
Pankaj Jaiswal
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2020 – today
- 2020
- [c18]Laurel Cooper, Marie-Angélique Laporte, Justin Elser, Victoria Carollo Blake, Taner Z. Sen, Chris Mungall, Elizabeth Arnaud, Pankaj Jaiswal:
The Plant Trait Ontology Links Wheat Traits for Crop Improvement and Genomics (short paper). ICBO/ODLS 2020: 1-2
2010 – 2019
- 2019
- [j18]Sushma Naithani, Parul Gupta, Justin Preece, Priyanka Garg, Valerie Fraser
, Lillian K. Padgitt-Cobb, Matthew Martin, Kelly Vining, Pankaj Jaiswal:
Involving community in genes and pathway curation. Database J. Biol. Databases Curation 2019: bay146 (2019) - [j17]Parul Gupta
, Sumedha Chauhan, Pankaj Jaiswal:
Classification of Smart City Research - a Descriptive Literature Review and Future Research Agenda. Inf. Syst. Frontiers 21(3): 661-685 (2019) - [c17]Amit Gupta, Weijia Xu, Pankaj Jaiswal
, Crispin Taylor, Jennifer Regala:
Extracting Domain Information using Deep Learning. PEARC 2019: 67:1-67:7 - 2018
- [j16]Lisa C. Harper, Jacqueline D. Campbell
, Ethalinda K. S. Cannon
, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud
, Tanya Z. Berardini
, Clayton L. Birkett, Steve Cannon, James Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik
, Andrew Farmer, Stephen P. Ficklin, David Grant, Emily S. Grau, Nic Herndon
, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte
, Pierre Larmande
, Gerard R. Lazo
, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy
, Leonore Reiser
, Lacey-Anne Sanderson, Taner Z. Sen
, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main:
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database J. Biol. Databases Curation 2018: bay088 (2018) - [j15]Laurel Cooper, Austin Meier, Marie-Angélique Laporte
, Justin Elser, Chris Mungall, Brandon T. Sinn
, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios V. Gkoutos
, John H. Doonan
, Dennis W. Stevenson, Elizabeth Arnaud
, Pankaj Jaiswal
:
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Res. 46(Database-Issue): D1168-D1180 (2018) - [j14]Marcela K. Tello-Ruiz, Sushma Naithani
, Joshua C. Stein, Parul Gupta, Michael Campbell, Andrew Olson, Sharon Wei, Justin Preece, Matthew J. Geniza, Yinping Jiao, Young Koung Lee, Bo Wang
, Joseph Mulvaney, Kapeel Chougule, Justin Elser, Noor Al-Bader, Sunita Kumari, James Thomason, Vivek Kumar, Daniel M. Bolser
, Guy Naamati
, Electra Tapanari, Nuno A. Fonseca
, Laura Huerta
, Haider Iqbal
, Maria Keays
, Alfonso Muñoz-Pomer Fuentes, Y. Amy Tang
, Antonio Fabregat
, Peter D'Eustachio
, Joel Weiser, Lincoln D. Stein, Robert Petryszak
, Irene Papatheodorou
, Paul J. Kersey
, Patti Lockhart
, Crispin Taylor, Pankaj Jaiswal
, Doreen Ware:
Gramene 2018: unifying comparative genomics and pathway resources for plant research. Nucleic Acids Res. 46(Database-Issue): D1181-D1189 (2018) - [j13]Irene Papatheodorou
, Nuno A. Fonseca
, Maria Keays
, Y. Amy Tang
, Elisabet Barrera
, Wojciech Bazant, Melissa L. Burke
, Anja Füllgrabe
, Alfonso Muñoz-Pomer Fuentes, Nancy George, Laura Huerta
, Satu Koskinen, Suhaib Mohammed
, Matthew J. Geniza, Justin Preece, Pankaj Jaiswal
