
Silvio C. E. Tosatto
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2020 – today
- 2020
- [j46]Pablo Mier
, Lisanna Paladin
, Stella Tamana
, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó
, Zoltán Gáspári, Christos A. Ouzounis
, Vasilis J. Promponas
, Andrey V. Kajava, John M. Hancock
, Silvio C. E. Tosatto
, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro
:
Disentangling the complexity of low complexity proteins. Briefings Bioinform. 21(2): 458-472 (2020) - [j45]Lisanna Paladin
, Mathieu Schaeffer, Pascale Gaudet
, Monique Zahn-Zabal
, Pierre-André Michel, Damiano Piovesan, Silvio C. E. Tosatto
, Amos Bairoch
:
The Feature-Viewer: a visualization tool for positional annotations on a sequence. Bioinform. 36(10): 3244-3245 (2020) - [j44]Tadeo E. Saldaño, Victor M. Freixas, Silvio C. E. Tosatto, Gustavo D. Parisi, Sebastian Fernandez Alberti:
Exploring Conformational Space with Thermal Fluctuations Obtained by Normal-Mode Analysis. J. Chem. Inf. Model. 60(6): 3068-3080 (2020) - [j43]Damiano Piovesan
, András Hatos
, Giovanni Minervini
, Federica Quaglia, Alexander Miguel Monzon
, Silvio C. E. Tosatto
:
Assessing predictors for new post translational modification sites: A case study on hydroxylation. PLoS Comput. Biol. 16(6) (2020) - [i1]Ian Walsh, Dmytro Fishman, Dario Garcia-Gasulla, Tiina Titma, Jen Harrow, Fotis E. Psomopoulos, Silvio C. E. Tosatto:
Recommendations for machine learning validation in biology. CoRR abs/2006.16189 (2020)
2010 – 2019
- 2019
- [j42]Alex L. Mitchell
, Teresa K. Attwood
, Patricia C. Babbitt, Matthias Blum
, Peer Bork, Alan Bridge
, Shoshana D. Brown, Hsin-Yu Chang
, Sara El-Gebali
, Matthew Fraser, Julian Gough, David Haft, Hongzhan Huang, Ivica Letunic, Rodrigo Lopez
, Aurelien Luciani
, Fábio Madeira
, Aron Marchler-Bauer, Huaiyu Mi, Darren A. Natale, Marco Necci
, Gift Nuka, Christine A. Orengo, Arun Prasad Pandurangan
, Typhaine Paysan-Lafosse
, Sebastien Pesseat, Simon C. Potter
, Matloob Qureshi
, Neil D. Rawlings
, Nicole Redaschi
, Lorna Richardson
, Catherine Rivoire, Gustavo A. Salazar
, Amaia Sangrador-Vegas, Christian J. A. Sigrist
, Ian Sillitoe, Granger G. Sutton, Narmada Thanki, Paul D. Thomas
, Silvio C. E. Tosatto
, Siew-Yit Yong, Robert D. Finn
:
InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic Acids Res. 47(Database-Issue): D351-D360 (2019) - [j41]Sara El-Gebali
, Jaina Mistry
, Alex Bateman
, Sean R. Eddy
, Aurelien Luciani
, Simon C. Potter
, Matloob Qureshi
, Lorna Richardson
, Gustavo A. Salazar
, Alfredo Smart, Erik L. L. Sonnhammer, Layla Hirsh
, Lisanna Paladin
, Damiano Piovesan
, Silvio C. E. Tosatto
, Robert D. Finn
:
The Pfam protein families database in 2019. Nucleic Acids Res. 47(Database-Issue): D427-D432 (2019) - [j40]Giovanni Minervini
, Federica Quaglia
, Francesco Tabaro
, Silvio C. E. Tosatto
:
Genotype-phenotype relations of the von Hippel-Lindau tumor suppressor inferred from a large-scale analysis of disease mutations and interactors. PLoS Comput. Biol. 15(4) (2019) - 2018
- [j39]Marco Necci
, Damiano Piovesan
, Diego Micheletti, Lisanna Paladin
, Alessandro Cestaro, Silvio C. E. Tosatto:
PhytoTypeDB: a database of plant protein inter-cultivar variability and function. Database J. Biol. Databases Curation 2018: bay125 (2018) - [j38]Marco Necci
, Damiano Piovesan
, Silvio C. E. Tosatto
:
Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins. Database J. Biol. Databases Curation 2018: bay127 (2018) - [j37]Damiano Piovesan
