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2020 – today
- 2023
[j22]Stan Ahalt, Paul Avillach
, Rebecca R. Boyles, Kira Bradford, Steven Cox, Brandi Davis-Dusenbery, Robert L. Grossman, Ashok K. Krishnamurthy, Alisa Manning, Benedict Paten, Anthony Philippakis, Ingrid Borecki, Shu Hui Chen, Jon Kaltman, Sweta Ladwa, Chip Schwartz, Alastair Thomson, Sarah Davis, Alison Leaf, Jessica Lyons, Elizabeth Sheets, Joshua C. Bis, Matthew P. Conomos, Alessandro Culotti, Thomas N. Desain, Jack DiGiovanna, Milan Domazet, Stephanie M. Gogarten, Alba Gutiérrez-Sacristán, Tim Harris, Benjamin D. Heavner, Deepti Jain, Brian O'Connor, Kevin Osborn, Danielle Pillion, Jacob Pleiness, Ken Rice, Garrett Rupp, Arnaud Serret-Larmande, Albert Smith, Jason P. Stedman, Adrienne Stilp, Teresa Barsanti, John B. Cheadle, Christopher Erdmann, Brandy Farlow, Allie Gartland-Gray, Julie Hayes, Hannah Hiles, Paul Kerr, Chris Lenhardt, Tom Madden, Joanna O. Mieczkowska, Amanda Miller, Patrick Patton, Marcie Rathbun, Stephanie Suber, Joe Asare:
Building a collaborative cloud platform to accelerate heart, lung, blood, and sleep research. J. Am. Medical Informatics Assoc. 30(7): 1293-1300 (2023)- [j21]Amelia L. M. Tan, Emily J. Getzen, Meghan R. Hutch, Zachary H. Strasser, Alba Gutiérrez-Sacristán, Trang T. Le, Arianna Dagliati, Michele Morris, David A. Hanauer, Bertrand Moal, Clara-Lea Bonzel, William Yuan, Lorenzo Chiudinelli, Priyam Das, Harrison G. Zhang, Bruce J. Aronow, Paul Avillach, Gabriel A. Brat, Tianxi Cai, Chuan Hong, William G. La Cava, He Hooi Will Loh, Yuan Luo, Shawn N. Murphy, Kee Yuan Hgiam, Gilbert S. Omenn, Lav P. Patel, Malarkodi J. Samayamuthu, Emily R. Shriver, Zahra Shakeri Hossein Abad, Byorn W. L. Tan, Shyam Visweswaran, Xuan Wang, Griffin M. Weber, Zongqi Xia, Bertrand Verdy, Qi Long, Danielle L. Mowery, John H. Holmes:
Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record? J. Biomed. Informatics 139: 104306 (2023) - 2022
- [j20]Alba Gutiérrez-Sacristán, Carlos Sáez, Carlos De Niz, Niloofar Jalali, Thomas N. Desain, Ranjay Kumar, Joany M. Zachariasse, Kathe P. Fox, Nathan P. Palmer, Isaac S. Kohane, Paul Avillach:
Multi-PheWAS intersection approach to identify sex differences across comorbidities in 59 140 pediatric patients with autism spectrum disorder. J. Am. Medical Informatics Assoc. 29(2): 230-238 (2022) - [j19]Doudou Zhou, Ziming Gan, Xu Shi, Alina Patwari, Everett Neil Rush, Clara-Lea Bonzel, Vidul Ayakulangara Panickan, Chuan Hong, Yuk-Lam Ho, Tianrun Cai, Lauren Costa, Xiaoou Li, Victor M. Castro, Shawn N. Murphy, Gabriel A. Brat, Griffin M. Weber, Paul Avillach, J. Michael Gaziano, Kelly Cho, Katherine P. Liao, Junwei Lu, Tianxi Cai:
Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization. J. Biomed. Informatics 133: 104147 (2022) - [j18]Xuan Wang, Harrison G. Zhang, Xin Xiong, Chuan Hong, Griffin M. Weber, Gabriel A. Brat, Clara-Lea Bonzel, Yuan Luo, Rui Duan, Nathan P. Palmer, Meghan R. Hutch, Alba Gutiérrez-Sacristán, Riccardo Bellazzi, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Noelia García-Barrio, Romain Griffier, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Mark S. Keller, Jeffrey G. Klann, Sehi L'Yi, Sara Lozano-Zahonero, Sarah E. Maidlow, Adeline Makoudjou, Alberto Malovini, Bertrand Moal, Jason H. Moore, Michele Morris, Danielle L. Mowery, Shawn N. Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S. Omenn, Lav P. Patel, Miguel Pedrera-Jiménez, Andrea Prunotto, Malarkodi J. Samayamuthu, Fernando J. Sanz Vidorreta, Emily Schriver, Petra Schubert, Pablo Serrano-Balazote, Andrew M. South, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Patric Tippmann, Shyam Visweswaran, Zongqi Xia, William Yuan, Daniela Zöller, Isaac S. Kohane, Paul Avillach, Zijian Guo, Tianxi Cai:
