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2010 – 2019
- 2017
[j23]David Páez-Espino, I-Min A. Chen, Krishna Palaniappan
, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides:
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45(Database-Issue): D457-D465 (2017)- [j22]I-Min A. Chen, Victor M. Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Evan Andersen, Marcel Huntemann, Neha Varghese, Michalis Hadjithomas, Kristin Tennessen, Torben Nielsen, Natalia Ivanova, Nikos Kyrpides:
IMG/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Res. 45(Database-Issue): D507-D516 (2017) - [j21]Michalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor M. Markowitz, Nikos Kyrpides, Natalia Ivanova:
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Res. 45(Database-Issue): D560-D565 (2017) - 2014
- [j20]Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides:
IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res. 42(Database-Issue): 560-567 (2014) - [j19]Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides:
IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res. 42(Database-Issue): 568-573 (2014) - [c36]I-Min A. Chen, Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Ken Chu:
Maintaining a microbial genome & metagenome data analysis system in an academic setting. SSDBM 2014: 3:1-3:11 - 2013
- [c35]Alexandru Romosan, Arie Shoshani, Kesheng Wu, Victor M. Markowitz, Konstantinos Mavrommatis:
Accelerating gene context analysis using bitmaps. SSDBM 2013: 26:1-26:12 - 2012
- [j18]Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40(Database-Issue): 115-122 (2012) - [j17]Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res. 40(Database-Issue): 123-129 (2012) - [j16]Ioanna Pagani, Konstantinos Liolios, Jakob Jansson, I-Min A. Chen, Tatyana Smirnova, Bahador Nosrat, Victor M. Markowitz, Nikos Kyrpides:
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 40(Database-Issue): 571-579 (2012) - 2010
- [j15]Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavrommatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor M. Markowitz, Nikos Kyrpides:
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 38(Database-Issue): 346-354 (2010) - [j14]Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res. 38(Database-Issue): 382-390 (2010)
2000 – 2009
- 2009
- [j13]Victor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides:
IMG ER: a system for microbial genome annotation expert review and curation. Bioinform. 25(17): 2271-2278 (2009) - [c34]Itai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter:
A Statistical Framework for the Functional Analysis of Metagenomes. RECOMB 2009: 496-511 - 2008
- [j12]Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res. 36(Database-Issue): 528-533 (2008) - [j11]Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides:
IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res. 36(Database-Issue): 534-538 (2008) - [c33]Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz:
Annotation of metagenome short reads using proxygenes. ECCB 2008: 7-13 - 2007
- [j10]Daniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, Gary L. Andersen, Victor M. Markowitz, Philip Hugenholtz:
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinform. 8 (2007) - 2006
- [j9]Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
The integrated microbial genomes (IMG) system. Nucleic Acids Res. 34(Database-Issue): 344-348 (2006) - [c32]Victor M. Markowitz:
An Application Driven Perspective on Biological Data Integration. DILS 2006: 1 - [c31]Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Héctor García Martín, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides:
An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) 2006: 359-367 - 2005
- [c30]Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Natalia Ivanova, Nikos Kyrpides:
The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. VLDB 2005: 1067-1078 - 2004
- [c29]Thodoros Topaloglou, Susan B. Davidson, H. V. Jagadish, Victor M. Markowitz, Evan W. Steeg, Mike Tyers:
Biological Data Management: Research, Practice and Opportunities. VLDB 2004: 1233-1236 - 2003
- [j8]Victor M. Markowitz:
Data Management Challenges for Molecular and Cell Biology: An Industry Perspective. OMICS 7(1): 121-122 (2003) - [p1]Victor M. Markowitz, John Campbell, I-Min A. Chen, Anthony Kosky, Krishna Palaniappan, Thodoros Topaloglou:
Integration Challenges in Gene Expression Data Management. Bioinformatics 2003: 277-301 - 2002
- [c28]Victor M. Markowitz, I-Min A. Chen, Anthony Kosky:
Gene Expression Data Management: A Case Study. EDBT 2002: 722-731 - 2001
- [c27]Victor M. Markowitz, Thodoros Topaloglou:
Applying Data Warehousing Concepts to Gene Expression Data Management. BIBE 2001: 65-72
1990 – 1999
- 1999
- [c26]Thodoros Topaloglou, Anthony Kosky, Victor M. Markowitz:
Seamless Integration of Biological Applications within a Database Framework. ISMB 1999: 272-281 - 1998