, Silvio C. E. Tosatto
:
Mobi 2.0: an improved method to define intrinsic disorder, mobility and linear binding regions in protein structures. Bioinform. 34(1): 122-123 (2018) - [j36]Marco Necci
, Damiano Piovesan
, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto
:
A comprehensive assessment of long intrinsic protein disorder from the DisProt database. Bioinform. 34(3): 445-452 (2018) - [j35]Damiano Piovesan
, Francesco Tabaro
, Lisanna Paladin
, Marco Necci
, Ivan Micetic
, Carlo Camilloni
, Norman E. Davey
, Zsuzsanna Dosztányi, Bálint Mészáros
, Alexander Miguel Monzon
, Gustavo D. Parisi
, Eva Schad, Pietro Sormanni
, Peter Tompa, Michele Vendruscolo
, Wim F. Vranken
, Silvio C. E. Tosatto
:
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. Nucleic Acids Res. 46(Database-Issue): D471-D476 (2018) - [j34]Layla Hirsh
, Lisanna Paladin
, Damiano Piovesan
, Silvio C. E. Tosatto
:
RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins. Nucleic Acids Res. 46(Webserver-Issue): W402-W407 (2018) - 2017
- [j33]Marco Necci
, Damiano Piovesan
, Zsuzsanna Dosztányi, Silvio C. E. Tosatto
:
MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins. Bioinform. 33(9): 1402-1404 (2017) - [j32]Damiano Piovesan
, Ian Walsh
, Giovanni Minervini
, Silvio C. E. Tosatto
:
FELLS: fast estimator of latent local structure. Bioinform. 33(12): 1889-1891 (2017) - [j31]Robert D. Finn, Teresa K. Attwood
, Patricia C. Babbitt, Alex Bateman
, Peer Bork, Alan Bridge
, Hsin-Yu Chang
, Zsuzsanna Dosztányi, Sara El-Gebali
, Matthew Fraser, Julian Gough, David Haft, Gemma L. Holliday
, Hongzhan Huang, Xiaosong Huang
, Ivica Letunic
, Rodrigo Lopez, Shennan Lu, Aron Marchler-Bauer
, Huaiyu Mi, Jaina Mistry, Darren A. Natale, Marco Necci
, Gift Nuka, Christine A. Orengo, Youngmi Park
, Sebastien Pesseat
, Damiano Piovesan
, Simon C. Potter
, Neil D. Rawlings, Nicole Redaschi
, Lorna Richardson
, Catherine Rivoire
, Amaia Sangrador-Vegas
, Christian J. A. Sigrist
, Ian Sillitoe, Ben Smithers
, Silvano Squizzato, Granger G. Sutton, Narmada Thanki, Paul D. Thomas
, Silvio C. E. Tosatto
, Cathy H. Wu, Ioannis Xenarios, Lai-Su L. Yeh, Siew-Yit Yong, Alex L. Mitchell
:
InterPro in 2017 - beyond protein family and domain annotations. Nucleic Acids Res. 45(Database-Issue): D190-D199 (2017) - [j30]Damiano Piovesan
, Francesco Tabaro
, Ivan Micetic
, Marco Necci
, Federica Quaglia
, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic
, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos
, Andrey V. Kajava
, Lajos Kalmár
, Emanuela Leonardi
, Tamas Lazar, Sandra Macedo-Ribeiro
, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Eva Schad, Antoine Schramm, Beata Szabo, Agnes Tantos, Fiorella Tonello
, Konstantinos D. Tsirigos
, Nevena Veljkovic
, Salvador Ventura
, Wim F. Vranken
, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto
:
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45(Database-Issue): D219-D227 (2017) - [j29]Lisanna Paladin
, Layla Hirsh
, Damiano Piovesan
, Miguel A. Andrade-Navarro, Andrey V. Kajava
, Silvio C. E. Tosatto
:
RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures. Nucleic Acids Res. 45(Database-Issue): D308-D312 (2017) - [j28]Lisanna Paladin
, Damiano Piovesan
, Silvio C. E. Tosatto
:
SODA: prediction of protein solubility from disorder and aggregation propensity. Nucleic Acids Res. 45(Webserver-Issue): W236-W240 (2017) - [j27]Alexander Miguel Monzon
, Diego J. Zea
, María Silvina Fornasari, Tadeo E. Saldaño
