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Maria Jesus Martin
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- affiliation: European Bioinformatics Institute, Hinxton, UK
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2020 – today
- 2022
- [j43]Valérie de Crécy-Lagard
, Rocio Amorin de Hegedus
, Cecilia N. Arighi
, Jill Babor, Alex Bateman
, Ian Blaby
, Crysten Blaby-Haas, Alan Bridge
, Stephen K. Burley
, Stacey Cleveland, Lucy J. Colwell, Ana Conesa
, Christian Dallago
, Antoine Danchin
, Anita de Waard
, Adam Deutschbauer, Raquel Dias, Yousong Ding
, Gang Fang, Iddo Friedberg
, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M. Gyori
, Christopher S. Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D. Karp, Liudmyla Kondratova, Zhiyong Lu
, Aron Marchler-Bauer, Maria Jesus Martin
, Claire D. McWhite, Gaurav D. Moghe, Paul Monaghan, Anne Morgat, Christopher J. Mungall
, Darren A. Natale, William C. Nelson, Seán I. O'Donoghue, Christine A. Orengo, Katherine H. O'Toole, Predrag Radivojac
, Colbie Reed, Richard J. Roberts, Dmitri Rodionov, Irina A. Rodionova
, Jeffrey DePons, Lana Saleh, Gloria M. Sheynkman
, Françoise Thibaud-Nissen, Paul D. Thomas
, Peter Uetz, David Vallenet
, Erica Watson Carter, Peter Weigele
, Valerie Wood
, Elisha M. Wood-Charlson, Jin Xu
:
A roadmap for the functional annotation of protein families: a community perspective. Database J. Biol. Databases Curation 2022(2022) (2022) - [j42]Gökhan Özsari, Ahmet Süreyya Rifaioglu, Ahmet Atakan, Tunca Dogan
, Maria Jesus Martin
, Rengül Çetin-Atalay
, Volkan Atalay
:
SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins. Bioinform. 38(17): 4226-4229 (2022) - [j41]Gabriela Alejandra Merino
, Rabie Saidi, Diego H. Milone
, Georgina Stegmayer
, Maria Jesus Martin
:
Hierarchical deep learning for predicting GO annotations by integrating protein knowledge. Bioinform. 38(19): 4488-4496 (2022) - [j40]Noemi del-Toro
, Anjali Shrivastava
, Eliot Ragueneau
, Birgit Meldal
, Colin W. Combe, Elisabet Barrera
, Livia Perfetto
, Karyn How, Prashansa Ratan, Gautam Shirodkar, Odilia Lu
, Bálint Mészáros
, Xavier Watkins, Sangya Pundir
, Luana Licata
, Marta Iannuccelli, Matteo Pellegrini
, Maria Jesus Martin
, Simona Panni
, Margaret J. Duesbury, Sylvain D. Vallet
, Juri Rappsilber, Sylvie Ricard-Blum
, Gianni Cesareni, Lukasz Salwínski, Sandra E. Orchard
, Pablo Porras
, Kalpana Panneerselvam
, Henning Hermjakob
:
The IntAct database: efficient access to fine-grained molecular interaction data. Nucleic Acids Res. 50(D1): 648-653 (2022) - 2021
- [j39]Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida
, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman
, Jan Baumbach
, Niko Beerenwinkel, Christian Brandt
, Marco Cacciabue, Sara Chuguransky
, Oliver Drechsel, Robert D. Finn
, Adrian Fritz, Stephan Fuchs, Georges Hattab
, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari
, Max von Kleist
, Renó Kmiecinski, Denise Kühnert
, Gorka Lasso, Pieter Libin
, Markus List, Hannah F. Löchel
, Maria Jesus Martin
, Roman Martin
, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes
, Jaina Mistry
, Vincent Navratil
, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios
, Anton I. Petrov
, Guillermo Rangel-Pineros
, Nicole Redaschi
, Susanne Reimering, Knut Reinert
