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BIBM 2013: Shanghai, China
- Guo-Zheng Li, Sunghoon Kim, Michael Hughes, Geoffrey J. McLachlan, Hongye Sun, Xiaohua Hu, Habtom W. Ressom, Baoyan Liu, Michael N. Liebman:
2013 IEEE International Conference on Bioinformatics and Biomedicine, Shanghai, China, December 18-21, 2013. IEEE Computer Society 2013, ISBN 978-1-4799-1309-1 - Junbo Duan, Mingxi Wan, Hong-Wen Deng, Yu-Ping Wang:
Modeling exome sequencing data with generalized Gaussian distribution with application to copy number variation detection. 1-7 - Weixiang Liu, Tianfu Wang
, Siping Chen:
Regularized nonnegative matrix factorization for clustering gene expression data. 1-4 - Jun Ren, Jianxin Wang, Min Li:
A clustering algorithm for identifying hierarchical and overlapping protein complexes in large PPI networks. 1-2 - Shuju Bai, Ebrahim Khosravi, Seung-Jong Park:
An MPI-enabled MapReduce framework for molecular dynamics simulation applications. 1-3 - Edgar A. Ospina Granados, Luis Fernando Niño Vasquez, Humberto Arboleda Granados:
Characterizing genetic interactions using a machine learning approach in Colombian patients with Alzheimer's disease. 1-2 - Kegang Cao, Caihong Fu, Huanqin Li, Xiyan Xin, Ying Gao:
A novel prognostic model to predict the recovery of ischemie stroke patients. 1-2 - TaeJin Ahn, Taesung Park:
Pathway based identification of rare mutation effect in cancer. 1-6 - Keith C. C. Chan:
Big data analytics for drug discovery. 1 - Mingxin Gan, Rui Jiang
:
Inferring semantic similarity through correlating information contents of gene ontology terms. 1-5 - Yilan Bai, Greg Speegle, Young-Rae Cho:
Signaling pathway prediction by path frequency in protein-protein interaction networks. 1-8 - Ju Han Kim:
Yin and Yang of reciprocally scale-free biological networks between disease genes and death genes. 2 - Xiujuan Lei, Jianfang Tian, Fang-Xiang Wu
:
PPI modules detection method through ABC-IFC algorithm. 3 - Ying Xu:
Elucidation of drivers for cancer initiation and metastasis: A data-mining approach. 3 - Hoon Jin:
Intrinsic features of biomedicai document for the efficient single document summarization. 3-4 - Lixing Cao, Yuanyuan Ma:
Bibliometrics in syndrome distribution of anovulatory dysfunctional uterine bleeding. 3-6 - Ayush Bansal, Sunil Kumar, Mukesh Kr. Agrawal, Mithun M. Nayak, Ranga V. Narayanan:
Detecting critical cardiac events with 12 lead ECG data. 4-6 - Xuejuan Li, Shital K. Mishra, Min Wu, Fan Zhang, Jie Zheng:
Syn-Lethality: An integrative knowledge base of synthetic lethality towards discovery of selective anticancer therapies. 4 - Wen Zhang
, Juan Liu, Yi Xiong, Meng Ke, Ke Zhang:
Predicting immunogenic T-cell epitopes by combining various sequence-derived features. 4-9 - Yongguo Mei, Raquel Hontecillas, Xiaoying Zhang, Adria Carbo, Josep Bassaganya-Riera:
Neural network models for classifying immune cell subsets. 5-11 - Min Li, Weijie Chen, Jianxin Wang, Fang-Xiang Wu, Yi Pan:
Identifying dynamic protein complexes based on gene expression profiles and PPI networks. 5 - Siddhartha Jonnalagadda, Soheil Moosavinasab, Dingcheng Li, Martin D. Abel, Christopher G. Chute, Hongfang Liu:
Prioritizing journals relevant to a topic for addressing clinicians' information needs. 5-6 - Xiwei Tang, Jianxin Wang, Min Li, Yiming He, Yi Pan
:
A novel algorithm for mining protein complex from the weighted network. 6 - Hui Li, Chunmei Liu:
Prediction of protein structures using a map-reduce Hadoop framework based simulated annealing algorithm. 6-10 - Wen-Yang Lin, Chiao-Feng Lo:
Co-training and ensemble based duplicate detection in adverse drug event reporting systems. 7-8 - Dacan Chen, Wei Zhao, Junfeng Liu, Qing Wu, Xiu-Mei Mo, Jian-Ke Pan, Rui-Qiang Fan, Hong-Yi Li, Lie-Hui Liao, Zhao-hui Liang:
Mutual information mining for component law and development of new recipes of topical herbs for atopic dermatitis. 7-8 - Hongfei Cao, Jing Ginger Han, Chi-Ren Shyu:
Object behavior mining from mitochondiral shape databases for degenerated nerve disease studies. 7-9 - Mohammed A. Gaafar, Noha A. Yousri
, Mohamed A. Ismail:
Studying the robustness of ensembles of classifiers used for cancer diagnosis using microarrays datasets. 7-13 - Fengfeng Wang
, Lawrence Wing-Chi Chan, Helen K. W. Law, Cesar Wong
, Shea-Ping Yip
, Benjamin Y. M. Yung
, William C. S. Cho:
In-silico analysis of EGFR-associated microRNA signature in cancer. 7-12 - Gabriel S. S. de Oliveira, Edward de Oliveira Ribeiro, Diogo A. Ferreira, Aletéia P. F. Araújo
, Maristela T. Holanda
, Maria Emília M. T. Walter
:
ACOsched: A scheduling algorithm in a federated cloud infrastructure for bioinformatics applications. 8-14 - Yizong Cheng, Chen Lu, Nan Wang:
Local k-core clustering for gene networks. 9-15 - Jiang Bian, Mengjun Xie
, Umit Topaloglu, Teresa Hudson, William R. Hogan
:
Understanding biomedicai research collaborations through social network analysis: A case study. 9-16 - Benyuan Liu
, Zhilin Zhang, Hongqi Fan, Qiang Fu:
Compression via compressive sensing: A low-power framework for the telemonitoring of multi-channel physiological signals. 9-12 - Dongdong Lin, Hao He, Jingyao Li, Hong-Wen Deng, Vince D. Calhoun
, Yu-Ping Wang:
Network-based investigation of genetic modules associated with functional brain networks in schizophrenia. 9-16 - Shengye Chen, Xu Wu, Chunyan Liu, Wenbin Fu
, Zhihuan Pan:
Discussion about traditional Chinese medicine causes, pathogenesis and distribution of syndromes of primary dysmenorrhea among female college students based on questionnaire investigation. 9-14 - Haiyun Chen, Yingyu Hu, Haizhou Wang, Zhe Li, Qiang Lin:
Evaluation of Lauge-Hansen classification for ankle fractures and follow-up management. 10-12 - Lijun Quan, Haiou Li, Xiaoyan Xia, Qiang Li:
Packing protein side-chains by parallel ant colonies. 10-16 - Timothy G. Lilburn, Hong Cai, Jianying Gu, Zhan Zhou
, Yufeng Wang:
Network analysis reveals complex interactions in heat shock response in the malaria parasite. 11-16 - Amandeep S. Sidhu
, Suresh Reuben Balakrishnan, Sarinder Kaur Dhillon:
HPC+Azure environment for bioinformatics applications. 12-15 - Haiyun Chen, Yingyu Hu, Zhe Li, Wanxi Deng, Yi Liu, Qiang Lin, Zehui He:
Application of critical condition scoring scale of traditional Chinese medicine in predicting operative risks for elder patients with orthopedic surgery. 13-15 - Saeed Mohajeri, Afsaneh Esteki, Osmar R. Zaïane, Davood Rafiei:
Innovative navigation of health discussion forums based on relationship extraction and medical ontologies. 13-14 - Hyunsoo Kim, Jeff Chuang, Markus Bredel:
Tumor subtype identification with weighted sparse non-negative matrix factorization for multiple heterogeneous data integration. 14-18 - Shuhui Chen, Xiuli Xie, Zhao Zeng, JingJie Yu, Chuanjian Lu:
Study of the regularities in the treatment of psoriasis vulgaris by TCM: Applying association rule mining to TCM literature. 15-17 - Rodrigo Pinheiro, Maristela Holanda
, Aletéia P. F. Araújo
, Maria Emília Telles Walter
, Sérgio Lifschitz
:
Automatic capture of provenance data in genome project workflows. 15-20 - Juyoung Park, Kuyeon Lee, Kyungtae Kang:
Arrhythmia detection from heartbeat using k-nearest neighbor classifier. 15-22 - Xi Chen, Jianhua Xuan, Xu Shi
, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke
:
A novel statistical approach to identify co-regulatory gene modules. 16-18 - Yong Tan, Cheng Lu, Miao Jiang
, Li Li, Xiaojuan He, Xuejie Han, Aiping Lu, Jian Li:
Understanding synergetic activities of Fuzi-Dahuang herb pairs based on network pharmacology. 16-21 - Minkun Wang, Guoqiang Yu, Yehia Mechref
, Habtom W. Ressom:
GPA: An algorithm for LC/MS based glycan profile annotation. 16-22 - Seyed Mehdi Moghadas, Won-Sook Lee:
A 3D segmentation framework for an accurate extraction of the spongy and cortical bones from the MRI data. 17-21 - Jason M. Whyte
:
Inferring global a priori identifiability of optical biosensor experiment models. 17-22 - Zeineb Dhouioui, Jalel Akaichi
:
Overlapping community detection in social networks. 17-23 - Dongfang Nan, Xiaolong Zhang:
Prediction of hot regions in protein-protein interactions based on complex network and community detection. 17-23 - Chen Zhaoxue:
Novel discovery on mathematical relationship of five elements of containing notes and Fibonacci modular sequence. 18-19 - Shaoyang Cui, Mingzhu Xu, Shuhui Wang, Chunzhi Tang, Xinsheng Lai, Zhiqi Fan:
Antihypertensive effect of acupuncturing at KI3 in spontaneously hypertensive rats. 19-25 - Mingzhu Sun, Geoffrey J. McLachlan
:
A common factor-analytic model for classification. 19-24 - Na Chu, Zhiying Che, Min Zhou, Yu Zhao, Lizhuang Ma:
An intelligent diagnosis method for Chronis hepatitis B in TCM. 20-22 - Shao-Wu Zhang, Fei Liu, Ze-Gang Wei, Wei Chen, Chen Zhou:
Detecting seasonal marine microbial communities with symmetrical non-negative matrix factorization. 21-26 - Tuan D. Pham:
The chaotic behavior of the endoplasmic-reticulum network in time-lapse microscopy images. 22-25 - Young Joon Yoo, Tushar Sandhan, Jin Young Choi, Sun Kim:
Towards simultaneous clustering and motif-modeling for a large number of protein family. 22-28 - Mingon Kang, Shuo Li, Chunyu Liu, Jean Gao:
eQTL epistasis: Detecting complex interaction effects between multiple loci from eQTL data. 23-28 - Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute:
Mining drug-drug interaction patterns from linked data: A case study for Warfarin, Clopidogrel, and Simvastatin. 23-30 - Yunchao Yin, Daren Zheng, Jianting Cao, Toshihisa Tanaka:
Dynamic approximate entropy with band filtering for patient's EEG consciousness analysis. 23-26 - Chuan Zou, Ying Tang, Li Bai, Yuqun Zeng, Fuhua Lu:
Application of clustering analysis to explore syndrome evolution law of peritoneal dialysis patients. 23-26 - Dusan Popovic, Alejandro Sifrim
, Yves Moreau
, Bart De Moor:
eXtasy simplified-towards opening the black box. 24-28 - Wassim Drira, Eric Renault, Djamal Zeghlache
:
Towards a secure social sensor network. 24-29 - Lemin Xiao, Kaizhi Tang, Xiong Liu
, Hui Yang, Zheng Chen, Roger Xu:
Information extraction from nanotoxicity related publications. 25-30 - Jeremiah J. Shepherd, Lingxi Zhou, Yan Zhang, W. Jim Zheng, Jijun Tang:
Exploring genomes with a game engine. 26-30 - Yunfeng Dai, Yingrong Lao, Guofeng Xu, Yuanshen Zhou, Liheng Guo, Liu Qi, Xiaolan Yin, Shuang Yang, Yongzhu Liang, Meiyan Deng, Leyan Deng, Minzhou Zhang:
The research for digitalization of four great classical literatures of traditional Chinese medicine knowledge for clinic use. 26 - Hiroshi Dozono, Gen Niina:
Visualization of the sets of DNA sequences using self organizing maps based on correlation coefficients. 27-29 - Yukun Zhong, Liao Gang, Longfei Ma, Zeng Yu:
Method to accelerate prediction of membrane protein types by CUDA. 27-32 - Lizhi Cui, Josiah Poon, Simon K. Poon, Kei Fan, Hao Chen, Junbin Gao