, Sebastian Fernandez Alberti, Silvio C. E. Tosatto
, Gustavo D. Parisi
:
Conformational diversity analysis reveals three functional mechanisms in proteins. PLoS Comput. Biol. 13(2) (2017) - 2016
- [j26]Ian Walsh
, Gianluca Pollastri
, Silvio C. E. Tosatto
:
Correct machine learning on protein sequences: a peer-reviewing perspective. Briefings Bioinform. 17(5): 831-840 (2016) - [j25]Jon C. Ison
, Kristoffer Rapacki, Hervé Ménager
, Matús Kalas
, Emil Rydza, Piotr Chmura
, Christian Anthon
, Niall Beard
, Karel Berka
, Dan M. Bolser
, Tim Booth
, Anthony Bretaudeau, Jan Brezovsky
, Rita Casadio
, Gianni Cesareni, Frederik Coppens
, Michael Cornell, Gianmauro Cuccuru
, Kristian Davidsen, Gianluca Della Vedova
, Tunca Dogan
, Olivia Doppelt-Azeroual
, Laura Emery, Elisabeth Gasteiger
, Thomas Gatter, Tatyana Goldberg, Marie Grosjean
, Björn A. Grüning
, Manuela Helmer-Citterich
, Hans Ienasescu, Vassilios Ioannidis
, Martin Closter Jespersen, Rafael C. Jimenez
, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata
, Fabien Mareuil
, Ivan Micetic
, Rune Møllegaard Friborg, Sébastien Moretti
, Chris Morris
, Steffen Möller, Aleksandra Nenadic, Hedi Peterson
, Giuseppe Profiti
, Peter M. Rice, Paolo Romano
, Paola Roncaglia, Rabie Saidi
, Andrea Schafferhans
, Veit Schwämmle
, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger
, Radka Svobodová Vareková, Silvio C. E. Tosatto
, Victor de la Torre, Paolo Uva
, Allegra Via, Guy Yachdav, Federico Zambelli
, Gert Vriend, Burkhard Rost, Helen E. Parkinson
, Peter Løngreen, Søren Brunak
:
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - [j24]Damiano Piovesan
, Giovanni Minervini
, Silvio C. E. Tosatto
:
The RING 2.0 web server for high quality residue interaction networks. Nucleic Acids Res. 44(Webserver-Issue): W367-W374 (2016) - 2015
- [j23]Ian Walsh
, Manuel Giollo, Tomás Di Domenico
, Carlo Ferrari
, Olav Zimmermann, Silvio C. E. Tosatto
:
Comprehensive large-scale assessment of intrinsic protein disorder. Bioinform. 31(2): 201-208 (2015) - [j22]Layla Hirsh
, Damiano Piovesan
, Manuel Giollo, Carlo Ferrari
, Silvio C. E. Tosatto
:
The Victor C++ library for protein representation and advanced manipulation. Bioinform. 31(7): 1138-1140 (2015) - [j21]Emilio Potenza, Tomás Di Domenico
, Ian Walsh
, Silvio C. E. Tosatto
:
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins. Nucleic Acids Res. 43(Database-Issue): 315-320 (2015) - [j20]Damiano Piovesan
, Manuel Giollo, Emanuela Leonardi
, Carlo Ferrari
, Silvio C. E. Tosatto
:
INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity. Nucleic Acids Res. 43(Webserver-Issue): W134-W140 (2015) - 2014
- [j19]Tomás Di Domenico
, Emilio Potenza
, Ian Walsh
, R. Gonzalo Parra
, Manuel Giollo, Giovanni Minervini
, Damiano Piovesan
, Awais Ihsan
, Carlo Ferrari
, Andrey V. Kajava
, Silvio C. E. Tosatto
:
RepeatsDB: a database of tandem repeat protein structures. Nucleic Acids Res. 42(Database-Issue): 352-357 (2014) - [j18]Ian Walsh
, Flavio Seno
, Silvio C. E. Tosatto
, Antonio Trovato
:
PASTA 2.0: an improved server for protein aggregation prediction. Nucleic Acids Res. 42(Webserver-Issue): 301-307 (2014) - 2013
- [j17]Tomás Di Domenico
, Ian Walsh
, Silvio C. E. Tosatto
:
Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database. BMC Bioinform. 14(S-7): S3 (2013) - 2012
- [j16]Ian Walsh
, Alberto J. M. Martin
, Tomás Di Domenico
, Silvio C. E. Tosatto
:
ESpritz: accurate and fast prediction of protein disorder. Bioinform. 28(4): 503-509 (2012) - [j15]Tomás Di Domenico