, Alejandro Reyes
, Lorna J. Richardson
, David L. Robertson, Sepideh Sadegh
, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams
, Manja Marz
:
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. 22(2): 642-663 (2021) - [j38]Alistair MacDougall, Vladimir Volynkin, Rabie Saidi, Diego Poggioli, Hermann Zellner, Emma Hatton-Ellis, Vishal Joshi, Claire O'Donovan
, Sandra E. Orchard
, Andrea H. Auchincloss, Delphine Baratin, Jerven T. Bolleman, Elisabeth Coudert, Edouard De Castro, Chantal Hulo, Patrick Masson
, Ivo Pedruzzi
, Catherine Rivoire, Cecilia N. Arighi, Qinghua Wang, Chuming Chen
, Hongzhan Huang, John Garavelli, C. R. Vinayaka, Lai-Su Yeh, Darren A. Natale, Kati Laiho, Maria Jesus Martin
, Alexandre Renaux
, Klemens Pichler:
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. Bioinform. 36(22-23): 5562 (2021) - [j37]Ahmet Süreyya Rifaioglu
, Rengül Çetin-Atalay
, Deniz Cansen Kahraman
, Tunca Dogan
, Maria Jesus Martin
, Volkan Atalay
:
MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery. Bioinform. 37(5): 693-704 (2021) - [j36]Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni
, Nomi L. Harris, Christopher J. Mungall, Siddartha Basu, Rex L. Chisholm
, Robert J. Dodson, Eric Hartline, Petra Fey, Paul D. Thomas, Laurent-Philippe Albou
, Dustin Ebert, Michael J. Kesling, Huaiyu Mi, Anushya Muruganujan, Xiaosong Huang, Tremayne Mushayahama, Sandra A. LaBonte
, Deborah A. Siegele, Giulia Antonazzo
, Helen Attrill
, Nick H. Brown, Phani V. Garapati
, Steven J. Marygold
, Vitor Trovisco, Gilberto dos Santos, Kathleen Falls, Christopher J. Tabone
, Pinglei Zhou, Joshua L. Goodman
, Victor B. Strelets, Jim Thurmond
, Penelope Garmiri
, Rizwan Ishtiaq, Milagros Rodríguez-López, Marcio Luis Acencio
, Martin Kuiper, Astrid Lægreid, Colin Logie
, Ruth C. Lovering
, Barbara Kramarz
, Shirin C. C. Saverimuttu, Sandra M. Pinheiro, Heather Gunn, Renzhi Su, Katherine E. Thurlow
, Marcus C. Chibucos
, Michelle G. Giglio, Suvarna Nadendla, James B. Munro
, Rebecca C. Jackson, Margaret J. Duesbury, Noemi del-Toro, Birgit H. M. Meldal
, Kalpana Paneerselvam, Livia Perfetto, Pablo Porras
, Sandra E. Orchard
, Anjali Shrivastava, Hsin-Yu Chang
, Robert D. Finn
, Alex L. Mitchell
, Neil D. Rawlings, Lorna J. Richardson
, Amaia Sangrador-Vegas, Judith A. Blake, Karen R. Christie, Mary E. Dolan, Harold J. Drabkin, David P. Hill, Li Ni, Dmitry M. Sitnikov, Midori A. Harris, Stephen G. Oliver, Kim Rutherford
, Valerie Wood, Jaqueline Hayles, Jürg Bähler, Elizabeth R. Bolton, Jeffrey DePons, Melinda R. Dwinell, G. Thomas Hayman, Mary L. Kaldunski, Anne E. Kwitek
, Stanley J. F. Laulederkind, Cody Plasterer, Marek Tutaj, Mahima Vedi
, Shur-Jen Wang, Peter D'Eustachio, Lisa Matthews, James P. Balhoff, Suzi A. Aleksander, Michael J. Alexander, J. Michael Cherry
, Stacia R. Engel
, Felix Gondwe, Kalpana Karra, Stuart R. Miyasato, Robert S. Nash, Matt Simison, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Marc Feuermann
, Pascale Gaudet
, Anne Morgat, Erica Bakker, Tanya Z. Berardini
, Leonore Reiser
, Shabari Subramaniam, Eva Huala
, Cecilia N. Arighi, Andrea H. Auchincloss, Kristian B. Axelsen
, Ghislaine Argoud-Puy, Alex Bateman
, Marie-Claude Blatter, Emmanuel Boutet, Emily Bowler
, Lionel Breuza, Alan Bridge
, Ramona Britto
