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2020 – today
- 2024
[j132]Lequn Wang
, Yaofeng Hu, Kai Xiao, Chuanchao Zhang, Qianqian Shi, Luonan Chen:
Multi-modal domain adaptation for revealing spatial functional landscape from spatially resolved transcriptomics. Briefings Bioinform. 25(4) (2024)- [i7]Jifan Shi, Yang Li, Juan Zhao, Siyang Leng, Kazuyuki Aihara, Luonan Chen, Wei Lin:
Deciphering interventional dynamical causality from non-intervention systems. CoRR abs/2407.01621 (2024) - [i6]Qibin Zhang, Chengshang Lyu, Lingxi Chen, Qiqi Jin, Luonan Chen:
CIDER: Counterfactual-Invariant Diffusion-based GNN Explainer for Causal Subgraph Inference. CoRR abs/2407.19376 (2024) - [i5]Jinling Yan, Shao-Wu Zhang, Chihao Zhang, Weitian Huang, Jifan Shi, Luonan Chen:
Dynamical causality under invisible confounders. CoRR abs/2408.05584 (2024) - 2023
- [j131]Lin Li, Rui Xia, Wei Chen, Qi Zhao, Peng Tao, Luonan Chen:
Single-cell causal network inferred by cross-mapping entropy. Briefings Bioinform. 24(5) (2023) - [j130]Chengming Zhang, Yiwen Yang, Shijie Tang, Kazuyuki Aihara, Chuanchao Zhang, Luonan Chen:
Contrastively generative self-expression model for single-cell and spatial multimodal data. Briefings Bioinform. 24(5) (2023) - [j129]Peng Tao, Xiaohu Hao, Jie Cheng, Luonan Chen:
Predicting time series by data-driven spatiotemporal information transformation. Inf. Sci. 622: 859-872 (2023) - [j128]Yi-Xuan Xiong, Meng-Guo Wang, Luonan Chen, Xiao-Fei Zhang:
Cell-type annotation with accurate unseen cell-type identification using multiple references. PLoS Comput. Biol. 19(6) (2023) - [j127]Yuanling Niu, Hao Kang, Pingyang Wang, Chenchen Guo, Fan Nie, Hongbin Ji, Jiarui Wu, Luonan Chen:
Why Increase of Heterogeneity Signals Pre-Deterioration During Tumor Progression: A Unified Mathematical Model. SIAM J. Appl. Math. 83(2): 791-815 (2023) - 2022
- [j126]Yiwei Meng, Yanhong Huang, Xiao Chang, Xiaoping Liu, Luonan Chen:
Transcriptome analysis method based on differential distribution evaluation. Briefings Bioinform. 23(2) (2022) - [j125]Chengming Zhang, Yabin Chen, Tao Zeng, Chuanchao Zhang, Luonan Chen:
Deep latent space fusion for adaptive representation of heterogeneous multi-omics data. Briefings Bioinform. 23(2) (2022) - [j124]Rong Gao, Jinling Yan, Peiluan Li, Luonan Chen:
Detecting the critical states during disease development based on temporal network flow entropy. Briefings Bioinform. 23(5) (2022) - [j123]Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith:
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. J. Biomed. Semant. 13(1): 25 (2022) - [j122]Yu Zhang, Xiao Chang, Jie Xia, Yanhong Huang, Shaoyan Sun, Luonan Chen, Xiaoping Liu:
Identifying network biomarkers of cancer by sample-specific differential network. BMC Bioinform. 23(1): 230 (2022) - [j121]Jinwang Feng, ShaoWu Zhang, Luonan Chen, Chunman Zuo, Alzheimer's Disease Neuroimaging Initiative:
Detection of Alzheimer's disease using features of brain region-of-interest-based individual network constructed with the sMRI image. Comput. Medical Imaging Graph. 98: 102057 (2022) - [j120]Yujie You, Le Zhang, Peng Tao, Suran Liu, Luonan Chen:
Spatiotemporal Transformer Neural Network for Time-Series Forecasting. Entropy 24(11): 1651 (2022) - [j119]Jining Wang, Chuan Chen, Zibin Zheng, Luonan Chen, Yuren Zhou:
Predicting high-dimensional time series data with spatial, temporal and global information. Inf. Sci. 607: 477-492 (2022) - [j118]Peng Tao, Jie Cheng, Luonan Chen:
