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2020 – today
- 2023
[j10]Mona Nourbakhsh
, Astrid Saksager, Nikola Tom, Xi Steven Chen, Antonio Colaprico, Catharina Olsen, Matteo Tiberti, Elena Papaleo:
A workflow to study mechanistic indicators for driver gene prediction with Moonlight. Briefings Bioinform. 24(5) (2023)- [j9]Laura D. T. Vo Ngoc, Randy Osei, Katrin Dohr, Catharina Olsen, Sara Seneca, Alexander Gheldof:
EDIR: exome database of interspersed repeats. Bioinform. 39(1) (2023)
2010 – 2019
- 2019
- [j8]Mohamed Mounir, Marta Lucchetta, Tiago Chedraoui Silva, Catharina Olsen, Gianluca Bontempi, Xi Chen, Houtan Noushmehr, Antonio Colaprico, Elena Papaleo:
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx. PLoS Comput. Biol. 15(3) (2019) - 2018
- [i2]Tiago Chedraoui Silva, Antonio Colaprico, Catharina Olsen, Tathiane M. Malta, Gianluca Bontempi, Michele Ceccarelli, Benjamin P. Berman, Houtan Noushmehr:
TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data. F1000Research 7: 439 (2018) - 2016
- [j7]Petr Smirnov, Zhaleh Safikhani, Nehme Hachem, Dong Wang, Adrian She, Catharina Olsen, Mark Freeman, Heather Marie Selby, Deena M. A. Gendoo, Patrick Grossmann, Andrew H. Beck, Hugo J. W. L. Aerts, Mathieu Lupien, Anna Goldenberg, Benjamin Haibe-Kains:
PharmacoGx: an R package for analysis of large pharmacogenomic datasets. Bioinform. 32(8): 1244-1246 (2016) - [i1]Tiago Chedraoui Silva, Antonio Colaprico, Catharina Olsen, Fulvio D'Angelo, Gianluca Bontempi, Michele Ceccarelli, Houtan Noushmehr:
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages. F1000Research 5: 1542 (2016) - 2015
- [j6]Pau Bellot, Catharina Olsen, Philippe Salembier, Albert Oliveras-Vergés, Patrick E. Meyer:
NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference. BMC Bioinform. 16: 312:1-312:15 (2015) - 2013
- [j5]Nicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Nehme Hachem, Gianluca Bontempi, Benjamin Haibe-Kains:
mRMRe: an R package for parallelized mRMR ensemble feature selection. Bioinform. 29(18): 2365-2368 (2013) - [j4]Simon Papillon-Cavanagh, Nicolas De Jay, Nehme Hachem, Catharina Olsen, Gianluca Bontempi, Hugo J. W. L. Aerts, John Quackenbush, Benjamin Haibe-Kains:
Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity. J. Am. Medical Informatics Assoc. 20(4): 597-602 (2013) - 2012
- [j3]Benjamin Haibe-Kains, Catharina Olsen, Amira Djebbari, Gianluca Bontempi, Mick Correll, Christopher Bouton, John Quackenbush:
Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks. Nucleic Acids Res. 40(Database-Issue): 866-875 (2012) - 2011
- [j2]Abhilash Alexander Miranda, Catharina Olsen, Gianluca Bontempi:
Fourier spectral factor model for prediction of multidimensional signals. Signal Process. 91(9): 2172-2177 (2011)
2000 – 2009
- 2009
- [j1]Catharina Olsen, Patrick E. Meyer, Gianluca Bontempi:
On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information. EURASIP J. Bioinform. Syst. Biol. 2009 (2009)
Coauthor Index
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