, Hema Bye-A-Jee
, Cristina Casals-Casas, Elisabeth Coudert, Paul Denny
, Anne Estreicher, Maria Livia Famiglietti, George E. Georghiou
, Arnaud Gos, Nadine Gruaz-Gumowski, Emma Hatton-Ellis, Chantal Hulo, Alexandr Ignatchenko
, Florence Jungo, Kati Laiho, Philippe Le Mercier
, Damien Lieberherr, Antonia Lock
, Yvonne Lussi, Alistair MacDougall, Michele Magrane
, Maria Jesus Martin
, Patrick Masson
, Darren A. Natale, Nevila Hyka-Nouspikel, Ivo Pedruzzi
, Lucille Pourcel, Sylvain Poux, Sangya Pundir, Catherine Rivoire, Elena Speretta
, Shyamala Sundaram, Nidhi Tyagi, Kate Warner
, Rossana Zaru, Cathy H. Wu
, Alexander D. Diehl, Juancarlos Chan, Christian A. Grove, Raymond Y. N. Lee, Hans-Michael Müller, Daniela Raciti
, Kimberly Van Auken, Paul W. Sternberg, Matthew Berriman, Michael Paulini, Kevin L. Howe
, Sibyl Gao, Adam Wright, Lincoln Stein, Douglas G. Howe, Sabrina Toro
, Monte Westerfield, Pankaj Jaiswal, Laurel Cooper
, Justin Elser:
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49(Database-Issue): D325-D334 (2021) - [j35]Alex Bateman
, Maria Jesus Martin
, Sandra E. Orchard
, Michele Magrane
, Rahat Agivetova, Shadab Ahmad, Emanuele Alpi
, Emily H. Bowler-Barnett
, Ramona Britto
, Borisas Bursteinas, Hema Bye-A-Jee
, Ray Coetzee, Austra Cukura, Alan W. Sousa da Silva, Paul Denny
, Tunca Dogan
, Thankgod Ebenezer, Jun Fan, Leyla Jael García Castro
, Penelope Garmiri
, George E. Georghiou
, Leonardo Gonzales, Emma Hatton-Ellis
, Abdulrahman Hussein
, Alexandr Ignatchenko
, Giuseppe Insana
, Rizwan Ishtiaq, Petteri Jokinen, Vishal Joshi, Dushyanth Jyothi
, Antonia Lock
, Rodrigo Lopez
, Aurelien Luciani
, Jie Luo, Yvonne Lussi
, Alistair MacDougall, Fábio Madeira
, Mahdi Mahmoudy, Manuela Menchi
, Alok Mishra, Katie Moulang, Andrew Nightingale, Carla Susana Oliveira, Sangya Pundir, Guoying Qi
, Shriya Raj
, Daniel Rice, Milagros Rodríguez-López, Rabie Saidi, Joseph Sampson, Tony Sawford, Elena Speretta
, Edward Turner
, Nidhi Tyagi, Preethi Vasudev, Vladimir Volynkin, Kate Warner
, Xavier Watkins, Rossana Zaru, Hermann Zellner, Alan Bridge
, Sylvain Poux, Nicole Redaschi
, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen
, Parit Bansal
, Delphine Baratin, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet
, Lionel Breuza, Cristina Casals-Casas, Edouard De Castro, Kamal Chikh Echioukh, Elisabeth Coudert, Béatrice A. Cuche, Mikael Doche, Dolnide Dornevil, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann
, Elisabeth Gasteiger, Sebastien Gehant, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Guillaume Keller, Arnaud Kerhornou, Vicente Lara, Philippe Le Mercier
, Damien Lieberherr, Thierry Lombardot, Xavier Martin, Patrick Masson
, Anne Morgat, Teresa Batista Neto, Salvo Paesano, Ivo Pedruzzi
, Sandrine Pilbout, Lucille Pourcel, Monica Pozzato, Manuela Pruess, Catherine Rivoire
, Christian J. A. Sigrist, Karin Sonesson, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Cathy H. Wu
, Cecilia N. Arighi, Leslie Arminski, Chuming Chen
, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Peter B. McGarvey
, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang, Lai-Su Yeh, Jian Zhang, Patrick Ruch
, Douglas Teodoro
:
UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res. 49(Database-Issue): D480-D489 (2021) - [j34]Tunca Dogan
