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Yu Xue 0001
Person information
- affiliation: Huazhong University of Science and Technology, Key Laboratory of Molecular Biophysics of Ministry of Education, Wuhan, China
- affiliation: University of Science and Technology of China, Laboratory of Cellular Dynamics, Hefei, China
Other persons with the same name
- Yu Xue — disambiguation page
- Yu Xue 0002
— Heilongjiang University, School of Mathematical Science, Harbin, China
- Yu Xue 0003
— Nanjing University of Information Science and Technology, School of Computer and Software, China
- Yu Xue 0004 — China University of Mining and Technology, School of Computer Science and Technology, Xuzhou, China (and 1 more)
- Yu Xue 0005
— Guangxi University, Institute of Physical Science and Technology, Nanning, China
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2020 – today
- 2023
- [j42]Muyang Huang, Yu Xue, Haojie Luo, Yi Wang, Yuan Tang, Qiyun Wen:
Dynamics of a Kuramoto Model with Two-Body and Three-Body Interactions. Int. J. Bifurc. Chaos 33(2): 2350025:1-2350025:9 (2023) - [j41]Wen-Kang Shen
, Si-Yi Chen
, Zi-Quan Gan, Yu-Zhu Zhang, Tao Yue, Miaomiao Chen, Yu Xue
, Hui Hu
, An-Yuan Guo
:
AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations. Nucleic Acids Res. 51(D1): 39-45 (2023) - [j40]Miaomiao Chen, Weizhi Zhang, Yujie Gou, Danyang Xu, Yuxiang Wei, Dan Liu, Cheng Han, Xinhe Huang, Chengzhi Li, Wanshan Ning
, Di Peng
, Yu Xue
:
GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins. Nucleic Acids Res. 51(W1): 243-250 (2023) - 2022
- [j39]Chenwei Wang
, Xiaodan Tan, Dachao Tang
, Yujie Gou, Cheng Han, Wanshan Ning
, Shaofeng Lin
, Weizhi Zhang
, Miaomiao Chen, Di Peng
, Yu Xue
:
GPS-Uber: a hybrid-learning framework for prediction of general and E3-specific lysine ubiquitination sites. Briefings Bioinform. 23(2) (2022) - [j38]Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Jingyao Zeng, Yadong Zhang, Yunfei Shang, Jialin Mai, Shuo Shi, Mingming Lu, Congfan Bu, Zhewen Zhang, Zhenglin Du, Yinying Wang, Hongen Kang, Tianyi Xu, Lili Hao, Peilin Jia, Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Tong Jin, Yuansheng Zhang, Dong Zou, Qiang Du, Changrui Feng, Lina Ma, Sisi Zhang, Anke Wang, Lili Dong, Yanqing Wang, Wan Liu, Xing Yan, Yunchao Ling, Zhihua Zhou, Wang Kang, Tao Zhang, Shuai Ma, Haoteng Yan, Zunpeng Liu, Zejun Ji, Yusheng Cai, Si Wang, Moshi Song, Jie Ren, Qi Zhou, Jing Qu, Weiqi Zhang, Guanghui Liu, Xu Chen, Tingting Chen, Yanling Sun, Caixia Yu, Bixia Tang, Junwei Zhu, Shuang Zhai, Yubin Sun, Qiancheng Chen, Xiaoyu Yang, Xin Zhang, Zhengqi Sang, Yonggang Wang, Yilin Zhao, Huanxin Chen, Li Lan, Yingke Ma, Yaokai Jia, Xinchang Zheng, Meili Chen, Ming Chen, Guangyi Niu, Rong Pan, Wei Jing, Jian Sang, Chang Liu, Yujia Xiong, Mochen Zhang, Guoliang Wang, Lizhi Yi, Wei Zhao, Song Wu, Zhuang Xiong, Rujiao Li, Zheng Gong, Lin Liu, Zhao Li, Qianpeng Li, Sicheng Luo, Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Yanyan Li, Fei Yang, Mengwei Li, Zhaohua Li, Dongmei Tian, Xiaonan Liu, Cuiping Li, Xufei Teng, Shuhui Song, Yang Zhang, Ruru Chen, Rongqin Zhang, Feng Xu, Yifan Wang, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yungang He, Zhen Yang, Lun Li, Na