SurvMaximin: Robust federated approach to transporting survival risk prediction models. J. Biomed. Informatics 134: 104176 (2022) - [j17]Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber:
International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine 5 (2022) - 2021
- [j16]Alba Gutiérrez-Sacristán, Carlos De Niz, Cartik Kothari, Sek Won Kong, Kenneth D. Mandl, Paul Avillach:
GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets. Briefings Bioinform. 22(1): 55-65 (2021) - [j15]Alon Geva, Molei Liu, Vidul Ayakulangara Panickan, Paul Avillach, Tianxi Cai, Kenneth D. Mandl:
A high-throughput phenotyping algorithm is portable from adult to pediatric populations. J. Am. Medical Informatics Assoc. 28(6): 1265-1269 (2021) - [j14]Jeffrey G. Klann, Hossein Estiri, Griffin M. Weber, Bertrand Moal, Paul Avillach, Chuan Hong, Amelia L. M. Tan, Brett K. Beaulieu-Jones, Victor M. Castro, Thomas Maulhardt, Alon Geva, Alberto Malovini, Andrew M. South, Shyam Visweswaran, Michele Morris, Malarkodi J. Samayamuthu, Gilbert S. Omenn, Kee Yuan Ngiam, Kenneth D. Mandl, Martin Boeker, Karen L. Olson, Danielle L. Mowery, Robert W. Follett, David A. Hanauer, Riccardo Bellazzi, Jason H. Moore, Ne-Hooi Will Loh, Douglas S. Bell, Kavishwar B. Wagholikar, Luca Chiovato, Valentina Tibollo, Siegbert Rieg, Anthony L. L. J. Li, Vianney Jouhet, Emily Schriver, Zongqi Xia, Meghan Hutch, Yuan Luo, Isaac S. Kohane, Gabriel A. Brat, Shawn N. Murphy:
Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. J. Am. Medical Informatics Assoc. 28(7): 1411-1420 (2021) - [j13]Josephine Yates, Alba Gutiérrez-Sacristán, Vianney Jouhet, Kimberly Leblanc, Cecilia Esteves, Thomas N. Desain, Nick Benik, Jason Stedman, Nathan P. Palmer, Guillaume Mellon, Isaac S. Kohane, Paul Avillach:
Finding commonalities in rare diseases through the undiagnosed diseases network. J. Am. Medical Informatics Assoc. 28(8): 1694-1702 (2021) - 2020
- [j12]Grégoire Versmée, Laura Versmée, Mikaël Dusenne, Niloofar Jalali, Paul Avillach:
dbgap2x: an R package to explore and extract data from the database of Genotypes and Phenotypes (dbGaP). Bioinform. 36(4): 1305-1306 (2020) - [j11]Inès Krissaane, Carlos De Niz, Alba Gutiérrez-Sacristán, Gabor Korodi, Nneka Ede, Ranjay Kumar, Jessica Lyons, Arjun K. Manrai, Chirag J. Patel, Isaac S. Kohane, Paul Avillach:
Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services. J. Am. Medical Informatics Assoc. 27(9): 1425-1430 (2020) - [j10]Gabriel A. Brat, Griffin M. Weber, Nils Gehlenborg, Paul Avillach, Nathan P. Palmer, Luca Chiovato, James J. Cimino, Lemuel R. Waitman, Gilbert S. Omenn, Alberto Malovini, Jason H. Moore, Brett K. Beaulieu-Jones, Valentina Tibollo, Shawn N. Murphy, Sehi L'Yi, Mark S. Keller, Riccardo Bellazzi, David A. Hanauer, Arnaud Serret-Larmande, Alba Gutiérrez-Sacristán, John J. Holmes, Douglas S. Bell, Kenneth D. Mandl, Robert W. Follett, Jeffrey G. Klann, Douglas A. Murad, Luigia Scudeller, Mauro Bucalo, Katie G. Kirchoff, Jean B. Craig, Jihad S. Obeid, Vianney Jouhet, Romain Griffier, Sébastien Cossin, Bertrand Moal, Lav P. Patel, Antonio Bellasi, Hans-Ulrich Prokosch, Detlef Kraska, Piotr Sliz, Amelia L. M. Tan, Kee Yuan Ngiam, Alberto Zambelli, Danielle L. Mowery, Emily Schriver, Batsal Devkota, Robert L. Bradford, Mohamad Daniar, Christel Daniel, Vincent Benoit, Romain Bey, Nicolas Paris, Patricia Serre, Nina Orlova, Julien Dubiel, Martin Hilka, Anne-Sophie Jannot, Stéphane Bréant, Judith Leblanc, Nicolas Griffon, Anita Burgun, Mélodie Bernaux, Arnaud Sandrin, Elisa Salamanca, Sylvie Cormont, Thomas Ganslandt, Tobias Gradinger, Julien Champ, Martin Boeker, Patricia Martel, Loic Estève, Alexandre Gramfort, Olivier Grisel, Damien Leprovost, Thomas Moreau, Gaël Varoquaux, Jill-Jênn Vie, Demian Wassermann, Arthur Mensch, Charlotte Caucheteux, Christian Haverkamp, Guillaume Lemaitre, Silvano Bosari, Ian D. Krantz, Andrew M. South, Tianxi Cai, Isaac S. Kohane:
International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. npj Digit. Medicine 3 (2020) - [c13]Emmanuelle Sylvestre, Guillaume Bouzillé, Michael McDuffie, Emmanuel Chazard, Paul Avillach, Marc Cuggia:
A Semi-Automated Approach for Multilingual Terminology Matching: Mapping the French Version of the ICD-10 to the ICD-10 CM. MIE 2020: 18-22
2010 – 2019
- 2018
- [j9]Alba Gutiérrez-Sacristán, Romain Guedj, Gabor Korodi, Jason Stedman, Laura Inés Furlong, Chirag J. Patel, Isaac S. Kohane, Paul Avillach:
Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. Bioinform. 34(8): 1431-1432 (2018) - [j8]Qiu-Yue Zhong, Elizabeth W. Karlson, Bizu Gelaye, Sean Finan, Paul Avillach, Jordan W. Smoller, Tianxi Cai, Michelle A. Williams:
Screening pregnant women for suicidal behavior in electronic medical records: diagnostic codes vs. clinical notes processed by natural language processing. BMC Medical Informatics Decis. Mak. 18(1): 30:1-30:11 (2018) - [c12]Alon Geva, Jason P. Stedman, Guergana Savova, Chen Lin, Shannon F. Manzi, Paul Avillach, Kenneth D. Mandl:
ADEPT: An End-to-End System for High-Throughput Pharmacovigilance. AMIA 2018 - 2017
- [j7]Anne-Sophie Jannot, Eric Zapletal, Paul Avillach, Marie-France Mamzer, Anita Burgun, Patrice Degoulet:
The Georges Pompidou University Hospital Clinical Data Warehouse: A 8-years follow-up experience. Int. J. Medical Informatics 102: 21-28 (2017) - [c11]Xiaoqian Jiang, Claudiu Farcas, Benedict Paten, Mark Diekhans, Paul Avillach, Wallace Wadge, David Haussler, Lucila Ohno-Machado, Ida Sim:
Count Everything: Secure Count Query Framework Across Big Data Centers. CRI 2017 - [c10]Amrapali Zaveri, Shima Dastgheib, Chunlei Wu, Trish Whetzel, Ruben Verborgh, Paul Avillach, Gabor Korodi, Raymond Terryn, Kathleen M. Jagodnik, Pedro Assis, Michel Dumontier:
smartAPI: Towards a More Intelligent Network of Web APIs. ESWC (2) 2017: 154-169 - [c9]Shima Dastgheib, Trish Whetzel, Amrapali Zaveri, Cyrus Afrasiabi, Pedro Assis, Paul Avillach, Kathleen M. Jagodnik, Gabor Korodi, Marcin Pilarczyk, Jeff de Pons, Stephan C. Schürer, Raymond Terryn, Ruben Verborgh, Chunlei Wu, Michel Dumontier:
The SmartAPI Ecosystem for Making Web APIs FAIR. ISWC (Posters, Demos & Industry Tracks) 2017 - 2016
- [j6]Jessica D. Tenenbaum, Paul Avillach, Marge M. Benham-Hutchins, Matthew K. Breitenstein, Erin L. Crowgey, Mark A. Hoffman, Xia Jiang, Subha Madhavan, John E. Mattison, Radhakrishnan Nagarajan, Bisakha Ray, Dmitriy Shin, Shyam Visweswaran, Zhongming Zhao, Robert R. Freimuth:
An informatics research agenda to support precision medicine: seven key areas. J. Am. Medical Informatics Assoc. 23(4): 791-795 (2016) - 2015
- [j5]Vincent Canuel, Bastien Rance, Paul Avillach, Patrice Degoulet, Anita Burgun:
Translational research platforms integrating clinical and omics data: a review of publicly available solutions. Briefings Bioinform. 16(2): 280-290 (2015) - 2014
- [c8]Shawn N. Murphy, Riccardo Bellazzi, Matteo Gabetta, Paul Avillach, Lori C. Phillips:
Handling Clinical and Next Generation Sequencing data: new strategies in i2b2 and tranSMART. AMIA 2014 - 2013
