinform. 24(10): 1313-1315 (2008) - [j26]Emidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio:
A three-state prediction of single point mutations on protein stability changes. BMC Bioinform. 9(S-2) (2008) - [j25]Andrea Pierleoni, Pier Luigi Martelli, Rita Casadio:
PredGPI: a GPI-anchor predictor. BMC Bioinform. 9 (2008) - [j24]Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio:
Reconstruction of 3D Structures From Protein Contact Maps. IEEE ACM Trans. Comput. Biol. Bioinform. 5(3): 357-367 (2008) - [c24]Pietro di Lena, Luciano Margara, Marco Vassura, Piero Fariselli, Rita Casadio:
A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions. CIBB 2008: 210-221 - [c23]Maria Mirto, Alessandra Ferramosca, Daniele Tartarini, Simone Romano, Alessandro Negro, Gianluca Tasco, Sandro Fiore, Vincenzo Zara, Rita Casadio, Giovanni Aloisio:
A Protein Structure Prediction Service in the ProGenGrid System. HealthGrid 2008: 135-146 - [c22]Ludovica Montanucci, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
Predicting protein thermostability changes from sequence upon multiple mutations. ISMB 2008: 190-195 - [e2]Rita Casadio, Ovidiu Daescu, Cosmin Dini, Daniela Stan Raicu:
International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies, BIOTECHNO 2008, June 29 - July 5, 2008, Bucharest, Romania. IEEE Computer Society 2008, ISBN 978-0-7695-3191-5 [contents] - 2007
- [j23]Piero Fariselli, Ivan Rossi, Emidio Capriotti, Rita Casadio:
The WWWH of remote homolog detection: The state of the art. Briefings Bioinform. 8(2): 78-87 (2007) - [j22]Emidio Capriotti, Rita Casadio:
K-Fold: a tool for the prediction of the protein folding kinetic order and rate. Bioinform. 23(3): 385-386 (2007) - [j21]Lisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G. Mita, Rita Casadio:
A computational approach for detecting peptidases and their specific inhibitors at the genome level. BMC Bioinform. 8(S-1) (2007) - [j20]Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole:
Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics. BMC Bioinform. 8(S-1) (2007) - [j19]Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
eSLDB: eukaryotic subcellular localization database. Nucleic Acids Res. 35(Database-Issue): 208-212 (2007) - [j18]Rita Casadio:
Guest Editor's Introduction to the Special Section on Computational Biology and Bioinformatics (WABI) - Part 2. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 3 (2007) - [c21]Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh:
Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD 2007: 292-302 - [c20]Marco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio:
Reconstruction of 3D Structures from Protein Contact Maps. ISBRA 2007: 578-589 - [c19]Maria Mirto, Ivan Rossi, Italo Epicoco, Sandro Fiore, Piero Fariselli, Rita Casadio, Giovanni Aloisio:
High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment. ISPA Workshops 2007: 414-423 - [c18]Luciana Carota, Lisa Bartoli, Piero Fariselli, Pier Luigi Martelli, Ludovica Montanucci, Giorgio Pietro Maggi, Rita Casadio:
High Throughput Comparison of Prokaryotic Genomes. PPAM 2007: 1200-1209 - [c17]Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio:
Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. WABI 2007: 25-37 - [c16]Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio:
A Graph Theoretic Approach to Protein Structure Selection. WILF 2007: 497-504 - 2006
- [j17]Emidio Capriotti, Remo Calabrese, Rita Casadio:
Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. Bioinform. 22(22): 2729-2734 (2006) - [j16]Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Res. 34(Web-Server-Issue): 169-172 (2006) - [j15]Rita Casadio:
Guest Editor's Introduction to the Special Issue on Computational Biology and Bioinformatics - Part 1. IEEE ACM Trans. Comput. Biol. Bioinform. 3(4): 321-322 (2006) - [c15]Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
BaCelLo: a balanced subcellular localization predictor. ISMB (Supplement of Bioinformatics) 2006: 415-416 - 2005
- [j14]Piero Fariselli, Pier Luigi Martelli, Rita Casadio:
A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins. BMC Bioinform. 6(S-4) (2005) - [j13]Manuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone:
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. BMC Bioinform. 6(S-4) (2005) - [j12]Luciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella:
Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. BMC Bioinform. 6(S-4) (2005) - [j11]Piero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli, Pier Luigi Martelli, Rita Casadio:
TRAMPLE: the transmembrane protein labelling environment. Nucleic Acids Res. 33(Web-Server-Issue): 198-201 (2005) - [j10]Emidio Capriotti, Piero Fariselli, Rita Casadio:
I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res. 33(Web-Server-Issue): 306-310 (2005) - [c14]Emidio Capriotti, Piero Fariselli, Remo Calabrese, Rita Casadio:
Predicting protein stability changes from sequences using support vector machines. ECCB/JBI 2005: 58 - [e1]Rita Casadio, Gene Myers:
Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings. Lecture Notes in Computer Science 3692, Springer 2005, ISBN 3-540-29008-7 [contents] - 2004
- [j9]Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal:
ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinform. 20(8): 1322-1324 (2004) - [c13]Emidio Capriotti, Piero Fariselli, Rita Casadio:
A neural-network-based method for predicting protein stability changes upon single point mutations. ISMB/ECCB (Supplement of Bioinformatics) 2004: 63-68 - 2003
- [j8]Rita Casadio, Piero Fariselli, Pier Luigi Martelli:
In silico prediction of the structure of membrane proteins: Is it feasible? Briefings Bioinform. 4(4): 341-348 (2003) - [j7]Piero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi, Rita Casadio:
MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments. Bioinform. 19(4): 500-505 (2003) - [j6]Piero Fariselli, Giacomo Finocchiaro, Rita Casadio:
SPEPlip: the detection of signal peptide and lipoprotein cleavage sites. Bioinform. 19(18): 2498-2499 (2003) - [c12]Pier Luigi Martelli, Piero Fariselli, Rita Casadio:
An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins. ISMB (Supplement of Bioinformatics) 2003: 205-211 - [c11]Piero Fariselli, Andrea Zauli, Ivan Rossi, Michele Finelli, Pier Luigi Martelli, Rita Casadio:
A neural network method to improve prediction of protein-protein interaction sites in heterocomplexes. NNSP 2003: 33-41 - [c10]Piero Fariselli, Giacomo Finocchiaro, Rita Casadio:
Prediction of Signal Peptide in Proteins with Neural Networks. WIRN 2003: 237-244 - 2002
- [c9]Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio:
A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB 2002: 46-53 - 2001
- [j5]Piero Fariselli, Rita Casadio:
RCNPRED: prediction of the residue co-ordination numbers in proteins. Bioinform. 17(1): 202-204 (2001) - [j4]Piero Fariselli, Rita Casadio:
Prediction of disulfide connectivity in proteins. Bioinform. 17(10): 957-964 (2001) - [c8]Gianluca Pollastri, Pierre Baldi, Piero Fariselli, Rita Casadio:
Improved prediction of the number of residue contacts in proteins by recurrent neural networks. ISMB (Supplement of Bioinformatics) 2001: 234-242 - 2000
- [c7]Piero Fariselli, Rita Casadio:
Prediction of the Number of Residue Contacts in Proteins. ISMB 2000: 146-151
1990 – 1999
- 1999
- [c6]Rita Casadio, Mario Compiani, Piero Fariselli, Pier Luigi Martelli:
A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion. ISMB 1999: 68-76 - 1997
- [j3]Francesco Vivarelli, Piero Fariselli, Rita Casadio:
The Prediction of Protein Secondary Structure with a Cascade Correlation Learning Architecture of Neural Networks. Neural Comput. Appl. 6(1): 57-62 (1997) - [c5]Piero Fariselli, Rita Casadio:
Pseudodihedral Potential of Protein Residues and the Prediction of Folding. BCEC 1997: 112-121 - [c4]P. Arrigo, Piero Fariselli, Rita Casadio:
Self-Organizing Neural Maps of the Coding Sequences of G-protein-coupled Receptors Reveal Local Domains Associated with Potentially Functional Determinants in the Proteins. ISMB 1997: 44-47 - 1996
- [j2]