, Ece Akhan Güzelcan
, Marcus Baumann
, Altay Koyas
, Heval Atas
, Ian R. Baxendale
, Maria Jesus Martin
, Rengül Çetin-Atalay
:
Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases. PLoS Comput. Biol. 17(11) (2021) - 2020
- [j33]Robel Y. Kahsay, Jeet Vora, Rahi Navelkar
, Reza Mousavi, Brian C. Fochtman, Xavier Holmes, Nagarajan Pattabiraman, René Ranzinger, Rupali Mahadik, Tatiana Williamson, Sujeet Kulkarni, Gaurav Agarwal, Maria Jesus Martin
, Preethi Vasudev, Leyla J. García
, Nathan Edwards, Wenjin Zhang, Darren A. Natale, Karen Ross, Kiyoko F. Aoki-Kinoshita
, Matthew P. Campbell
, William S. York, Raja Mazumder
:
GlyGen data model and processing workflow. Bioinform. 36(12): 3941-3943 (2020) - [j32]Adrian M. Altenhoff
, Javier Garrayo-Ventas
, Salvatore Cosentino
, David Emms
, Natasha M. Glover
, Ana Hernández-Plaza, Yannis Nevers
, Vicky Sundesha
, Damian Szklarczyk, José María Fernández
, Laia Codó
, The Quest for Orthologs Consortium, Josep Lluis Gelpí
, Jaime Huerta-Cepas
, Wataru Iwasaki
, Steven Kelly
, Odile Lecompte
, Matthieu Muffato
, Maria Jesus Martin
, Salvador Capella-Gutiérrez
, Paul D. Thomas
, Erik L. L. Sonnhammer
, Christophe Dessimoz
:
The Quest for Orthologs benchmark service and consensus calls in 2020. Nucleic Acids Res. 48(Webserver-Issue): W538-W545 (2020)
2010 – 2019
- 2019
- [j31]Ahmet Süreyya Rifaioglu
, Heval Atas
, Maria Jesus Martin
, Rengül Çetin-Atalay
, Volkan Atalay
, Tunca Dogan
:
Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases. Briefings Bioinform. 20(5): 1878-1912 (2019) - [j30]Jose M. Dana, Aleksandras Gutmanas
, Nidhi Tyagi, Guoying Qi
, Claire O'Donovan
, Maria Jesus Martin
, Sameer Velankar
:
SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins. Nucleic Acids Res. 47(Database-Issue): D482-D489 (2019) - 2018
- [j29]Alperen Dalkiran
, Ahmet Süreyya Rifaioglu
, Maria Jesus Martin
, Rengül Çetin-Atalay
, Volkan Atalay
, Tunca Dogan
:
ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature. BMC Bioinform. 19(1): 334:1-334:13 (2018) - 2017
- [j28]Xavier Watkins
, Leyla J. García
, Sangya Pundir
, Maria Jesus Martin
, The UniProt Consortium:
ProtVista: visualization of protein sequence annotations. Bioinform. 33(13): 2040-2041 (2017) - [j27]Milot Mirdita
, Lars von den Driesch, Clovis Galiez, Maria Jesus Martin, Johannes Söding, Martin Steinegger
:
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Res. 45(Database-Issue): D170-D176 (2017) - [j26]Gautier Koscielny, Peter An, Denise Carvalho-Silva, Jennifer A. Cham
, Luca Fumis
, Rippa Gasparyan, Samiul Hasan, Nikiforos Karamanis
, Michael Maguire, Eliseo Papa
, Andrea Pierleoni, Miguel Pignatelli
, Theo Platt, Francis Rowland
, Priyanka Wankar, A. Patrícia Bento, Tony Burdett
, Antonio Fabregat
, Simon A. Forbes, Anna Gaulton, Cristina Yenyxe González
, Henning Hermjakob
, Anne Hersey, Steven Jupe
, Senay Kafkas, Maria Keays
, Catherine Leroy, Francisco-Javier Lopez, María P. Magariños
, James Malone, Johanna R. McEntyre, Alfonso Muñoz-Pomer Fuentes
, Claire O'Donovan
, Irene Papatheodorou
, Helen E. Parkinson
, Barbara Palka
, Justin E. Paschall, Robert Petryszak
, Naruemon Pratanwanich
, Sirarat Sarntivijai
, Gary Saunders
, Konstantinos Sidiropoulos
, Thomas Smith, Zbyslaw Sondka, Oliver Stegle, Y. Amy Tang