Li, Ying Cui, Guangya Duan, Gangao Wu, Tianhao Huang, Enhui Jin, Hailong Kang, Zhonghuang Wang, Hua Chen, Mingkun Li, Wanshan Ning, Yu Xue, Yanhu Liu, Qijun Zhou, Xingyan Liu, Longlong Zhang, Bingyu Mao, Shihua Zhang, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Haichun Jing, Yitong Pan, Leisheng Shi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Dan Liu, Chi Zhang, Zheng Zhao, Tao Jiang, Wanying Wu, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Shaofeng Lin, Chuijie Liu, Anyuan Guo, Hao Yuan, Tianhan Su, Yong E. Zhang, Yincong Zhou, Guoji Guo, Shanshan Fu, Xiaodan Tan, Weizhi Zhang, Mei Luo, Yubin Xie, Chenwei Wang, Xingyu Liao, Xin Gao, Jianxin Wang, Guiyan Xie, Chunhui Yuan, Feng Tian, Dechang Yang, Ge Gao, Dachao Tang, Wenyi Wu, Yujie Gou, Cheng Han, Qinghua Cui, Xiangshang Li, Chuan-Yun Li, Xiaotong Luo:
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. Nucleic Acids Res. 50(D1): 27-38 (2022) - [j37]Weizhi Zhang, Xiaodan Tan, Shaofeng Lin
, Yujie Gou, Cheng Han, Chi Zhang, Wanshan Ning
, Chenwei Wang, Yu Xue
:
CPLM 4.0: an updated database with rich annotations for protein lysine modifications. Nucleic Acids Res. 50(D1): 451-459 (2022) - [j36]Wanshan Ning
, Yuxiang Wei, Letian Gao
, Cheng Han, Yujie Gou, Shanshan Fu, Dan Liu, Chi Zhang, Xinhe Huang, Sicheng Wu
, Di Peng
, Chenwei Wang
, Yu Xue
:
HemI 2.0: an online service for heatmap illustration. Nucleic Acids Res. 50(W1): 405-411 (2022) - 2021
- [j35]Shaofeng Lin
, Chenwei Wang
, Jiaqi Zhou, Ying Shi, Chen Ruan, Yiran Tu, Lan Yao, Di Peng
, Yu Xue
:
EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes. Briefings Bioinform. 22(1): 298-307 (2021) - [j34]Wanshan Ning, Peiran Jiang, Yaping Guo, Chenwei Wang
, Xiaodan Tan, Weizhi Zhang, Di Peng
, Yu Xue
:
GPS-Palm: a deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins. Briefings Bioinform. 22(2): 1836-1847 (2021) - [j33]Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang
, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao
, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo:
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. Nucleic Acids Res. 49(Database-Issue): D18-D28 (2021) - 2020
- [j32]Chenwei Wang
, Hao-Dong Xu
, Shaofeng Lin
, Wankun Deng
, Jiaqi Zhou
, Ying Zhang
, Ying Shi
, Di Peng
, Yu Xue
:
GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins. Genom. Proteom. Bioinform. 18(1): 72-80 (2020) - [j31]Wanshan Ning
, Hao-Dong Xu
, Peiran Jiang
, Han Cheng
, Wankun Deng
, Yaping Guo
, Yu Xue
:
HybridSucc: A Hybrid-learning Architecture for General and Species-specific Succinylation Site Prediction. Genom. Proteom. Bioinform. 18(2): 194-207 (2020)
2010 – 2019
- 2019
- [j30]Yaping Guo, Di Peng
, Jiaqi Zhou
, Shaofeng Lin
, Chenwei Wang
, Wanshan Ning, Hao-Dong Xu, Wankun Deng, Yu Xue
:
iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains. Nucleic Acids Res. 47(Database-Issue): D344-D350 (2019) - 2018
- [j29]Zhang Zhang
, Yu Xue
, Fangqing Zhao
:
Bioinformatics Commons: The Cornerstone of Life and Health Sciences. Genom. Proteom. Bioinform. 16(4): 223-225 (2018) - [j28]Hao-Dong Xu
, Yongbo Wang
, Shaofeng Lin
, Wankun Deng
, Di Peng
, Qinghua Cui
, Yu Xue
:
PTMD: A Database of Human Disease-associated Post-translational Modifications. Genom. Proteom. Bioinform. 16(4): 244-251 (2018) - [j27]Yubin Xie
