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Journal of the American Medical Informatics Association, Volume 20
Volume 20, Number 1, January 2013
- Lucila Ohno-Machado:
Sharing data for the public good and protecting individual privacy: informatics solutions to combine different goals. 1
- Bradley A. Malin, Khaled El Emam, Christine M. O'Keefe
:
Biomedical data privacy: problems, perspectives, and recent advances. 2-6 - Kelly Caine, Rima Hanania:
Patients want granular privacy control over health information in electronic medical records. 7-15 - Maja van der Velden
, Khaled El Emam:
"Not all my friends need to know": a qualitative study of teenage patients, privacy, and social media. 16-24 - Caitlin Pencarrick Hertzman, Nancy Meagher, Kimberlyn M. McGrail:
Privacy by Design at Population Data BC: a case study describing the technical, administrative, and physical controls for privacy-sensitive secondary use of personal information for research in the public interest. 25-28 - Deven McGraw:
Building public trust in uses of Health Insurance Portability and Accountability Act de-identified data. 29-34 - Carolyn Petersen
, Paul DeMuro, Kenneth W. Goodman, Bonnie Kaplan:
Sorrell v. IMS Health: issues and opportunities for informaticians. 35-37 - Patricia Kosseim, Daryl Pullman, Astrid Perrot-Daley, Kathy Hodgkinson, Catherine Street, Proton Rahman:
Privacy protection and public goods: building a genetic database for health research in Newfoundland and Labrador. 38-43 - Juhee Kwon
, M. Eric Johnson:
Security practices and regulatory compliance in the healthcare industry. 44-51 - Daniel Fabbri, Kristen LeFevre:
Explaining accesses to electronic medical records using diagnosis information. 52-60 - Ryen White, Eric Horvitz:
From web search to healthcare utilization: privacy-sensitive studies from mobile data. 61-68 - Christopher A. Cassa
, Rachel A. Miller, Kenneth D. Mandl:
A novel, privacy-preserving cryptographic approach for sharing sequencing data. 69-76 - Óscar Ferrández, Brett R. South, Shuying Shen, F. Jeffrey Friedlin, Matthew H. Samore, Stéphane M. Meystre:
BoB, a best-of-breed automated text de-identification system for VHA clinical documents. 77-83 - Louise Deléger
, Katalin Molnár, Guergana Savova, Fei Xia, Todd Lingren, Qi Li, Keith Marsolo, Anil G. Jegga
, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Large-scale evaluation of automated clinical note de-identification and its impact on information extraction. 84-94 - Ravi V. Atreya, Joshua C. Smith, Allison B. McCoy
, Bradley A. Malin, Randolph A. Miller:
Reducing patient re-identification risk for laboratory results within research datasets. 95-101 - Cynthia Dwork, Rebecca Pottenger:
Toward practicing privacy. 102-108 - James J. Gardner, Li Xiong
, Yonghui Xiao, Jingjing Gao, Andrew R. Post, Xiaoqian Jiang, Lucila Ohno-Machado
:
SHARE: system design and case studies for statistical health information release. 109-116
- George Hripcsak, David J. Albers:
Next-generation phenotyping of electronic health records. 117-121 - Keith Marsolo:
Informatics and operations - let's get integrated. 122-124 - Daniela M. Witten, Robert Tibshirani:
Scientific research in the age of omics: the good, the bad, and the sloppy. 125-127 - Toni R. Farley, Jeff Kiefer, Preston Lee, Daniel Von Hoff, Jeffrey M. Trent, Charles J. Colbourn, Spyro Mousses:
The BioIntelligence Framework: a new computational platform for biomedical knowledge computing. 128-133 - Caitlin M. Cusack, George Hripcsak, Meryl Bloomrosen, S. Trent Rosenbloom, Charlotte A. Weaver, Adam Wright, David K. Vawdrey, Jim Walker, Lena Mamykina:
The future state of clinical data capture and documentation: a report from AMIA's 2011 Policy Meeting. 134-140 - Kenneth W. Goodman, Samantha A. Adams, Eta S. Berner
, Peter J. Embí, Robert C. Hsiung, John F. Hurdle
, Dixie A. Jones, Christoph U. Lehmann
, Sarah A. Maulden, Carolyn Petersen
, Enrique Terrazas, Peter Winkelstein:
AMIA's Code of Professional and Ethical Conduct. 141-143 - Nicole Gray Weiskopf
, Chunhua Weng
:
Methods and dimensions of electronic health record data quality assessment: enabling reuse for clinical research. 144-151 - Jessica S. Ancker
, Michael D. Silver, Melissa C. Miller, Rainu Kaushal:
Consumer experience with and attitudes toward health information technology: a nationwide survey. 152-156 - Yaorong Ge, David K. Ahn, Bhagyashree Unde, H. Donald Gage, John Jeffrey Carr
:
Patient-controlled sharing of medical imaging data across unaffiliated healthcare organizations. 157-163 - John F. Hurdle
, Stephen C. Haroldsen, Andrew Hammer, Cindy Spigle, Alison M. Fraser, Geraldine P. Mineau, Samir J. Courdy:
Identifying clinical/translational research cohorts: ascertainment via querying an integrated multi-source database. 164-171 - Marc D. Natter, Justin Quan, David M. Ortiz, Athos Bousvaros, Norman T. Ilowite
, Christi J. Inman, Keith Marsolo, Andrew J. McMurry, Christy Sandborg, Laura E. Schanberg, Carol A. Wallace, Robert W. Warren, Griffin M. Weber
, Kenneth D. Mandl:
An i2b2-based, generalizable, open source, self-scaling chronic disease registry. 172-179 - David Cumin
, Vanessa Newton-Wade, Michael J. Harrison, Alan F. Merry
:
Two open access, high-quality datasets from anesthetic records. 180-183 - Paul Avillach, Preciosa M. Coloma, Rosa Gini
, Martijn J. Schuemie
, Fleur Mougin
, Jean-Charles Dufour
, Giampiero Mazzaglia
, Carlo Giaquinto
, Carla Fornari
, Ron Herings, Mariam Molokhia, Lars Pedersen, Annie Fourrier-Réglat, Marius Fieschi, Miriam C. J. M. Sturkenboom, Johan van der Lei, Antoine Pariente
, Gianluca Trifirò:
Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project. 184-192 - Stephen G. Jones, Steven Coulter, William Conner:
Using administrative medical claims data to supplement state disease registry systems for reporting zoonotic infections. 193-198 - Kensaku Kawamoto, Tonya Hongsermeier, Adam Wright, Janet Lewis, Douglas S. Bell
, Blackford Middleton
:
Key principles for a national clinical decision support knowledge sharing framework: synthesis of insights from leading subject matter experts. 199-207
- Kevin M. Fickenscher:
President's column: An AMIA update - new directions and new opportunities. 208-210
Volume 20, Number 2, March 2013
- Lucila Ohno-Machado
:
Informatics that works for you. 211
- Thomas H. Payne, David W. Bates, Eta S. Berner
, Elmer V. Bernstam, H. Dominic Covvey, Mark E. Frisse
, Thomas Graf, Robert A. Greenes, Edward P. Hoffer, Gilad J. Kuperman
, Harold P. Lehmann
, Louise Liang, Blackford Middleton
, Gilbert S. Omenn
, Judy G. Ozbolt:
Healthcare information technology and economics. 212-217 - Howard R. Strasberg, Guilherme Del Fiol
, James J. Cimino
:
Terminology challenges implementing the HL7 context-aware knowledge retrieval ('Infobutton') standard. 218-223 - Charles P. Friedman:
What informatics is and isn't. 224-226
- Joshua R. Vest
, Jangho Yoon
, Brian H. Bossak:
Changes to the electronic health records market in light of health information technology certification and meaningful use. 227-232 - Christopher A. Harle
, Timothy R. Huerta
, Eric W. Ford
, Mark L. Diana, Nir Menachemi:
Overcoming challenges to achieving meaningful use: insights from hospitals that successfully received Centers for Medicare and Medicaid Services payments in 2011. 233-237 - Juan Eugenio Hernández-Ávila
, Lina Sofia Palacio-Mejía
, Agustín Lara-Esqueda, Eva Silvestre, Marcela Agudelo-Botero
, Mark L. Diana, David R. Hotchkiss, Beatriz Plaza, Alicia Sanchez Parbul:
Assessing the process of designing and implementing electronic health records in a statewide public health system: the case of Colima, Mexico. 238-244 - Gail M. Keenan, Elizabeth Yakel, Karen Dunn Lopez, Dana Tschannen
, Yvonne B. Ford:
Challenges to nurses' efforts of retrieving, documenting, and communicating patient care information. 245-251 - Peter Hoonakker
, Pascale Carayon, Roger L. Brown, Randi S. Cartmill, Tosha B. Wetterneck, James M. Walker:
Changes in end-user satisfaction with Computerized Provider Order Entry over time among nurses and providers in intensive care units. 252-259 - Brian Hilligoss, Kai Zheng:
Chart biopsy: an emerging medical practice enabled by electronic health records and its impacts on emergency department-inpatient admission handoffs. 260-267 - Namita L. Tundia, Christina M. L. Kelton, Teresa M. Cavanaugh, Jeff J. Guo, Dennis J. Hanseman, Pamela C. Heaton:
The effect of electronic medical record system sophistication on preventive healthcare for women. 268-276 - Sara J. Czaja, Joseph Sharit, Chin Chin Lee, Sankaran Nair, Mario A. Hernández, Neysarí Arana, Shih Hua Fu:
Factors influencing use of an e-health website in a community sample of older adults. 277-284 - Mehmet Kuzu, Murat Kantarcioglu, Elizabeth Ashley Durham, Csaba Tóth, Bradley A. Malin:
A practical approach to achieve private medical record linkage in light of public resources. 285-292 - Christian Zunner, Thomas Bürkle
, Hans-Ulrich Prokosch, Thomas Ganslandt
:
Mapping local laboratory interface terms to LOINC at a German university hospital using RELMA V.5: a semi-automated approach. 293-297 - Ricardo Sánchez-de-Madariaga
, Adolfo Muñoz Carrero
, Jesús Cáceres Tello, Roberto Somolinos, Mario Pascual Carrasco
, Ignacio Martínez
, Carlos Hernández Salvador, Jose Luis Monteagudo:
ccML, a new mark-up language to improve ISO/EN 13606-based electronic health record extracts practical edition. 298-304
- Jason S. Adelman, Gary E. Kalkut
, Clyde B. Schechter, Jeffrey M. Weiss, Matthew A. Berger, Stan H. Reissman, Hillel W. Cohen
, Stephen J. Lorenzen, Daniel A. Burack, William N. Southern:
Understanding and preventing wrong-patient electronic orders: a randomized controlled trial. 305-310 - Aaron E. Carroll, Paul G. Biondich, Vibha Anand, Tamara M. Dugan, Stephen M. Downs:
A randomized controlled trial of screening for maternal depression with a clinical decision support system. 311-316 - Arch G. Mainous III
, Carol A. Lambourne, Paul J. Nietert
:
Impact of a clinical decision support system on antibiotic prescribing for acute respiratory infections in primary care: quasi-experimental trial. 317-324 - Torbjørn Torsvik, Børge Lillebo, Gustav Mikkelsen:
Presentation of clinical laboratory results: an experimental comparison of four visualization techniques. 325-331 - David A. Hanauer, Naren Ramakrishnan
:
Modeling temporal relationships in large scale clinical associations. 332-341 - David Carrell, Bradley A. Malin, John S. Aberdeen