, Edward Turner, Brendan W. Vaughan, Olga Vrousgou, Xavier Watkins, Maria Jesus Martin, Philippe Sanseau, Jessica Vamathevan, Ewan Birney, Jeffrey Barrett, Ian Dunham:
Open Targets: a platform for therapeutic target identification and validation. Nucleic Acids Res. 45(Database-Issue): D985-D994 (2017) - [j25]Andrew Nightingale, Ricardo Antunes, Emanuele Alpi
, Borisas Bursteinas
, Leonardo Gonzales, Wudong Liu, Jie Luo
, Guoying Qi
, Edd Turner, Maria Jesus Martin
:
The Proteins API: accessing key integrated protein and genome information. Nucleic Acids Res. 45(Webserver-Issue): W539-W544 (2017) - 2016
- [j24]Borisas Bursteinas, Ramona Britto
, Benoit Bely
, Andrea H. Auchincloss, Catherine Rivoire
, Nicole Redaschi
, Claire O'Donovan
, Maria Jesus Martin
:
Minimizing proteome redundancy in the UniProt Knowledgebase. Database J. Biol. Databases Curation 2016 (2016) - [j23]Sefa Kiliç, Dinara M. Sagitova, Shoshannah Wolfish, Benoit Bely
, Mélanie Courtot
, Stacy Ciufo, Tatiana A. Tatusova, Claire O'Donovan
, Marcus C. Chibucos
, Maria Jesus Martin
, Ivan Erill
:
From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF. Database J. Biol. Databases Curation 2016 (2016) - [j22]Tunca Dogan
, Alistair MacDougall
, Rabie Saidi
, Diego Poggioli, Alex Bateman, Claire O'Donovan
, Maria Jesus Martin
:
UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB. Bioinform. 32(15): 2264-2271 (2016) - [j21]Rebecca E. Foulger
, Paul Denny
, John Hardy
, Maria Jesus Martin, Tony Sawford, Ruth C. Lovering
:
Using the Gene Ontology to Annotate Key Players in Parkinson's Disease. Neuroinformatics 14(3): 297-304 (2016) - [c6]Leyla J. García, Leonardo Gonzales, Maria Jesus Martin:
A Graph-based Taxonomy RESTful Data Service. SWAT4LS 2016 - 2015
- [j20]Rachael P. Huntley
, Tony Sawford, Prudence Mutowo-Meullenet
, Aleksandra Shypitsyna
, Carlos Bonilla, Maria Jesus Martin
, Claire O'Donovan
:
The GOA database: Gene Ontology annotation updates for 2015. Nucleic Acids Res. 43(Database-Issue): 1057-1063 (2015) - [c5]Mélanie Courtot, Aleksandra Shypitsyna, Elena Speretta, Alexander Holmes, Tony Sawford, Tony Wardell, Maria Jesus Martin, Claire O'Donovan:
UniProt-GOA: A Central Resource for Data Integration and GO Annotation. SWAT4LS 2015: 227-228 - 2014
- [j19]Simon Jupp
, James Malone, Jerven T. Bolleman
, Marco Brandizi, Mark Davies, Leyla J. García
, Anna Gaulton
, Sebastien Gehant
, Camille Laibe
, Nicole Redaschi
, Sarala M. Wimalaratne
, Maria Jesus Martin
, Nicolas Le Novère, Helen E. Parkinson, Ewan Birney, Andrew M. Jenkinson
:
The EBI RDF platform: linked open data for the life sciences. Bioinform. 30(9): 1338-1339 (2014) - [j18]Erik L. L. Sonnhammer
, Toni Gabaldón
, Alan W. Sousa da Silva
, Maria Jesus Martin
, Marc Robinson-Rechavi
, Brigitte Boeckmann, Paul D. Thomas
, Christophe Dessimoz
, The Quest for Orthologs Consortium:
Big data and other challenges in the quest for orthologs. Bioinform. 30(21): 2993-2998 (2014) - 2013
- [j17]Prudence Mutowo-Meullenet
, Rachael P. Huntley
, Emily C. Dimmer, Yasmin Alam-Faruque, Tony Sawford, Maria Jesus Martin
, Claire O'Donovan
, Rolf Apweiler
:
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans. Database J. Biol. Databases Curation 2013 (2013) - [j16]John Gómez, Leyla J. García
, Gustavo A. Salazar