, Xiaotong Luo
, Yupeng Li
, Li Chen
, Wenbin Ma
, Junjiu Huang
, Jun Cui
, Yong Zhao
, Yu Xue
, Zhixiang Zuo
, Jian Ren
:
DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning. Genom. Proteom. Bioinform. 16(4): 294-306 (2018) - [j26]Ghazaleh Taherzadeh
, Yuedong Yang
, Hao-Dong Xu, Yu Xue
, Alan Wee-Chung Liew
, Yaoqi Zhou
:
Predicting lysine-malonylation sites of proteins using sequence and predicted structural features. J. Comput. Chem. 39(22): 1757-1763 (2018) - [j25]Jiaqi Zhou
, Yang Xu
, Shaofeng Lin
, Yaping Guo, Wankun Deng
, Ying Zhang, Anyuan Guo, Yu Xue
:
iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations. Nucleic Acids Res. 46(Database-Issue): D447-D453 (2018) - 2017
- [j24]Wankun Deng
, Yongbo Wang, Lili Ma
, Ying Zhang, Shahid Ullah
, Yu Xue
:
Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins. Briefings Bioinform. 18(4): 647-658 (2017) - [j23]Yang Xu
, Shuang Zhang, Shaofeng Lin
, Yaping Guo, Wankun Deng
, Ying Zhang, Yu Xue
:
WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes. Nucleic Acids Res. 45(Database-Issue): D264-D270 (2017) - [j22]Shujing Li
, Ke Shui, Ying Zhang, Yongqiang Lv, Wankun Deng
, Shahid Ullah
, Luoying Zhang, Yu Xue
:
CGDB: a database of circadian genes in eukaryotes. Nucleic Acids Res. 45(Database-Issue): D397-D403 (2017) - 2016
- [j21]Yu Xue
, Eric-Wubbo Lameijer
, Kai Ye
, Kunlin Zhang
, Suhua Chang
, Xiaoyue Wang
, Jianmin Wu
, Ge Gao
, Fangqing Zhao
, Jian Li
, Chunsheng Han
, Shuhua Xu
, Jing-Fa Xiao
, Xuerui Yang
, Xiaomin Ying
, Xuegong Zhang
, Wei-Hua Chen
, Yun Liu
, Zhang Zhang
, Kun Huang
, Jun Yu
:
Precision Medicine: What Challenges Are We Facing? Genom. Proteom. Bioinform. 14(5): 253-261 (2016) - 2015
- [j20]Zhicheng Pan, Bangshan Wang, Ying Zhang, Yongbo Wang, Shahid Ullah
, Jian Ren, Zexian Liu
, Yu Xue
:
dbPSP: a curated database for protein phosphorylation sites in prokaryotes. Database J. Biol. Databases Curation 2015 (2015) - [j19]Wenzhong Liu
, Yubin Xie
, Jiyong Ma, Xiaotong Luo, Peng Nie, Zhixiang Zuo
, Urs Lahrmann, Qi Zhao
, Yueyuan Zheng, Yong Zhao
, Yu Xue
, Jian Ren
:
IBS: an illustrator for the presentation and visualization of biological sequences. Bioinform. 31(20): 3359-3361 (2015) - [j18]Hong-Mei Zhang, Teng Liu
, Chun-Jie Liu
, Shuangyang Song, Xiantong Zhang, Wei Liu, Haibo Jia, Yu Xue
, An-Yuan Guo:
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. Nucleic Acids Res. 43(Database-Issue): 76-81 (2015) - [j17]Zhengnan Huang, Lili Ma
, Yongbo Wang, Zhicheng Pan, Jian Ren
, Zexian Liu
, Yu Xue
:
MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle. Nucleic Acids Res. 43(Database-Issue): 328-334 (2015) - 2014
- [j16]Han Cheng, Wankun Deng
, Yongbo Wang, Jian Ren
, Zexian Liu
, Yu Xue
:
dbPPT: a comprehensive database of protein phosphorylation in plants. Database J. Biol. Databases Curation 2014 (2014) - [j15]Yongbo Wang, Zexian Liu
, Han Cheng, Tianshun Gao, Zhicheng Pan, Qing Yang, Anyuan Guo, Yu Xue
:
EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases. Nucleic Acids Res. 42(Database-Issue): 496-502 (2014) - [j14]Zexian Liu
, Yongbo Wang, Tianshun Gao, Zhicheng Pan, Han Cheng, Qing Yang, Zhongyi Cheng, Anyuan Guo, Jian Ren