, Andrew Jarnuczak
, Wolfgang Huber
, Oliver Stegle
, Juan Antonio Vizcaíno
, Alvis Brazma
, Robert Petryszak
:
Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Res. 46(Database-Issue): D246-D251 (2018) - [c16]Lorena Endara, J. Gordon Burleigh, Laurel Cooper, Pankaj Jaiswal, Marie-Angélique Laporte, Hong Cui:
A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants. ICBO 2018 - [c15]Amit Gupta, Weijia Xu, Pankaj Jaiswal, Crispin Taylor, Jennifer Regala:
Domain Informational Vocabulary Extraction Experiences with Publication Pipeline Integration and Ontology Curation. ICBO 2018 - [c14]Austin Meier, Marie-Angélique Laporte, Justin Elser, Laurel Cooper, Justin Preece, Pankaj Jaiswal, Jorrit H. Poelen:
OOPS: The Ontology of Plant Stress, A Semi-Automated Standardization Methodology. ICBO 2018 - [c13]Dimitrios Trigkakis, Justin Preece, Austin Meier, Justin Elser, Kristian Kvilekval, Dmitry Fedorov, B. S. Manjunath, Pankaj Jaiswal, Sinisa Todorovic:
Planteome & BisQue: Automating Image Annotation with Ontologies using Deep-Learning Networks. ICBO 2018 - [p1]Ian Braun, James P. Balhoff, Tanya Z. Berardini, Laurel Cooper, Georgios V. Gkoutos, Lisa C. Harper, Eva Huala, Pankaj Jaiswal, Toni Kazic, Hilmar Lapp
, James A. Macklin, Chelsea D. Specht, Todd J. Vision, Ramona L. Walls, Carolyn J. Lawrence-Dill:
'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life. Application of Semantic Technology in Biodiversity Science 2018: 187-205 - [e2]Pankaj Jaiswal, Laurel Cooper, Melissa A. Haendel, Christopher J. Mungall:
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), Corvallis, Oregon, USA, August 7-10, 2018. CEUR Workshop Proceedings 2285, CEUR-WS.org 2018 [contents] - 2017
- [j12]Sushma Naithani
, Justin Preece, Peter D'Eustachio
, Parul Gupta, Vindhya Amarasinghe, Palitha Dharmawardhana, Guanming Wu, Antonio Fabregat
, Justin Elser, Joel Weiser, Maria Keays
, Alfonso Muñoz-Pomer Fuentes
, Robert Petryszak
, Lincoln D. Stein, Doreen Ware, Pankaj Jaiswal
:
Plant Reactome: a resource for plant pathways and comparative analysis. Nucleic Acids Res. 45(Database-Issue): D1029-D1039 (2017) - [c12]Botong Qu, Prashant Kumar, Eugene Zhang, Pankaj Jaiswal, Laurel Cooper, Justin Elser, Yue Zhang:
Interactive design and visualization of N-ary relationships. SIGGRAPH Asia Symposium on Visualization 2017: 15:1-15:8 - 2016
- [j11]Robert Petryszak, Maria Keays
, Y. Amy Tang
, Nuno A. Fonseca
, Elisabet Barrera
, Tony Burdett
, Anja Füllgrabe
, Alfonso Muñoz-Pomer Fuentes
, Simon Jupp
, Satu Koskinen
, Oliver Mannion, Laura Huerta
, Karine Megy
, Catherine Snow, Eleanor Williams, Mitra Barzine, Emma Hastings
, Hendrik Weisser, James C. Wright
, Pankaj Jaiswal, Wolfgang Huber
, Jyoti Choudhary
, Helen E. Parkinson
, Alvis Brazma:
Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Res. 44(Database-Issue): 746-752 (2016) - [j10]Marcela K. Tello-Ruiz, Joshua C. Stein, Sharon Wei, Justin Preece, Andrew Olson, Sushma Naithani
, Vindhya Amarasinghe, Palitha Dharmawardhana, Yinping Jiao, Joseph Mulvaney, Sunita Kumari, Kapeel Chougule, Justin Elser, Bo Wang