, Jose M. Villaveces, Swanand P. Gore
, Alexander García Castro
, Maria Jesus Martin
, Guillaume Launay
, Rafael Alcántara
, Noemi del-Toro
, Marine Dumousseau, Sandra E. Orchard
, Sameer Velankar
, Henning Hermjakob
, Chenggong Zong, Peipei Ping
, Manuel Corpas
, Rafael C. Jiménez
:
BioJS: an open source JavaScript framework for biological data visualization. Bioinform. 29(8): 1103-1104 (2013) - [j15]Sameer Velankar
, Jose M. Dana
, Julius O. B. Jacobsen
, Glen van Ginkel
, Paul J. Gane
, Jie Luo, Thomas J. Oldfield, Claire O'Donovan
, Maria Jesus Martin
, Gerard J. Kleywegt
:
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource. Nucleic Acids Res. 41(Database-Issue): 483-489 (2013) - [j14]Rafael Alcántara
, Joseph Onwubiko
, Hong Cao, Paula de Matos, Jennifer A. Cham
, Julius O. B. Jacobsen
, Gemma L. Holliday
, Julia D. Fischer, Syed Asad Rahman
, Bijay Jassal
, Mickael Goujon, Francis Rowland
, Sameer Velankar
, Rodrigo Lopez
, John P. Overington
, Gerard J. Kleywegt
, Henning Hermjakob
, Claire O'Donovan
, Maria Jesus Martin
, Janet M. Thornton
, Christoph Steinbeck
:
The EBI enzyme portal. Nucleic Acids Res. 41(Database-Issue): 773-780 (2013) - 2012
- [j13]Ruth Y. Eberhardt
, Daniel H. Haft, Marco Punta
, Maria Jesus Martin
, Claire O'Donovan
, Alex Bateman
:
AntiFam: a tool to help identify spurious ORFs in protein annotation. Database J. Biol. Databases Curation 2012 (2012) - [j12]Pascale Gaudet, Cecilia N. Arighi
, Frederic B. Bastian
, Alex Bateman
, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio
, Robert D. Finn
, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin
, Ilene Karsch-Mizrachi
, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan
, B. F. Francis Ouellette
, Kim D. Pruitt
, Marc Robinson-Rechavi
, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu
, Jasmine Young, Raja Mazumder
:
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database J. Biol. Databases Curation 2012 (2012) - [j11]Emily C. Dimmer, Rachael P. Huntley
, Yasmin Alam-Faruque, Tony Sawford, Claire O'Donovan
, Maria Jesus Martin
, Benoit Bely
, Paul Browne, Wei Mun Chan, Ruth Y. Eberhardt
, Michael Gardner, Kati Laiho, Duncan Legge, Michele Magrane, Klemens Pichler
, Diego Poggioli, Harminder Sehra, Andrea H. Auchincloss, Kristian B. Axelsen, Marie-Claude Blatter, Emmanuel Boutet, Silvia Braconi-Quintaje, Lionel Breuza
, Alan Bridge
, Elisabeth Coudert
, Anne Estreicher
, Maria Livia Famiglietti, Serenella Ferro-Rojas, Marc Feuermann, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo
, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Patrick Masson
, Madelaine Moinat, Ivo Pedruzzi
, Sylvain Poux
, Catherine Rivoire
, Bernd Roechert, Michel Schneider
, Andre Stutz, Shyamala Sundaram, Michael Tognolli
, Lydie Bougueleret, Ghislaine Argoud-Puy, Isabelle Cusin, Paula Duek-Roggli, Ioannis Xenarios
, Rolf Apweiler
:
The UniProt-GO Annotation database in 2011. Nucleic Acids Res. 40(Database-Issue): 565-570 (2012) - 2011
- [j10]Jose M. Villaveces, Rafael C. Jiménez
, Leyla J. García
, Gustavo A. Salazar
, Bernat Gel
, Nicola J. Mulder
, Maria Jesus Martin
, Alexander García Castro, Henning Hermjakob
:
Dasty3, a WEB framework for DAS. Bioinform. 27(18): 2616-2617 (2011) - [c4]Samuel Patient, Maria Jesus Martin:
Annotating UniProt Metagenomic and Environmental Sequences in UniMES. BIOINFORMATICS 2011: 367-368
2000 – 2009
- 2009
- [j9]Eric Jain, Amos Bairoch
, Severine Duvaud, Isabelle Phan
, Nicole Redaschi
, Baris E. Suzek
, Maria Jesus Martin
, Peter B. McGarvey
, Elisabeth Gasteiger
:
Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinform. 10 (2009) - 2008
- [j8]Samuel Patient, Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus Martin
, Rolf Apweiler
:
UniProtJAPI: a remote API for accessing UniProt data. Bioinform. 24(10): 1321-1322 (2008) - 2006
- [j7]Cathy H. Wu
, Rolf Apweiler
, Amos Bairoch
, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger
, Hongzhan Huang, Rodrigo Lopez
, Michele Magrane
, Maria Jesus Martin
, Raja Mazumder
, Claire O'Donovan
, Nicole Redaschi
, Baris E. Suzek
:
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34(Database-Issue): 187-191 (2006) - 2005
- [j6]Amos Bairoch
, Rolf Apweiler
, Cathy H. Wu
, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger
, Hongzhan Huang, Rodrigo Lopez
, Michele Magrane
, Maria Jesus Martin
, Darren A. Natale, Claire O'Donovan
, Nicole Redaschi
, Lai-Su L. Yeh:
The Universal Protein Resource (UniProt). Nucleic Acids Res. 33(Database-Issue): 154-159 (2005) - 2004
- [j5]Rolf Apweiler
, Amos Bairoch
, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger
, Hongzhan Huang, Rodrigo Lopez
, Michele Magrane
, Maria Jesus Martin
, Darren A. Natale, Claire O'Donovan, Nicole Redaschi
, Lai-Su L. Yeh:
UniProt: the Universal Protein knowledgebase. Nucleic Acids Res. 32(Database-Issue): 115-119 (2004) - 2003
- [j4]Catherine Brooksbank
, Evelyn Camon, Midori A. Harris, Michele Magrane
, Maria Jesus Martin
, Nicola J. Mulder
, Claire O'Donovan
, Helen E. Parkinson
, Mary Ann Tuli
, Rolf Apweiler
, Ewan Birney
, Alvis Brazma
, Kim Henrick, Rodrigo Lopez
, Guenter Stoesser, Peter Stoehr
, Graham Cameron:
The European Bioinformatics Institute's data resources. Nucleic Acids Res. 31(1): 43-50 (2003) - [j3]Brigitte Boeckmann, Amos Bairoch
, Rolf Apweiler
, Marie-Claude Blatter, Anne Estreicher
, Elisabeth Gasteiger
, Maria Jesus Martin
, Karine Michoud, Claire O'Donovan
, Isabelle Phan, Sandrine Pilbout, Michel Schneider:
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31(1): 365-370 (2003) - 2002
- [j2]Claire O'Donovan
, Maria Jesus Martin
, Alexandre Gattiker, Elisabeth Gasteiger
, Amos Bairoch
, Rolf Apweiler
:
High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL. Briefings Bioinform. 3(3): 275-284 (2002)
1990 – 1999
- 1999
- [j1]Claire O'Donovan
, Maria Jesus Martin
, Eric Glémet, Jean-Jacques Codani, Rolf Apweiler
:
Removing redundancy in SWISS-PROT and TrEMBL. Bioinform. 15(3): 258-259 (1999) - 1998
- [c3]Henning Hermjakob, Claire O'Donovan, Maria Jesus Martin, Fiona Lang, Rolf Apweiler:
SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world. German Conference on Bioinformatics 1998 - [c2]Claire O'Donovan, Maria Jesus Martin, Eric Glémet, Jean-Jacques Codani, Rolf Apweiler:
Removing Redundancy in SWISS-PROT and TrEMBL. German Conference on Bioinformatics 1998 - 1997
- [c1]Rolf Apweiler, Alain Gateau, Sergio Contrino, Maria Jesus Martin, Vivien Junker, Claire O'Donovan, Fiona Lang, Nicoletta Mitaritonna, Stephanie Kappus, Amos Bairoch:
Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL. ISMB 1997: 33-43