, Paul Wing Hing Kwan
, Zhihao Ling:
Parallel model of independent component analysis constrained by reference curves for HPLC-DAD and its solution by multi-areas genetic algorithm. 27-28 - Zhong Di, Xianming Lin, Shuo Jiang:
Acupuncture for tension-type headache: An assessment of clinical reporting quality based on OCSI, STROBE statement and quality assessment for case series. 29-30 - Yuan Zhang, Nan Du, Kang Li, Jinchao Feng, Kebin Jia, Aidong Zhang:
Critical protein detection in dynamic PPI networks with multi-source integrated deep belief nets. 29-36 - Dong Sui, Kuanquan Wang, Yue Zhang, Henggui Zhang:
A novel seeding method based on spatial sliding volume filter for neuron reconstruction. 29-34 - Suping Deng, Jing-Hua Yuan, Deshuang Huang, Zhen Wang:
SFAPS: An R package for structure/function analysis of protein sequences based on informational spectrum method. 29-34 - Chu-Cheng Kuo, Fang-Chi Yang, Meng-Han Yang, Ding-Dar Lee:
Predicting the onset of bullous pemphigoid with co-morbidities: A survey based on a nationwide medical database. 30-37 - Mario Cannataro
, Pietro Hiram Guzzi, Pierangelo Veltri
:
Using open data in health care and tourism. 30-33 - Hui Yang
, Soundar R. T. Kumara, Kaizhi Tang, Xiong Liu
, Lemin Xiao, Roger Xu:
A user centered approach to developing information visualization module for NEIMiner. 31-36 - Zhong Di, Yayuan Yang, Qiaohui Fu, Xianming Lin, Shuo Jiang:
The application characteristics of acupoints of acupuncture for tension-type headache: An literature research based on Data-Mining Apriori algorithm. 31-35 - Shoji Hirano, Shusaku Tsumoto:
Cluster analysis of treatment processes based on the typicalness measure for building clinical pathways. 31-32 - Chenbing Sun, Yimin Bao, Jiatuo Xu, Deqi Kong, Hong Zhou, Qi Wang, Huiliang Shang, Wenxin Wang, Min-Min Jin, Xu Wang, Ye Duan:
The effects of different types of music on electroencephalogram. 31-37 - Yan Tang, Hongyan Li, Feifei Li, Lilue Fan:
An effective method to analyze variations of high-dimensional patterns over medical streams. 33-39 - Hai-Ying Yao, Hui-Shao Zhu, Bin Li, Chunyan Liang, Wen-Guang Zhao, Zhaoxi Chen, Yubo Zhang:
Dialectical analysis of spectral data of patients with hepatocellular jaundice through data mining techniques. 34 - Bin Pang, David Schlessman, Xingyan Kuang, Nan Zhao, Daniel Shyu, Dmitry Korkin, Chi-Ren Shyu:
PBSalign: Sequence-independent local alignment of protein binding sites. 35-42 - Shibiao Wan
, Man-Wai Mak, Bai Zhang, Yue Joseph Wang, Sun-Yuan Kung:
An ensemble classifier with random projection for predicting multi-label protein subcellular localization. 35-42 - Peng Hao, Jintao Zhang, Jun Huan:
A new on-line chemical biology data visualization system. 35-37 - Hui Yang
, Soundar R. T. Kumara, Kaizhi Tang, Xiong Liu
, Zheng Chen, Roger Xu:
Investigating nanomaterial toxicity bibliography: A network analysis approach. 37-42 - Xiaonian He, Weixiang Liu, Siping Chen, Zhengdi Qin:
Application on space-time coding technology in ultrasonic back-propagation method. 38-40 - Xi Wen, Hong Wang, Weiming Zhai:
Medical image based 3D reconstruction and preoperative surgery-planning for microwave ablation. 38-42 - Cong-Ying Liu, Wen Li:
Study on the pressure methods of pulse detecting instrument. 38-42 - Zhi-Qi Fanning Wang, Shu-hui Wang, Wenbin Fu
, Zhi-Shun Liu, Shao-Yang Cui:
System evaluation of electro-acupuncture (EA) for functional constipation. 40-47 - Mostafa Uddin, Ajay Gupta, Kurt Maly, Tamer Nadeem
, Sandip Godambe, Arno Zaritsky:
SmartSpaghetti: Use of smart devices to solve health care problems. 40-45 - Peilin Jia, Zhongming Zhao:
Network-based mutation analysis of putative cancer genes from next-generation sequencing data. 41 - Trupti Joshi, Michael R. Fitzpatrick, Shiyuan Chen, Yang Liu, Hongxin Zhang, Ryan Z. Endacott, Eric C. Gaudiello, Gary Stacey, Henry T. Nguyen, Dong Xu:
Soybean knowledge base (SoyKB): Bridging the gap between soybean translational genomics and breeding. 42-44 - Wei Zhao, Justin Dauwels, Jianshu Cao:
Computational synchronization improves the consistency of gene expression patterns over multiple experiments. 43-46 - Haiying Wang
, Huiru Zheng
, Francisco Azuaje:
Detection of protein complexes in protein interaction networks is improved through network-driven functional homogeneity analysis. 43-48 - Jong Cheol Jeong, Xue-wen Chen:
Evaluating topology-based metrics for GO term similarity measures. 43-48 - Emad A. Mohammed, Behrouz H. Far, Mostafa M. A. Mohamed, Christopher Naugler:
Automatic working area localization in blood smear microscopic images using machine learning algorithms. 43-50 - Kan Li, Fengjiao Chen:
Detecting core protein complexes based on link patterns. 45 - Liwei Wang, Hongfang Liu:
Profiling adverse drug events of cancer drug ingredients using normalized AERS data. 46-52 - Kan Li, Yin Pang:
Communities analysis in protein-protein interaction networks. 46 - Jai-Hao Li, Wen-Hao Chang
, Min-Haw Wang:
Analysis of electrode shape effect on single HeLa cell impedance using COMSOL simulation. 47 - Haiou Li, Qiang Lü, Rong Chen, Lijun Quan, Xiaoyan Xia:
A protein-peptide docking program with modeling receptor flexible areas. 48-50 - Hongmei Zhou, Jinrui Guo, Xiaoxia Ren, Rongfen Dong, Jinrong Zhang, Zhaoli Cui, Na Ge, Yong Tan, Aiping Lu, Miao Jiang
, Yahong Wang, Yaoxian Wang, Guang Zheng, Hongtao Guo:
Rules of traditional physical therapies in treating hypertension through text mining. 48-51 - Saravanan Vijayakumar
, P. T. V. Lakshmi:
A fuzzy inference system for predicting allergenicity and allergic cross-reactivity in proteins. 49-52 - Yue Zhang, Kuanquan Wang, Yongfeng Yuan, Dong Sui, Henggui Zhang:
Stability and bifurcation analysis of Hodgkin-Huxley model. 49-54 - Wen-Yang Lin, Duan-Chun Yang:
On privacy-preserving publishing of spontaneous ADE reporting data. 51-53 - Arshad Muhammad Mehar, Kenan M. Matawie
, Anthony J. Maeder
:
Determining an optimal value of K in K-means clustering. 51-55 - Jun-feng Yan, Hou-wu Gong, Jin-hua Lu, Jinyang Li:
The investigation of laws underlying association rules of treating coronary heart disease which by famous old TCM doctor Wang Xing-kuan. 52-55 - Mengjun Xie
, Umit Topaloglu, Thomas Powell, Chao Peng, Jiang Bian:
SIM: A smartphone-based identity management framework and its application to Arkansas trauma image repository. 53-60 - Peng Li, Xiaohua Hu, Tingting He, Junmin Zhao, Ming Zhang, Xianjun Shen:
Mining protein complexes based on connected affinity clique extension. 53-56 - Yajie Liu, Shujun Xu, Wenbin Fu
:
A curative effect observation on Tianjiu therapy for insomnia. 54-56 - Pei-Yuan Zhou
, En-Shiun Annie Lee, Andrew K. C. Wong:
Regrouping of pattern clusters to reveal characteristics of distinct classes and related classes. 55-61 - Zhi-lin Gu, Xin Qian, Jie-bin Zhu, Zhen-hua Xu:
Comparative study about bone proportional measurement on abdomen and Finger-cun measurement. 56-60 - Yixiang Shi, Ajun Wan, Yifei Shi:
Simulation study of the drug release dynamics. 56 - Pramod K. Pandey, Michelle L. Soupir
:
Assessing dairy manure pathogen indicator inactivation under anaerobic and aerobic digestions in mesophilic temperature. 57-59