, Samuel Bayer, Cheryl Clark, Ben Wellner, Lynette Hirschman:
Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text. 342-348 - Justin A. Strauss, Chun R. Chao, Marilyn L. Kwan, Syed A. Ahmed, Joanne E. Schottinger, Virginia P. Quinn:
Identifying primary and recurrent cancers using a SAS-based natural language processing algorithm. 349-355 - Prateek Jindal
, Dan Roth:
Using domain knowledge and domain-inspired discourse model for coreference resolution for clinical narratives. 356-362 - Nancy L. Wilczynski, K. Ann McKibbon, Stephen D. Walter, Amit X. Garg, R. Brian Haynes
:
MEDLINE clinical queries are robust when searching in recent publishing years. 363-368
- Jeroen S. de Bruin, Klaus-Peter Adlassnig, Alexander Blacky, Harald Mandl, Karsten Fehre, Walter Koller:
Effectiveness of an automated surveillance system for intensive care unit-acquired infections. 369-372 - Carlos Francisco Ríos-Bedoya, Casey Hay
:
Feasibility of using text messaging for unhealthy behaviors screening in a clinical setting: a case study on adolescent hazardous alcohol use. 373-376
- Ruchi Tiwari, Demetra S. Tsapepas, Jaclyn T. Powell, Spencer T. Martin:
Enhancements in healthcare information technology systems: customizing vendor-supplied clinical decision support for a high-risk patient population. 377-380 - Melchor Sánchez-Mendiola
, Adrián I. Martínez-Franco
, Argelia Rosales-Vega, Joel Villamar-Chulin, Florina Gatica-Lara, Rocío García-Durán, Adrián Martínez-González:
Development and implementation of a biomedical informatics course for medical students: challenges of a large-scale blended-learning program. 381-387
- Brandon M. Welch, Kensaku Kawamoto:
Clinical decision support for genetically guided personalized medicine: a systematic review. 388-400
- Kevin M. Fickenscher:
President's column: AMIA - Expanding and Extending Our Reach. 401-402
Volume 20, Number 3, May 2013
- Lucila Ohno-Machado
:
Health surveillance using the internet and other sources of information. 403
- Ryen W. White, Nicholas P. Tatonetti
, Nigam H. Shah, Russ B. Altman, Eric Horvitz:
Web-scale pharmacovigilance: listening to signals from the crowd. 404-408 - Matthias Samwald
, Klaus-Peter Adlassnig:
Pharmacogenomics in the pocket of every patient? A prototype based on quick response codes. 409-412
- Rave Harpaz, Santiago Vilar
, William DuMouchel, Hojjat Salmasian, Krystl Haerian, Nigam H. Shah, Herbert S. Chase, Carol Friedman:
Combing signals from spontaneous reports and electronic health records for detection of adverse drug reactions. 413-419 - Mei Liu, Eugenia Renne McPeek Hinz, Michael Edwin Matheny
, Joshua C. Denny
, Jonathan Scott Schildcrout, Randolph A. Miller, Hua Xu:
Comparative analysis of pharmacovigilance methods in the detection of adverse drug reactions using electronic medical records. 420-426 - Marco F. Cusumano-Towner, Daniel Y. Li, Shanshan Tuo, Gomathi Krishnan, David M. Maslove:
A social network of hospital acquired infection built from electronic medical record data. 427-434 - Karen Elizabeth Cheng, David J. Crary, Jaideep Ray, Cosmin Safta:
Structural models used in real-time biosurveillance outbreak detection and outbreak curve isolation from noisy background morbidity levels. 435-440 - Reena Mahajan, Anne C. Moorman
, Stephen J. Liu, Loralee Rupp, R. Monina Klevens:
Use of the International Classification of Diseases, 9th revision, coding in identifying chronic hepatitis B virus infection in health system data: implications for national surveillance. 441-445 - Paul Avillach, Jean-Charles Dufour
