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ORCIDThomas M. Oinn
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2010 – 2019
- 2011
[j12]Toshiaki Katayama, Mark D. Wilkinson
, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi:
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semant. 2: 4 (2011)- 2010
- [j11]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi:
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010) - [c12]Paolo Missier, Stian Soiland-Reyes, Stuart Owen, Wei Tan, Aleksandra Nenadic, Ian Dunlop, Alan R. Williams, Tom Oinn, Carole A. Goble:
Taverna, Reloaded. SSDBM 2010: 471-481
2000 – 2009
- 2009
- [j10]Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn, Carole A. Goble, Khalid Belhajjame, Paolo Missier:
The data playground: An intuitive workflow specification environment. Future Gener. Comput. Syst. 25(4): 453-459 (2009) - 2008
- [j9]Peter Li, Tom Oinn, Stian Soiland, Douglas B. Kell:
Automated manipulation of systems biology models using libSBML within Taverna workflows. Bioinform. 24(2): 287-289 (2008) - [j8]Anders Lanzén, Tom Oinn:
The Taverna Interaction Service: enabling manual interaction in workflows. Bioinform. 24(8): 1118-1120 (2008) - [j7]Peter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell:
Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data. BMC Bioinform. 9 (2008) - [c11]Khalid Belhajjame, Katy Wolstencroft, Óscar Corcho, Tom Oinn, Franck Tanoh, Alan R. Williams, Carole A. Goble:
Metadata Management in the Taverna Workflow System. CCGRID 2008: 651-656 - 2007
- [c10]Steve Pettifer, Katy Wolstencroft, Pinar Alper, Teresa K. Attwood, Alain Coletta, Carole A. Goble, Peter Li, Philip McDermott, James Marsh, Tom Oinn, James Sinnott, David Thorne:
myGrid and UTOPIA: An Integrated Approach to Enacting and Visualising in Silico Experiments in the Life Sciences. DILS 2007: 59-70 - [c9]Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn, Carole A. Goble:
The Data Playground: An Intuitive Workflow Specification Environment. eScience 2007: 59-68 - [c8]Daniele Turi, Paolo Missier, Carole A. Goble, David De Roure, Tom Oinn:
Taverna Workflows: Syntax and Semantics. eScience 2007: 441-448 - [p1]Tom Oinn, Peter Li, Douglas B. Kell, Carole A. Goble, Antoon Goderis, Robert Mark Greenwood, Duncan Hull, Robert Stevens, Daniele Turi, Jun Zhao:
Taverna/myGrid: Aligning a Workflow System with the Life Sciences Community. Workflows for e-Science, Scientific Workflows for Grids 2007: 300-319 - 2006
- [j6]Thomas M. Oinn, Robert Mark Greenwood, Matthew Addis, Mahmut Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole A. Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip W. Lord, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat, Chris Wroe:
Taverna: lessons in creating a workflow environment for the life sciences. Concurr. Comput. Pract. Exp. 18(10): 1067-1100 (2006) - [j5]Duncan Hull, Katy Wolstencroft, Robert Stevens, Carole A. Goble, Matthew R. Pocock, Peter Li, Tom Oinn:
Taverna: a tool for building and running workflows of services. Nucleic Acids Res. 34(Web-Server-Issue): 729-732 (2006) - 2005
- [c7]Katy Wolstencroft, Thomas M. Oinn, Carole A. Goble, Justin Ferris, Chris Wroe, Phillip W. Lord, Kevin Glover, Robert Stevens:
Panoply of Utilities in Taverna. e-Science 2005: 156-162 - [c6]Mahmut Nedim Alpdemir, Arijit Mukherjee, Norman W. Paton, Alvaro A. A. Fernandes, Paul Watson, Kevin Glover, Chris Greenhalgh, Thomas M. Oinn, Hannah J. Tipney:
Contextualised Workflow Execution in MyGrid. EGC 2005: 444-453 - 2004
- [j4]Thomas M. Oinn, Matthew Addis, Justin Ferris, Darren Marvin, Martin Senger, Robert Mark Greenwood, Tim Carver, Kevin Glover, Matthew R. Pocock, Anil Wipat, Peter Li:
Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinform. 20(17): 3045-3054 (2004) - [c5]Robert D. Stevens, Hannah J. Tipney, Chris Wroe, Thomas M. Oinn, Martin Senger, Phillip W. Lord, Carole A. Goble, Andy Brass, M. Tassabehji:
Exploring Williams-Beuren syndrome using myGrid. ISMB/ECCB (Supplement of Bioinformatics) 2004: 303-310 - [c4]Thomas M. Oinn, Matthew Addis, Justin Ferris, Darren Marvin, Robert Mark Greenwood, Carole A. Goble, Anil Wipat, Peter Li, Tim Carver:
Delivering web service coordination capability to users. WWW (Alternate Track Papers & Posters) 2004: 438-439 - 2003
- [c3]Luc Moreau, Simon Miles, Carole A. Goble, Robert Mark Greenwood, Vijay Dialani, Matthew Addis, Mahmut Nedim Alpdemir, Rich Cawley, David De Roure, Justin Ferris, Robert J. Gaizauskas, Kevin Glover, Chris Greenhalgh, Peter Li, Xiaojian Liu, Phillip W. Lord, Michael Luck, Darren Marvin, Thomas M. Oinn, Norman W. Paton, Steve Pettifer, Milena V. Radenkovic, Angus Roberts, Alan J. Robinson, Tom Rodden, Martin Senger, Nick Sharman, Robert Stevens, Brian Warboys, Anil Wipat, Chris Wroe:
On the Use of Agents in BioInformatics Grid. CCGRID 2003: 653-660 - [c2]Thomas M. Oinn:
Talisman - rapid application development for the grid. ISMB (Supplement of Bioinformatics) 2003: 212-214 - 2002
- [j3]Alexander Kanapin, Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Florence Servant, Evgeni M. Zdobnov:
Interactive InterPro-based comparisons of proteins in whole genomes. Bioinform. 18(2): 374-375 (2002) - 2001
- [j2]Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov:
The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29(1): 37-40 (2001) - 2000
- [j1]Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov:
InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinform. 16(12): 1145-1150 (2000) - [c1]Margaret Biswas, Rolf Apweiler, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Evgeni M. Zdobnov:
Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes. German Conference on Bioinformatics 2000: 149-158
Coauthor Index
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