, Ian Walsh
, Alberto J. M. Martin, Silvio C. E. Tosatto
:
MobiDB: a comprehensive database of intrinsic protein disorder annotations. Bioinform. 28(15): 2080-2081 (2012) - [j14]Ian Walsh
, Giovanni Minervini
, Alessandra Corazza
, Gennaro Esposito, Silvio C. E. Tosatto
, Federico Fogolari
:
Bluues server: electrostatic properties of wild-type and mutated protein structures. Bioinform. 28(16): 2189-2190 (2012) - [j13]Ian Walsh
, Francesco Sirocco, Giovanni Minervini
, Tomás Di Domenico
, Carlo Ferrari
, Silvio C. E. Tosatto
:
RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures. Bioinform. 28(24): 3257-3264 (2012) - [c2]Manuel Giollo, Giovanni Minervini, Marta Scalzotto, Emanuela Leonardi, Carlo Ferrari, Silvio C. E. Tosatto:
In silico blood genotyping from exome sequencing data. AIMM 2012 - 2011
- [j12]Alberto J. M. Martin
, Michele Vidotto, Filippo Boscariol, Tomás Di Domenico
, Ian Walsh
, Silvio C. E. Tosatto
:
RING: networking interacting residues, evolutionary information and energetics in protein structures. Bioinform. 27(14): 2003-2005 (2011) - [j11]Ian Walsh
, Alberto J. M. Martin
, Tomás Di Domenico
, Alessandro Vullo
, Gianluca Pollastri
, Silvio C. E. Tosatto
:
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs. Nucleic Acids Res. 39(Web-Server-Issue): 190-196 (2011) - 2010
- [j10]Alberto J. M. Martin, Ian Walsh
, Silvio C. E. Tosatto
:
MOBI: a web server to define and visualize structural mobility in NMR protein ensembles. Bioinform. 26(22): 2916-2917 (2010) - [j9]Svetlana Kirillova, Silvio C. E. Tosatto
, Oliviero Carugo:
FRASS: the web-server for RNA structural comparison. BMC Bioinform. 11: 327 (2010)
2000 – 2009
- 2009
- [j8]Luca Marsella, Francesco Sirocco, Antonio Trovato
, Flavio Seno, Silvio C. E. Tosatto
:
REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform. Bioinform. 25(12) (2009) - 2008
- [j7]Francesco Sirocco, Silvio C. E. Tosatto
:
TESE: generating specific protein structure test set ensembles. Bioinform. 24(22): 2632-2633 (2008) - 2007
- [j6]Silvio C. E. Tosatto
, Roberto Battistutta:
TAP score: torsion angle propensity normalization applied to local protein structure evaluation. BMC Bioinform. 8 (2007) - 2006
- [j5]Ingolf Sommer, Stefano Toppo
, Oliver Sander, Thomas Lengauer, Silvio C. E. Tosatto
:
Improving the quality of protein structure models by selecting from alignment alternatives. BMC Bioinform. 7: 364 (2006) - [j4]Alessandro Vullo
, Oscar Bortolami
, Gianluca Pollastri
, Silvio C. E. Tosatto
:
Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines. Nucleic Acids Res. 34(Web-Server-Issue): 164-168 (2006) - 2005
- [j3]Paolo Fontana, Eckart Bindewald, Stefano Toppo
, Riccardo Velasco
, Giorgio Valle
, Silvio C. E. Tosatto
:
The SSEA server for protein secondary structure alignment. Bioinform. 21(3): 393-395 (2005) - [j2]Federico Fogolari
, Silvio C. E. Tosatto
, Giorgio Colombo
:
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators. BMC Bioinform. 6: 301 (2005) - [j1]Silvio C. E. Tosatto
:
The Victor/FRST Function for Model Quality Estimation. J. Comput. Biol. 12(10): 1316-1327 (2005) - [c1]Mario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto
, Thomas Lengauer:
Decomposing protein networks into domain-domain interactions. ECCB/JBI 2005: 221
Coauthor Index

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last updated on 2021-01-06 01:07 CET by the dblp team
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