, Gayo Diallo
, Francesco Salvo
, Michel Joubert, Frantz Thiessard
, Fleur Mougin
, Gianluca Trifirò, Annie Fourrier-Réglat, Antoine Pariente
, Marius Fieschi:
Design and validation of an automated method to detect known adverse drug reactions in MEDLINE: a contribution from the EU-ADR project. 446-452 - Khaled El Emam, Saeed Samet
, Luk Arbuckle, Robyn Tamblyn, Craig Earle, Murat Kantarcioglu:
A secure distributed logistic regression protocol for the detection of rare adverse drug events. 453-461 - Noman Mohammed, Xiaoqian Jiang, Rui Chen, Benjamin C. M. Fung
, Lucila Ohno-Machado
:
Privacy-preserving heterogeneous health data sharing. 462-469 - David C. Radley, Melanie R. Wasserman, Lauren E. W. Olsho
, Sarah J. Shoemaker, Mark Spranca, Bethany Bradshaw:
Reduction in medication errors in hospitals due to adoption of computerized provider order entry systems. 470-476 - William L. Galanter
, Suzanne Falck, Matthew Burns, Marci Laragh, Bruce L. Lambert:
Indication-based prescribing prevents wrong-patient medication errors in computerized provider order entry (CPOE). 477-481 - Kin Wah Fung, Chiang S. Jao, Dina Demner-Fushman:
Extracting drug indication information from structured product labels using natural language processing. 482-488 - Shobha Phansalkar, Heleen van der Sijs, Alisha D. Tucker, Amrita A. Desai, Douglas S. Bell
, Jonathan M. Teich, Blackford Middleton
, David W. Bates:
Drug-drug interactions that should be non-interruptive in order to reduce alert fatigue in electronic health records. 489-493 - Jon D. Duke, Xiaochun Li, Paul R. Dexter:
Adherence to drug-drug interaction alerts in high-risk patients: a trial of context-enhanced alerting. 494-498 - Margaret V. McDonald
, Timothy R. Peng, Sridevi Sridharan, Janice B. Foust, Polina Kogan, Liliana E. Pezzin, Penny H. Feldman:
Automating the medication regimen complexity index. 499-505 - Mei-Sing Ong, Farah Magrabi, Enrico W. Coiera
:
Syndromic surveillance for health information system failures: a feasibility study. 506-512 - Gabrielle M. Turner-McGrievy
, Michael W. Beets, Justin B. Moore
, Andrew T. Kaczynski, Daheia J. Barr-Anderson, Deborah F. Tate:
Comparison of traditional versus mobile app self-monitoring of physical activity and dietary intake among overweight adults participating in an mHealth weight loss program. 513-518 - Ashley E. Wade-Vuturo, Lindsay Satterwhite Mayberry, Chandra Y. Osborn:
Secure messaging and diabetes management: experiences and perspectives of patient portal users. 519-525 - Paul C. Tang, J. Marc Overhage
, Albert Solomon Chan, Nancy L. Brown, Bahar Aghighi, Martin P. Entwistle, Siu Lui Hui, Shauna M. Hyde, Linda H. Klieman, Charlotte J. Mitchell, Anthony J. Perkins
, Lubna Qureshi, Tanya A. Waltimyer, Leigha J. Winters, Charles Y. Young:
Online disease management of diabetes: Engaging and Motivating Patients Online With Enhanced Resources-Diabetes (EMPOWER-D), a randomized controlled trial. 526-534 - Mathias Kaspar, Nigel M. Parsad, Jonathan C. Silverstein
:
An optimized web-based approach for collaborative stereoscopic medical visualization. 535-543 - David M. Maslove, Tanya Podchiyska, Henry J. Lowe:
Discretization of continuous features in clinical datasets. 544-553 - Cui Tao
, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth
, Qian Zhu
, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute:
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. 554-562