, Yu Xue
:
CPLM: a database of protein lysine modifications. Nucleic Acids Res. 42(Database-Issue): 531-536 (2014) - [j13]Qi Zhao
, Yubin Xie
, Yueyuan Zheng, Shuai Jiang, Wenzhong Liu, Weiping Mu, Zexian Liu
, Yong Zhao
, Yu Xue
, Jian Ren
:
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs. Nucleic Acids Res. 42(Webserver-Issue): 325-330 (2014) - 2013
- [j12]Zexian Liu, Jian Ren, Jun Cao, Jiang He, Xuebiao Yao, Changjiang Jin, Yu Xue:
Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes. Briefings Bioinform. 14(3): 344-360 (2013) - [j11]Tianshun Gao
, Zexian Liu
, Yongbo Wang, Han Cheng, Qing Yang, Anyuan Guo, Jian Ren
, Yu Xue
:
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation. Nucleic Acids Res. 41(Database-Issue): 445-451 (2013) - 2012
- [j10]Yuanwei Zhang
, Bo Xu, Yifan Yang
, Rongjun Ban, Huan Zhang, Xiaohua Jiang, Howard J. Cooke, Yu Xue
, Qinghua Shi:
CPSS: a computational platform for the analysis of small RNA deep sequencing data. Bioinform. 28(14): 1925-1927 (2012) - 2011
- [j9]Yuanwei Zhang
, Yifan Yang
, Huan Zhang, Xiaohua Jiang, Bo Xu, Yu Xue
, Yunxia Cao, Qian Zhai, Yong Zhai, Mingqing Xu, Howard J. Cooke, Qinghua Shi:
Prediction of novel pre-microRNAs with high accuracy through boosting and SVM. Bioinform. 27(10): 1436-1437 (2011) - [j8]Zexian Liu
, Jun Cao, Xinjiao Gao, Yanhong Zhou, Longping Wen
, Xiangjiao Yang, Xuebiao Yao, Jian Ren
, Yu Xue
:
CPLA 1.0: an integrated database of protein lysine acetylation. Nucleic Acids Res. 39(Database-Issue): 1029-1034 (2011) - 2010
- [j7]Jian Ren
, Zexian Liu
, Xinjiao Gao, Changjiang Jin, Mingliang Ye, Hanfa Zou, Longping Wen
, Zhaolei Zhang, Yu Xue
, Xuebiao Yao:
MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore. Nucleic Acids Res. 38(Database-Issue): 155-160 (2010)
2000 – 2009
- 2008
- [c2]YuZhong Zhao, Yun Xu, ZhiHao Wang, Changjiang Jin, Xinjiao Gao, Yu Xue, Xuebiao Yao:
Proteome-Wide Analysis of Amino Acid Absence in Composition and Plasticity. ICIC (1) 2008: 167-178 - 2006
- [j6]Fengfeng Zhou
, Yu Xue
, Xuebiao Yao, Ying Xu:
CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinform. 22(7): 894-896 (2006) - [j5]Yu Xue
, Ao Li, Lirong Wang, Huanqing Feng, Xuebiao Yao:
PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory. BMC Bioinform. 7: 163 (2006) - [j4]Yu Xue
, Hu Chen, Changjiang Jin, Zhirong Sun, Xuebiao Yao:
NBA-Palm: prediction of palmitoylation site implemented in Naïve Bayes algorithm. BMC Bioinform. 7: 458 (2006) - [j3]Hu Chen, Yu Xue
, Ni Huang, Xuebiao Yao, Zhirong Sun:
MeMo: a web tool for prediction of protein methylation modifications. Nucleic Acids Res. 34(Web-Server-Issue): 249-253 (2006) - [j2]Yu Xue
, Fengfeng Zhou
, Chuanhai Fu
, Ying Xu, Xuebiao Yao:
SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Res. 34(Web-Server-Issue): 254-257 (2006) - [c1]Yu Xue, Changjiang Jin, Xuebiao Yao:
HSPPIP: An Online Tool for Prediction of Protein-Protein Interactions in Humans. ICIC (3) 2006: 603-611 - 2005
- [j1]Yu Xue
, Fengfeng Zhou
, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao:
GPS: a comprehensive www server for phosphorylation sites prediction. Nucleic Acids Res. 33(Web-Server-Issue): 184-187 (2005)
Coauthor Index
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