, James Thomason, Daniel M. Bolser, Arnaud Kerhornou, Brandon Walts, Nuno A. Fonseca
, Laura Huerta
, Maria Keays
, Y. Amy Tang
, Helen E. Parkinson
, Antonio Fabregat
, Sheldon J. McKay, Joel Weiser, Peter D'Eustachio
, Lincoln Stein, Robert Petryszak, Paul J. Kersey
, Pankaj Jaiswal, Doreen Ware:
Gramene 2016: comparative plant genomics and pathway resources. Nucleic Acids Res. 44(Database-Issue): 1133-1140 (2016) - [c11]Laurel Cooper, Austin Meier, Justin Elser, Justin Preece, Xu Xu, Ryan Kitchen, Botong Qu, Eugene Zhang, Sinisa Todorovic, Pankaj Jaiswal, Marie-Angélique Laporte, Elizabeth Arnaud, Seth Carbon, Chris Mungall, Barry Smith, Georgios V. Gkoutos, John H. Doonan:
The Planteome Project. ICBO/BioCreative 2016 - [c10]Marie-Angélique Laporte, Léo Valette, Laurel Cooper, Chris Mungall, Austin Meier, Pankaj Jaiswal, Elizabeth Arnaud:
Comparison of Ontology Mapping Techniques to Map Plant Trait Ontologies. ICBO/BioCreative 2016 - [c9]Austin Meier, Laurel Cooper, Justin Elser, Pankaj Jaiswal, Marie-Angélique Laporte:
Annotating Germplasm to Planteome Reference Ontologies. ICBO/BioCreative 2016 - [c8]Justin Preece, Justin Elser, Pankaj Jaiswal, Kristian Kvilekval, Dmitry Fedorov, B. S. Manjunath, Ryan Kitchen, Xu Xu, Dmitrios Trigkakis, Sinisa Todorovic, Seth Carbon:
Plant Image Segmentation and Annotation with Ontologies in BisQue. ICBO/BioCreative 2016 - [c7]Botong Qu, Jaden Diefenbaugh, Eugene Zhang, Justin Elser, Pankaj Jaiswal, Seth Carbon, Christopher J. Mungall:
Planteome Gene Annotation Enrichment Analysis. ICBO/BioCreative 2016 - [c6]Weijia Xu, Amit Gupta, Pankaj Jaiswal, Crispin Taylor, Patti Lockhart:
Enhancing Information Accessibility of Publications with Text Mining and Ontology. ICBO/BioCreative 2016 - [c5]Weijia Xu, Amit Gupta, Pankaj Jaiswal, Crispin Taylor, Patti Lockhart:
A Web Application for Extracting Key Domain Information for Scientific Publications Using Ontology. ICBO/BioCreative 2016 - [e1]Pankaj Jaiswal, Robert Hoehndorf, Cecilia N. Arighi, Austin Meier:
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016. CEUR Workshop Proceedings 1747, CEUR-WS.org 2016 [contents] - 2014
- [j9]Nikhil Lingutla, Justin Preece, Sinisa Todorovic, Laurel Cooper, Laura Moore, Pankaj Jaiswal:
AISO: Annotation of Image Segments with Ontologies. J. Biomed. Semant. 5: 50 (2014) - [j8]Marcela K. Monaco, Joshua C. Stein, Sushma Naithani
, Sharon Wei, Palitha Dharmawardhana, Sunita Kumari, Vindhya Amarasinghe, Ken Youens-Clark
, James Thomason, Justin Preece, Shiran Pasternak, Andrew Olson, Yinping Jiao, Zhenyuan Lu, Daniel M. Bolser
, Arnaud Kerhornou
, Daniel M. Staines
, Brandon Walts, Guanming Wu, Peter D'Eustachio
, Robin Haw, David Croft, Paul J. Kersey
, Lincoln Stein, Pankaj Jaiswal, Doreen Ware:
Gramene 2013: comparative plant genomics resources. Nucleic Acids Res. 42(Database-Issue): 1193-1199 (2014) - 2012
- [c4]Elizabeth Arnaud, Laurel Cooper, Rosemary Shrestha, Naama Menda, Rex T. Nelson, Luca Matteis, Milko Skofic, Ruth Bastow, Pankaj Jaiswal, Lukas A. Mueller, Graham McLaren:
Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotypes. KEOD 2012: 220-225 - [c3]Ramona L. Walls, Hong Cui, James A. Macklin, Chris Mungall, Laurel Cooper, Dennis W. Stevenson, Pankaj Jaiswal:
Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources. ICBO 2012 - [c2]Ramona L. Walls, Barry Smith, Justin Elser, Albert Goldfain, Dennis W. Stevenson, Pankaj Jaiswal:
A plant disease extension of the Infectious Disease Ontology. ICBO 2012 - 2011
- [j7]Shuchi Smita, Sangram Keshari Lenka, Amit Katiyar, Pankaj Jaiswal, Justin Preece, Kailash Chander Bansal:
QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice. Database J. Biol. Databases Curation 2011 (2011) - [j6]Ken Youens-Clark
, Edward S. Buckler
, Terry M. Casstevens
, Charles Chen, Genevieve DeClerck, Paul S. Derwent, Palitha Dharmawardhana, Pankaj Jaiswal, Paul J. Kersey
, A. S. Karthikeyan, Jerry Lu, Susan McCouch, Liya Ren, William Spooner, Joshua C. Stein, Jim Thomason, Sharon Wei, Doreen Ware:
Gramene database in 2010: updates and extensions. Nucleic Acids Res. 39(Database-Issue): 1085-1094 (2011) - [c1]Justin Preece, Justin Elser, Pankaj Jaiswal:
Planteome annotation wiki: a semantic application for the community curation of plant genotypes and phenotypes. SWAT4LS 2011: 96-97
2000 – 2009
- 2009
- [j5]Junjian Ni, Anuradha Pujar, Ken Youens-Clark
, Immanuel Yap, Pankaj Jaiswal, Isaak Y. Tecle, Chih-Wei Tung
, Liya Ren, William Spooner, Xuehong Wei, Shuly Avraham, Doreen Ware, Lincoln Stein, Susan McCouch:
Gramene QTL database: development, content and applications. Database J. Biol. Databases Curation 2009 (2009) - 2008
- [j4]Shulamit Avraham, Chih-Wei Tung
, Katica Ilic, Pankaj Jaiswal, Elizabeth A. Kellogg
, Susan McCouch, Anuradha Pujar, Leonore Reiser
, Seung Yon Rhee, Martin M. Sachs, Mary L. Schaeffer, Lincoln Stein, Peter F. Stevens, Leszek Vincent, Felipe Zapata
, Doreen Ware:
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Res. 36(Database-Issue): 449-454 (2008) - [j3]Chengzhi Liang, Pankaj Jaiswal, Claire Hebbard, Shuly Avraham, Edward S. Buckler
, Terry M. Casstevens
, Bonnie L. Hurwitz, Susan McCouch, Junjian Ni, Anuradha Pujar, Dean Ravenscroft, Liya Ren, William Spooner, Isaak Y. Tecle, Jim Thomason, Chih-Wei Tung
, Xuehong Wei, Immanuel Yap, Ken Youens-Clark
, Doreen Ware, Lincoln Stein:
Gramene: a growing plant comparative genomics resource. Nucleic Acids Res. 36(Database-Issue): 947-953 (2008) - 2006
- [j2]Pankaj Jaiswal, Junjian Ni, Immanuel Yap, Doreen Ware, William Spooner, Ken Youens-Clark, Liya Ren, Chengzhi Liang, Wei Zhao, Kiran Ratnapu, Benjamin Faga, Payan Canaran, Molly Fogleman, Claire Hebbard, Shuly Avraham, Steven Schmidt, Terry M. Casstevens, Edward S. Buckler
, Lincoln Stein, Susan McCouch:
Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res. 34(Database-Issue): 717-723 (2006) - 2002
- [j1]Doreen Ware, Pankaj Jaiswal, Junjian Ni, Xiaokang Pan, Kuan Y. Chang, Kenneth Clark, Leonid Teytelman, Steven Schmidt, Wei Zhao, Samuel Cartinhour, Susan McCouch, Lincoln Stein:
Gramene: a resource for comparative grass genomics. Nucleic Acids Res. 30(1): 103-105 (2002)
Coauthor Index

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