- [j4]Paul Avillach, Preciosa M. Coloma, Rosa Gini, Martijn J. Schuemie, Fleur Mougin, Jean-Charles Dufour, Giampiero Mazzaglia, Carlo Giaquinto, Carla Fornari, Ron Herings, Mariam Molokhia, Lars Pedersen, Annie Fourrier-Réglat, Marius Fieschi, Miriam C. J. M. Sturkenboom, Johan van der Lei, Antoine Pariente, Gianluca Trifirò:
Harmonization process for the identification of medical events in eight European healthcare databases: the experience from the EU-ADR project. J. Am. Medical Informatics Assoc. 20(1): 184-192 (2013) - [j3]Paul Avillach, Jean-Charles Dufour, Gayo Diallo, Francesco Salvo, Michel Joubert, Frantz Thiessard, Fleur Mougin, Gianluca Trifirò, Annie Fourrier-Réglat, Antoine Pariente, Marius Fieschi:
Design and validation of an automated method to detect known adverse drug reactions in MEDLINE: a contribution from the EU-ADR project. J. Am. Medical Informatics Assoc. 20(3): 446-452 (2013) - [j2]Antoine Neuraz, Laurent Chouchana, Georgia Malamut, Christine Le Beller, Denis Roche, Philippe Beaune, Patrice Degoulet, Anita Burgun, Marie-Anne Loriot, Paul Avillach:
Phenome-Wide Association Studies on a Quantitative Trait: Application to TPMT Enzyme Activity and Thiopurine Therapy in Pharmacogenomics. PLoS Comput. Biol. 9(12) (2013) - [c7]Dimitar Hristovski, Anita Burgun-Parenthoine, Paul Avillach, Thomas C. Rindflesch:
Preliminary Evaluation of a Literature-based Discovery Method for Explaining Drug Adverse Effects. AMIA 2013 - 2012
- [j1]Anna Bauer-Mehren, Erik M. van Mulligen, Paul Avillach, María del Carmen Carrascosa, Ricard García-Serna, Janet Piñero González, Bharat Singh, Pedro Lopes, José Luís Oliveira, Gayo Diallo, Ernst Ahlberg Helgee, Scott Boyer, Jordi Mestres, Ferran Sanz, Jan A. Kors, Laura Inés Furlong:
Automatic Filtering and Substantiation of Drug Safety Signals. PLoS Comput. Biol. 8(4) (2012) - [c6]Dimitar Hristovski, Anita Burgun, Paul Avillach, Thomas C. Rindflesch:
Using Literature-based Discovery to Explain Drug Adverse Effects. AMIA 2012 - 2010
- [c5]Paul Avillach, Michel Joubert, Frantz Thiessard, Gianluca Trifirò, Jean-Charles Dufour, Antoine Pariente, Fleur Mougin, Giovanni Polimeni, Maria Antonietta Catania, Carlo Giaquinto, Giampiero Mazzaglia, Carla Fornari, Ron Herings, Rosa Gini, Julia Hippisley-Cox, Mariam Molokhia, Lars Pedersen, Annie Fourrier-Réglat, Miriam C. J. M. Sturkenboom, Marius Fieschi:
Design and evaluation of a semantic approach for the homogeneous identification of events in eight patient databases: a contribution to the European EU-ADR project. MedInfo 2010: 1085-1089
2000 – 2009
- 2009
- [c4]Paul Avillach, Fleur Mougin, Michel Joubert, Frantz Thiessard, Antoine Pariente, Jean-Charles Dufour, Gianluca Trifirò, Giovanni Polimeni, Maria Antonietta Catania, Carlo Giaquinto, Giampiero Mazzaglia, Gianluca Baio, Ron Herings, Rosa Gini, Julia Hippisley-Cox, Mariam Molokhia, Lars Pedersen, Annie Fourrier-Réglat, Miriam C. J. M. Sturkenboom, Marius Fieschi:
A Semantic Approach for the Homogeneous Identification of Events in Eight Patient Databases: A Contribution to the European eu-ADR Project. MIE 2009: 190-194 - 2008
- [c3]Michel Joubert, Stéfan Jacques Darmoni, Paul Avillach, Badisse Dahamna, Marius Fieschi:
Using Knowledge for Indexing Health Web Resources in a Quality-Controlled Gateway. MIE 2008: 205-210 - 2007
- [c2]Paul Avillach, Michel Joubert, Marius Fieschi:
A Model for Indexing Medical Documents Combining Statistical and Symbolic Knowledge. AMIA 2007 - [c1]Catherine Quantin, François-André Allaert, Paul Avillach, Benoît Riandey, Marius Fieschi, Maniane Fassa, Olivier Cohen:
Proposal of a French Health Identification Number Interoperable at the European Level. MedInfo 2007: 503-507
Coauthor Index
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