- [c25]Anthony Kosky, I-Min A. Chen, Victor M. Markowitz, Ernest Szeto:
Exploring Heterogeneous Biological Databases: Tools and Applications. EDBT 1998: 499-513 - [c24]I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto, Thodoros Topaloglou:
Advanced Query Mechanisms for Biological Databases. ISMB 1998: 43-51 - 1997
- [c23]I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto:
Developing and Accessing Scientific Databases with the OPM Data Management Tools. ICDE 1997: 580 - [c22]I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto:
Developing and Accessing Scientific Databases with the Object-Protocol (OPM) Data Management Tools. SSDBM 1997: 114-115 - [c21]I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto:
Constructing and Maintaining Scientific Database Views in the Framework of the Object-Protocol Model. SSDBM 1997: 237-248 - 1996
- [c20]I-Min A. Chen, Victor M. Markowitz, Stanley Letovsky, Peter Li, Kenneth H. Fasman:
Version Management for Scientific Databases. EDBT 1996: 289-303 - 1995
- [j7]I-Min A. Chen, Victor M. Markowitz:
An Overview of the Object-Protocol Model (OPM) and OPM Data Management Tools. Inf. Syst. 20(5): 393-418 (1995) - [j6]Victor M. Markowitz:
Heterogeneous Molecular Biology Databases. J. Comput. Biol. 2(4): 537-538 (1995) - [j5]Victor M. Markowitz, Otto Ritter:
Characterizing Heterogeneous Molecular Biology Database Systems. J. Comput. Biol. 2(4): 547-556 (1995) - [c19]I-Min A. Chen, Victor M. Markowitz:
Modeling Scientific Experiments with an Object Data Model. ICDE 1995: 391-400 - 1994
- [j4]Victor M. Markowitz:
Safe referential integrity and null constraint structures in relational databases. Inf. Syst. 19(4): 359-378 (1994) - [c18]Victor M. Markowitz, Arie Shoshani:
An Overview of the Lawrence Berkeley Laboratory Extended Entity-Relationship Database Tools. ER 1994: 333-350 - 1993
- [c17]Victor M. Markowitz, I-Min A. Chen:
Data Management Tools for Genomic Applications: A Progress Report. DEXA 1993: 529-540 - [c16]Victor M. Markowitz, Arie Shoshani:
Object Queries over Relational Databases: Language, Implementation, and Applications. ICDE 1993: 71-80 - 1992
- [j3]Victor M. Markowitz, Arie Shoshani:
Representing Extended Entity-Relationship Structures in Relational Databases: A Modular Approach. ACM Trans. Database Syst. 17(3): 423-464 (1992) - [c15]Victor M. Markowitz:
A Relation Merging Technique for Relational Databases. ICDE 1992: 428-437 - [c14]Victor M. Markowitz, Suzanna Lewis, John L. McCarthy, Frank Olken, Manfred Zorn:
Data Management for Genomic Mapping Applications: A Case Study. SSDBM 1992: 45-57 - 1991
- [c13]Victor M. Markowitz:
Problems Underlying the Use of Referential Integrity in Relational Database Management Systems. ICDE 1991 - [c12]Victor M. Markowitz:
An Architecture for Identifying Objects in Multidatabases. RIDE-IMS 1991: 294-301 - [c11]Victor M. Markowitz:
Safe Referential Integrity Structures in Relational Databases. VLDB 1991: 123-132 - 1990
- [j2]Victor M. Markowitz, Johann A. Makowsky:
Identifying Extended Entity-Relationship Object Structures in Relational Schemas. IEEE Trans. Software Eng. 16(8): 777-790 (1990) - [c10]Victor M. Markowitz:
Representing Processes in the Extended Entity-Relationship Model. ICDE 1990: 103-110 - [c9]Victor M. Markowitz:
Referential Integrity Revisited: An Object-Oriented Perspective. VLDB 1990: 578-589
1980 – 1989
- 1989
- [c8]Victor M. Markowitz, Arie Shoshani:
Name Assignment Techniques for Relational Schemas Representing Extended Entity-Relationship Schemas. ER 1989: 75-93 - [c7]Victor M. Markowitz, Arie Shoshani:
Abbreviated Query Interpretation in Extended Entity-Relationship Oriented Databases. ER 1989: 325-343 - [c6]Victor M. Markowitz, Arie Shoshani:
On the Correctness of Representing Extended Entity-Relationship Structures in the Relational Model. SIGMOD Conference 1989: 430-439 - 1988
- [c5]Victor M. Markowitz, Johann A. Makowsky:
Incremental Restructuring of Relational Schemas. ICDE 1988: 276-284 - 1987
- [b1]Victor M. Markowitz:
Entity-Relationship consistency for the relational model of databases. Technion - Israel Institute of Technology, Israel, 1987 - [c4]Victor M. Markowitz, Johann A. Makowsky:
Incremental Reorganization of Relational Databases. VLDB 1987: 127-135 - 1986
- [c3]Johann A. Makowsky, Victor M. Markowitz, Nimrod Rotics:
Entity-Relationship Consistency for Relational Schemas. ICDT 1986: 306-322 - 1984
- [j1]Victor M. Markowitz, Yoav Raz:
An entity-relationship algebra and its semantic description capabilities. J. Syst. Softw. 4(2-3): 147-162 (1984) - 1983
- [c2]Victor M. Markowitz, Yoav Raz:
A Modified Relational Algebra and its Use in an Entity-Relationship Environment. ER 1983: 315-328 - [c1]Victor M. Markowitz, Yoav Raz:
ERROL: An Entity-Relationship, Role Oriented, Query Language. ER 1983: 329-345
Coauthor Index
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