Brain-inspired chaotic backpropagation for MLP. Neural Networks 155: 1-13 (2022) - [j117]Jinwang Feng, Shaowu Zhang, Luonan Chen:
Extracting ROI-Based Contourlet Subband Energy Feature From the sMRI Image for Alzheimer's Disease Classification. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1627-1639 (2022) - [i4]Peng Tao, Xiaohu Hao, Jie Cheng, Luonan Chen:
Time Series Prediction by Multi-task GPR with Spatiotemporal Information Transformation. CoRR abs/2204.12085 (2022) - 2021
- [j116]Yanhong Huang, Xiao Chang, Yu Zhang, Luonan Chen, Xiaoping Liu:
Disease characterization using a partial correlation-based sample-specific network. Briefings Bioinform. 22(3) (2021) - [j115]Chunman Zuo, Luonan Chen:
Deep-joint-learning analysis model of single cell transcriptome and open chromatin accessibility data. Briefings Bioinform. 22(4) (2021) - [j114]Le Zhang, Guangdi Liu, Meijing Kong, Tingting Li, Dan Wu, Xiaobo Zhou, Chuanwei Yang, Lei Xia, Zhenzhou Yang, Luonan Chen:
Revealing dynamic regulations and the related key proteins of myeloma-initiating cells by integrating experimental data into a systems biological model. Bioinform. 37(11): 1554-1561 (2021) - [j113]Chunman Zuo, Hao Dai, Luonan Chen:
Deep cross-omics cycle attention model for joint analysis of single-cell multi-omics data. Bioinform. 37(22): 4091-4099 (2021) - [j112]Lin Li, Hao Dai, Zhaoyuan Fang, Luonan Chen:
c-CSN: Single-cell RNA Sequencing Data Analysis by Conditional Cell-specific Network. Genom. Proteom. Bioinform. 19(2): 319-329 (2021) - [j111]Luonan Chen, Rong Fan, Fuchou Tang:
Advanced Single-cell Omics Technologies and Informatics Tools for Genomics, Proteomics, and Bioinformatics Analysis. Genom. Proteom. Bioinform. 19(3): 343-345 (2021) - [j110]Jinwang Feng, Shaowu Zhang, Luonan Chen, Jie Xia:
Alzheimer's disease classification using features extracted from nonsubsampled contourlet subband-based individual networks. Neurocomputing 421: 260-272 (2021) - [i3]Hao Peng, Pei Chen, Rui Liu, Luonan Chen:
Spatiotemporal convolutional network for time-series prediction and causal inference. CoRR abs/2107.01353 (2021) - 2020
- [j109]Jinwang Feng, Shao-Wu Zhang, Luonan Chen, Alzheimer's Disease Neuroimaging Initiative:
Identification of Alzheimer's disease based on wavelet transformation energy feature of the structural MRI image and NN classifier. Artif. Intell. Medicine 108: 101940 (2020) - [j108]Jifan Shi, Andrew E. Teschendorff, Weiyan Chen, Luonan Chen, Tiejun Li:
Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures. Briefings Bioinform. 21(1): 248-261 (2020) - [j107]Weifeng Guo, Shaowu Zhang, Tao Zeng, Tatsuya Akutsu, Luonan Chen:
Network control principles for identifying personalized driver genes in cancer. Briefings Bioinform. 21(5): 1641-1662 (2020) - [j106]Rui Liu, Pei Chen, Luonan Chen:
Single-sample landscape entropy reveals the imminent phase transition during disease progression. Bioinform. 36(5): 1522-1532 (2020) - [j105]Rui Liu, Pei Chen, Luonan Chen:
Corrigendum to: Single-sample landscape entropy reveals the imminent phase transition during disease progression. Bioinform. 36(8): 2644 (2020) - [j104]Jihong Hu, Tao Zeng, Qiongmei Xia, Liyu Huang, Yesheng Zhang, Chuanchao Zhang, Yan Zeng, Hui Liu, Shilai Zhang, Guangfu Huang, Wenting Wan, Yi Ding, Fengyi Hu, Congdang Yang, Luonan Chen, Wen Wang:
Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis. Genom. Proteom. Bioinform. 18(3): 256-270 (2020) - [j103]Yidi Sun, Chen Li, Shichao Pang, Qianlan Yao, Luonan Chen, Yixue Li, Rong Zeng:
Kinase-substrate Edge Biomarkers Provide A More Accurate Prognostic Prediction in ER-negative Breast Cancer. Genom. Proteom. Bioinform. 18(5): 525-538 (2020) - [j102]Hanah Goetz, Juan Ramon Melendez-Alvarez, Luonan Chen, Xiao-Jun Tian:
A plausible accelerating function of intermediate states in cancer metastasis. PLoS Comput. Biol. 16(3) (2020) - [j101]Jingxue Xin, Junjun Hao, Lang Chen, Tao Zhang, Lei Li, Luonan Chen, Wenmin Zhao, Xuemei Lu, Peng Shi, Yong Wang:
ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor. Quant. Biol. 8(1): 43-50 (2020) - [j100]Peng Wang, Luonan Chen:
Critical transitions and tipping points in EMT. Quant. Biol. 8(3): 195-202 (2020) - [j99]Ziwei Chen, Xiangqi Bai, Liang Ma, Xiawei Wang, Xiuqin Liu, Yuting Liu, Luonan Chen, Lin Wan:
A Branch Point on Differentiation Trajectory is the Bifurcating Event Revealed by Dynamical Network Biomarker Analysis of Single-Cell Data. IEEE ACM Trans. Comput. Biol. Bioinform. 17(2): 366-375 (2020) - [j98]Jifan Shi, Juan Zhao, Xiaoping Liu, Luonan Chen, Tiejun Li:
Quantifying Direct Dependencies in Biological Networks by Multiscale Association Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 17(2): 449-458 (2020) - [j97]Jingsong Zhang, Jianmei Guo, Ming Zhang, Xiangtian Yu, Xiaoqing Yu, Weifeng Guo, Tao Zeng, Luonan Chen:
Efficient Mining Multi-Mers in a Variety of Biological Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 949-958 (2020) - [c50]Luonan Chen:
Network biomarker for quantifying regular state of a biological system, and dynamic network biomarker for quantifying critical state of a biological system. BIBM 2020: 4 - [c49]Jingsong Zhang, Cheng Bi, Yinglin Wang, Tao Zeng, Bo Liao, Luonan Chen:
Efficient Mining Closed k-Mers from DNA and Protein Sequences. BigComp 2020: 342-349 - [c48]Yongqun He, Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman, Hsin-Hui Huang, John Beverley, Asiyah Yu Lin, William D. Duncan, Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian D. Athey, Barry Smith:
CIDO: The Community-Based Coronavirus Infectious Disease Ontology. ICBO/ODLS 2020: 1-10 - [e3]Wookey Lee, Luonan Chen, Yang-Sae Moon, Julien Bourgeois, Mehdi Bennis, Yu-Feng Li, Young-Guk Ha, Hyuk-Yoon Kwon, Alfredo Cuzzocrea:
2020 IEEE International Conference on Big Data and Smart Computing, BigComp 2020, Busan, Korea (South), February 19-22, 2020. IEEE 2020, ISBN 978-1-7281-6034-4 [contents]
2010 – 2019
- 2019
- [j96]Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Systems biology intertwines with single cell and AI. BMC Bioinform. 20-S(7): 204:1-204:3 (2019) - [j95]Samantha Sayers, Li Li, Edison Ong, Shunzhou Deng, Guanghua Fu, Yu Lin, Brian Yang, Shelley Zhang, Zhenzong Fa, Bin Zhao, Zuoshuang Xiang, Yongqing Li, Xing-Ming Zhao, Michal Olszewski, Luonan Chen, Yongqun He:
Victors: a web-based knowledge base of virulence factors in human and animal pathogens. Nucleic Acids Res. 47(Database-Issue): D693-D700 (2019) - [j94]Weifeng Guo, Shao-Wu Zhang, Tao Zeng, Yan Li, Jianxi Gao, Luonan Chen:
A novel network control model for identifying personalized driver genes in cancer. PLoS Comput. Biol. 15(11) (2019) - [j93]Jifan Shi, Tiejun Li, Luonan Chen, Kazuyuki Aihara:
Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process. PLoS Comput. Biol. 15(11) (2019) - [j92]Yongcui Wang, Shilong Chen, Luonan Chen, Yong Wang:
Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs. PLoS Comput. Biol. 15(12) (2019) - [j91]Chuan Chen, Jingxue Xin, Yong Wang, Luonan Chen, Michael K. Ng:
A Semisupervised Classification Approach for Multidomain Networks With Domain Selection. IEEE Trans. Neural Networks Learn. Syst. 30(1): 269-283 (2019) - 2018
- [j90]Weifeng Guo, Shao-Wu Zhang, Li-Li Liu, Fei Liu, Qianqian Shi, Lei Zhang, Ying Tang, Tao Zeng, Luonan Chen:
Discovering personalized driver mutation profiles of single samples in cancer by network control strategy. Bioinform. 34(11): 1893-1903 (2018) - [j89]Hao Jiang, Lydia L. Sohn, Haiyan Huang, Luonan Chen:
Single cell clustering based on cell-pair differentiability correlation and variance analysis. Bioinform. 34(21): 3684-3694 (2018) - [j88]Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Integrating data- and model-driven strategies in systems biology. BMC Syst. Biol. 12(4): 38:1-38:3 (2018) - [j87]Xiujuan Lei, Ming Fang, Fang-Xiang Wu, Luonan Chen:
Improved flower pollination algorithm for identifying essential proteins. BMC Syst. Biol. 12(4): 129-140 (2018) - 2017
- [j86]Qianqian Shi, Chuanchao Zhang, Minrui Peng, Xiangtian Yu, Tao Zeng, Juan Liu, Luonan Chen:
Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data. Bioinform. 33(17): 2706-2714 (2017) - [j85]Chuanchao Zhang, Juan Liu, Qianqian Shi, Tao Zeng, Luonan Chen:
Comparative network stratification analysis for identifying functional interpretable network biomarkers. BMC Bioinform. 18(S-3): 1-12 (2017) - [j84]Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Understanding biological systems through the lens of data. BMC Syst. Biol. 11(S-4): 77:1-77:2 (2017) - [j83]Ben-gong Zhang, Weibo Li, Yazhou Shi, Xiaoping Liu, Luonan Chen:
Detecting causality from short time-series data based on prediction of topologically equivalent attractors. BMC Syst. Biol. 11(S-7): 141-150 (2017) - [j82]Chuanchao Zhang, Juan Liu, Qianqian Shi, Tao Zeng, Luonan Chen:
Differential function analysis: identifying structure and activation variations in dysregulated pathways. Sci. China Inf. Sci. 60(1): 12108 (2017) - [j81]Xiaoping Liu, Xiao Chang, Rui Liu, Xiangtian Yu, Luonan Chen, Kazuyuki Aihara:
Quantifying critical states of complex diseases using single-sample dynamic network biomarkers. PLoS Comput. Biol. 13(7) (2017) - [c47]Jingsong Zhang, Jianmei Guo, Xiaoqing Yu, Xiangtian Yu, Weifeng Guo, Tao Zeng, Luonan Chen:
Mining K-mers of Various Lengths in Biological Sequences. ISBRA 2017: 186-195 - 2016
- [j80]Tao Zeng, Wanwei Zhang, Xiangtian Yu, Xiaoping Liu, Meiyi Li, Luonan Chen:
Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals. Briefings Bioinform. 17(4): 576-592 (2016) - [j79]Pei Chen, Rui Liu, Yongjun Li, Luonan Chen:
Detecting critical state before phase transition of complex biological systems by hidden Markov model. Bioinform. 32(14): 2143-2150 (2016) - [j78]Guangyong Zheng, Yaochen Xu, Xiujun Zhang, Zhi-Ping Liu, Zhuo Wang, Luonan Chen, Xin-Guang Zhu:
CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data. BMC Bioinform. 17(S-17): 137-144 (2016) - [j77]Fei Liu, Shao-Wu Zhang, Weifeng Guo, Ze-Gang Wei, Luonan Chen:
Inference of Gene Regulatory Network Based on Local Bayesian Networks. PLoS Comput. Biol. 12(8) (2016) - [c46]Chuanchao Zhang, Juan Liu, Qianqian Shi, Xiangtian Yu, Tao Zeng, Luonan Chen:
Integration of multiple heterogeneous omics data. BIBM 2016: 564-569 - 2015
- [j76]Takayuki Ishizaki, Kenji Kashima, Antoine Girard, Jun-ichi Imura, Luonan Chen, Kazuyuki Aihara:
Clustered model reduction of positive directed networks. Autom. 59: 238-247 (2015) - [j75]Xing-Ming Zhao, Keqin Liu, Guanghui Zhu, Feng He, Béatrice Duval, Jean-Michel Richer, De-Shuang Huang, Changjun Jiang, Jin-Kao Hao, Luonan Chen:
Identifying cancer-related microRNAs based on gene expression data. Bioinform. 31(8): 1226-1234 (2015) - [j74]Xindong Zhang, Lin Gao, Zhi-Ping Liu, Luonan Chen:
Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity. BMC Bioinform. 16: 92:1-92:10 (2015) - [j73]Xinan Yang, Meiyi Li, Bin Wang, Wanqi Zhu, Aurelie Desgardin, Kenan Onel, Jill de Jong, Jianjun Chen, Luonan Chen, John M. Cunningham:
Systematic computation with functional gene-sets among leukemic and hematopoietic stem cells reveals a favorable prognostic signature for acute myeloid leukemia. BMC Bioinform. 16: 97:1-97:21 (2015) - [j72]Ben-gong Zhang, Gouhei Tanaka, Kazuyuki Aihara, Masao Honda, Shuichi Kaneko, Luonan Chen:
Dynamics of an HBV Model with Drug Resistance Under Intermittent Antiviral Therapy. Int. J. Bifurc. Chaos 25(7): 1540011:1-1540011:12 (2015) - [j71]Shi-Hua Zhang, Luonan Chen:
Guest Editorial for Special Section on ISB/TBC 2014. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 1074-1075 (2015) - [j70]Hao Kang, Kwang-Hyun Cho, Xiaohua Douglas Zhang, Tao Zeng, Luonan Chen:
Inferring Sequential Order of Somatic Mutations during Tumorgenesis based on Markov Chain Model. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 1094-1103 (2015) - [c45]Chuanchao Zhang, Juan Liu, Qianqian Shi, Tao Zeng, Luonan Chen:
Identification of phenotypic networks based on whole transcriptome by comparative network decomposition. BIBM 2015: 189-194 - [i2]Hui-Jia Li, Hao Wang, Luonan Chen:
Measuring robustness of community structure in complex networks. CoRR abs/1503.08012 (2015) - [i1]Hui-Jia Li, Junhua Zhang, Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang:
Identifying overlapping communities in social networks using multi-scale local information expansion. CoRR abs/1503.08024 (2015) - 2014
- [j69]Meiyi Li, Tao Zeng, Rui Liu, Luonan Chen:
Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis. Briefings Bioinform. 15(2): 229-243 (2014) - [j68]Xiangtian Yu, Guojun Li, Luonan Chen:
Prediction and early diagnosis of complex diseases by edge-network. Bioinform. 30(6): 852-859 (2014) - [j67]Rui Liu, Xiangtian Yu, Xiaoping Liu, Dong Xu, Kazuyuki Aihara, Luonan Chen:
Identifying critical transitions of complex diseases based on a single sample. Bioinform. 30(11): 1579-1586 (2014) - [j66]Yixue Li, Luonan Chen:
Big Biological Data: Challenges and Opportunities. Genom. Proteom. Bioinform. 12(5): 187-189 (2014) - [j65]Huanfei Ma, Tianshou Zhou, Kazuyuki Aihara, Luonan Chen:
Predicting Time Series from Short-Term High-Dimensional Data. Int. J. Bifurc. Chaos 24(12) (2014) - [j64]Andrew E. Teschendorff, Xiaoping Liu, Helena Carén, Steve M. Pollard, Stephan Beck, Martin Widschwendter, Luonan Chen:
The Dynamics of DNA Methylation Covariation Patterns in Carcinogenesis. PLoS Comput. Biol. 10(7) (2014) - [c44]Tao Zeng, Ziming Wang, Luonan Chen:
Detecting Phosphorylation Determined Active Protein Interaction Network during Cancer Development by Robust Network Component Analysis. DTMBIO@CIKM 2014: 49 - [c43]Luonan Chen, Doheon Lee, Hua Xu, Min Song:
DTMBIO 2014: International Workshop on Data and Text Mining in Biomedical Informatics. CIKM 2014: 2090-2091 - [e2]Doheon Lee, Luonan Chen, Min Song, Hua Xu:
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, DTMBIO@CIKM 2014, Shanghai, China, November 7, 2014. ACM 2014, ISBN 978-1-4503-1275-2 [contents] - 2013
- [j63]Xiaoping Liu, Xiaodong Zhang, Weihua Tang, Luonan Chen, Xing-Ming Zhao:
eFG: an electronic resource for Fusarium graminearum. Database J. Biol. Databases Curation 2013 (2013) - [j62]Xiujun Zhang, Keqin Liu, Zhi-Ping Liu, Béatrice Duval, Jean-Michel Richer, Xing-Ming Zhao, Jin-Kao Hao, Luonan Chen:
NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference. Bioinform. 29(1): 106-113 (2013) - [j61]Chao Zhang, Jiguang Wang, Kristina Hanspers, Dong Xu, Luonan Chen, Alexander R. Pico:
NOA: a cytoscape plugin for network ontology analysis. Bioinform. 29(16): 2066-2067 (2013) - [j60]Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Computational systems biology in the big data era. BMC Syst. Biol. 7(S-2): S1 (2013) - [j59]Zhiyuan Yang, Yan Zhang, Luonan Chen:
Investigation of anti-cancer mechanisms by comparative analysis of naked mole rat and rat. BMC Syst. Biol. 7(S-2): S5 (2013) - [j58]Zhenshu Wen, Zhi-Ping Liu, Zhengrong Liu, Yan Zhang, Luonan Chen:
Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer. J. Am. Medical Informatics Assoc. 20(4): 659-667 (2013) - [j57]Rui Liu, Kazuyuki Aihara, Luonan Chen:
Dynamical network biomarkers for identifying critical transitions and their driving networks of biologic processes. Quant. Biol. 1(2): 105-114 (2013) - [c42]Luonan Chen:
Identifying Critical Transitions of Biological Processes by Dynamical Network Biomarkers. ISBRA 2013: 2 - 2012
- [j56]Xiujun Zhang, Xing-Ming Zhao, Kun He, Le Lu, Yongwei Cao, Jingdong Liu, Jin-Kao Hao, Zhi-Ping Liu, Luonan Chen:
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information. Bioinform. 28(1): 98-104 (2012) - [j55]Keqin Liu, Zhi-Ping Liu, Jin-Kao Hao, Luonan Chen, Xing-Ming Zhao:
Identifying dysregulated pathways in cancers from pathway interaction networks. BMC Bioinform. 13: 126 (2012) - [j54]Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen:
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs. BMC Bioinform. 13(S-7): S6 (2012) - [j53]Hee Lee, Taejeong Bae, Ji-Hyun Lee, Dae Kim, Young Oh, Yeongjun Jang, Ji-Tea Kim, Jong Jun Lee, Alessio Innocenti, Claudiu T. Supuran, Luonan Chen, Kyoohyoung Rho, Sunghoon Kim:
Rational drug repositioning guided by an integrated pharmacological network of protein, disease and drug. BMC Syst. Biol. 6: 80 (2012) - [j52]Yong Wang, Xiang-Sun Zhang, Luonan Chen:
Modelling biological systems from molecules to dynamical networks. BMC Syst. Biol. 6(S-1): S1 (2012) - [j51]Tao Zeng, Luonan Chen:
Tracing dynamic biological processes during phase transition. BMC Syst. Biol. 6(S-1): S12 (2012) - [j50]Guanying Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto:
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats. BMC Syst. Biol. 6(S-1): S2 (2012) - [j49]Tao Zeng, Luonan Chen:
Correction: Tracing dynamic biological processes during phase transition. BMC Syst. Biol. 6(S-1): S23 (2012) - [j48]Xiaoping Liu, Zhi-Ping Liu, Xing-Ming Zhao, Luonan Chen:
Identifying disease genes and module biomarkers by differential interactions. J. Am. Medical Informatics Assoc. 19(2): 241-248 (2012) - [j47]