- Gregory William Hruby, James McKiernan, Suzanne Bakken, Chunhua Weng:
A centralized research data repository enhances retrospective outcomes research capacity: a case report. 563-567
- Erin Mathieu
, Kevin McGeechan
, Alexandra Barratt, Robert Herbert
:
Internet-based randomized controlled trials: a systematic review. 568-576 - Brian E. Dixon
, Roland E. Gamache, Shaun J. Grannis
:
Towards public health decision support: a systematic review of bidirectional communication approaches. 577-583 - Judy Reed Edworthy:
Medical audible alarms: a review. 584-589
- Kyna McCullough Gooden, Xianying Pan, Hugh Kawabata, Jean-Marie Heim:
Correspondence: Use of an algorithm for identifying hidden drug-drug interactions in adverse event reports. 590 - Nicholas P. Tatonetti
, Joshua C. Denny
, Russ B. Altman:
Correspondence: Response to 'Use of an algorithm for identifying hidden drug-drug interactions in adverse event reports' by Gooden et al. 591
- Kevin M. Fickenscher:
President's column: interoperability - the 30% solution: from dialog and rhetoric to reality. 593-594
Volume 20, Number 4, July 2013
- Atul J. Butte, Lucila Ohno-Machado
:
Making it personal: translational bioinformatics. 595-596
- Simon Papillon-Cavanagh
, Nicolas De Jay, Nehme Hachem
, Catharina Olsen, Gianluca Bontempi
, Hugo J. W. L. Aerts, John Quackenbush
, Benjamin Haibe-Kains
:
Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity. 597-602 - Ryan J. Urbanowicz
, Angeline S. Andrew, Margaret R. Karagas, Jason H. Moore
:
Research and applications: Role of genetic heterogeneity and epistasis in bladder cancer susceptibility and outcome: a learning classifier system approach. 603-612 - Juhyeon Kim, Hyunjung Shin:
Research and applications: Breast cancer survivability prediction using labeled, unlabeled, and pseudo-labeled patient data. 613-618 - Younghee Lee, Haiquan Li
, Jianrong Li, Ellen Rebman, Ikbel Achour, Kelly Regan
, Eric R. Gamazon
, James L. Chen, Xinan Holly Yang, Nancy J. Cox, Yves A. Lussier
:
Research and applications: Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases. 619-629 - Ting Hu, Yuanzhu Peter Chen, Jeff Kiralis, Ryan L. Collins
, Christian Wejse
, Giorgio Sirugo, Scott M. Williams
, Jason H. Moore
:
Research and applications: An information-gain approach to detecting three-way epistatic interactions in genetic association studies. 630-636 - Je-Gun Joung, Do Kyoon Kim, Kyung-Hwa Kim, Ju Han Kim:
Research and applications: Extracting coordinated patterns of DNA methylation and gene expression in ovarian cancer. 637-642 - Zhe Zhang, Shawn Witham, Marharita Petukh, Gautier Moroy
, Maria A. Miteva
, Yoshihiko Ikeguchi, Emil Alexov:
Research and applications: A rational free energy-based approach to understanding and targeting disease-causing missense mutations. 643-651 - Laura K. Wiley
, Anushi Shah, Hua Xu, William S. Bush
:
Research and applications: ICD-9 tobacco use codes are effective identifiers of smoking status. 652-658 - Zhenshu Wen, Zhi-Ping Liu, Zhengrong Liu, Yan Zhang, Luonan Chen:
Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer. 659-667 - Vivekanand Sharma, Indra Neil Sarkar:
Research and applications: Leveraging biodiversity knowledge for potential phyto-therapeutic applications. 668-679 - Chao Wang, Thierry Pécot
, Debra L. Zynger, Raghu Machiraju, Charles L. Shapiro, Kun Huang:
Research and applications: Identifying survival associated morphological features of triple negative breast cancer using multiple datasets. 680-687