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Baris E. Suzek
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2010 – 2019
- 2018
- [c3]Erdem Turk, Turkan Arit, Delikanli Mertcan Susus, Ilayda Ucar, Baris E. Suzek:
ProSetComp: A Platform for Protein Set Comparisons. BCB 2018: 519 - 2015
- [j16]Baris E. Suzek
, Yuqi Wang, Hongzhan Huang, Peter B. McGarvey
, Cathy H. Wu
:
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches. Bioinform. 31(6): 926-932 (2015) - 2013
- [j15]Chuming Chen
, Zhiwen Li, Hongzhan Huang, Baris E. Suzek
, Cathy H. Wu
:
A fast Peptide Match service for UniProt Knowledgebase. Bioinform. 29(21): 2808-2809 (2013) - [j14]Andrew J. Buckler
, David Paik, Matt Ouellette, Jovanna Danagoulian, Gary Wernsing, Baris E. Suzek
:
A Novel Knowledge Representation Framework for the Statistical Validation of Quantitative Imaging Biomarkers. J. Digit. Imaging 26(4): 614-629 (2013) - [j13]Andrew J. Buckler
, Matt Ouellette, Jovanna Danagoulian, Gary Wernsing, Tiffany Ting Liu, Erica S. Savig, Baris E. Suzek
, Daniel L. Rubin, David Paik:
Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers. J. Digit. Imaging 26(4): 630-641 (2013) - [j12]Andrew J. Buckler
, Tiffany Ting Liu, Erica S. Savig, Baris E. Suzek
, Daniel L. Rubin, David Paik:
Erratum to: Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers. J. Digit. Imaging 26(4): 642 (2013) - [c2]Peter B. McGarvey, Baris E. Suzek
, Shruti Rao, Subha Madhavan, James N. Baraniuk, Samir Lababidi, Andrea Sutherland, Richard Forshee:
In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases. BCB 2013: 650 - 2012
- [j11]Robert R. Freimuth
, Elaine T. Freund, Lisa Schick, Mukesh K. Sharma, Grace A. Stafford, Baris E. Suzek
, Joyce Hernandez, Jason Hipp, Jenny M. Kelley, Konrad Rokicki
, Sue Pan, Andrew J. Buckler
, Todd H. Stokes, Anna T. Fernandez, Ian Fore
, Kenneth H. Buetow, Juli D. Klemm:
Life sciences domain analysis model. J. Am. Medical Informatics Assoc. 19(6): 1095-1102 (2012) - [j10]Peter B. McGarvey
, Sweta Ladwa, Mauricio Oberti
, Anca Dana Dragomir, Erin K. Hedlund, David M. Tanenbaum, Baris E. Suzek
, Subha Madhavan:
Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries. J. Am. Medical Informatics Assoc. 19(e1) (2012) - 2011
- [j9]Hongzhan Huang, Peter B. McGarvey
, Baris E. Suzek
, Raja Mazumder
, Jian Zhang, Yongxing Chen, Cathy H. Wu
:
A comprehensive protein-centric ID mapping service for molecular data integration. Bioinform. 27(8): 1190-1191 (2011)
2000 – 2009
- 2009
- [j8]Eric Jain, Amos Bairoch
, Severine Duvaud, Isabelle Phan
, Nicole Redaschi
, Baris E. Suzek
, Maria Jesus Martin
, Peter B. McGarvey
, Elisabeth Gasteiger
:
Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinform. 10 (2009) - 2008
- [c1]Wei Tan, Ravi K. Madduri
, Kiran Keshav, Baris E. Suzek
, Scott Oster, Ian T. Foster
:
Orchestrating caGrid Services in Taverna. ICWS 2008: 14-20 - 2007
- [j7]Baris E. Suzek
, Hongzhan Huang, Peter B. McGarvey
, Raja Mazumder
, Cathy H. Wu
:
UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinform. 23(10): 1282-1288 (2007) - 2006
- [j6]Cathy H. Wu
, Rolf Apweiler
, Amos Bairoch
, Darren A. Natale
, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger
, Hongzhan Huang, Rodrigo Lopez
, Michele Magrane
, Maria Jesus Martin
, Raja Mazumder
, Claire O'Donovan
, Nicole Redaschi
, Baris E. Suzek
:
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34(Database-Issue): 187-191 (2006) - 2004
- [j5]Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu:
The PIR integrated protein databases and data retrieval system. Data Sci. J. 3: 163-174 (2004) - [j4]Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, Cholanayakanahalli R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder
, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek
, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker:
PIRSF: family classification system at the Protein Information Resource. Nucleic Acids Res. 32(Database-Issue): 112-114 (2004) - 2003
- [j3]Cathy H. Wu
, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek
, Cholanayakanahalli R. Vinayaka, Jian Zhang, Winona C. Barker:
The Protein Information Resource. Nucleic Acids Res. 31(1): 345-347 (2003) - 2002
- [j2]Cathy H. Wu
, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek
, Akira Tsugita, Cholanayakanahalli R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker:
The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Res. 30(1): 35-37 (2002) - 2001
- [j1]Baris E. Suzek
, Maria D. Ermolaeva, Mark J. Schreiber, Steven Salzberg
:
A probabilistic method for identifying start codons in bacterial genomes. Bioinform. 17(12): 1123-1130 (2001)
Coauthor Index
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