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2020 – today
- 2022
[j45]Zhuohang Yu, Zengrui Wu
, Weihua Li, Guixia Liu, Yun Tang:
ADENet: a novel network-based inference method for prediction of drug adverse events. Briefings Bioinform. 23(2) (2022)- [j44]Yimeng Wang, Yaxin Gu, Chaofeng Lou, Yuning Gong, Zengrui Wu, Weihua Li, Yun Tang, Guixia Liu:
A multitask GNN-based interpretable model for discovery of selective JAK inhibitors. J. Cheminformatics 14(1): 16 (2022) - [j43]Mengting Huang, Chaofeng Lou, Zengrui Wu, Weihua Li, Philip W. Lee, Yun Tang, Guixia Liu:
In silico prediction of UGT-mediated metabolism in drug-like molecules via graph neural network. J. Cheminformatics 14(1): 46 (2022) - [j42]Dongping Li, Kexin Jiang, Dan Teng, Zengrui Wu, Weihua Li, Yun Tang, Rui Wang, Guixia Liu:
Discovery of New Estrogen-Related Receptor α Agonists via a Combination Strategy Based on Shape Screening and Ensemble Docking. J. Chem. Inf. Model. 62(3): 486-497 (2022) - [j41]Chaofeng Lou, Hongbin Yang, Jiye Wang, Mengting Huang, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang:
IDL-PPBopt: A Strategy for Prediction and Optimization of Human Plasma Protein Binding of Compounds via an Interpretable Deep Learning Method. J. Chem. Inf. Model. 62(11): 2788-2799 (2022) - [i1]Mingrui Ma, Lei Song, Yuanbo Xu, Guixia Liu:
Symmetric Transformer-based Network for Unsupervised Image Registration. CoRR abs/2204.13575 (2022) - 2021
- [j40]Yayuan Peng, Manjiong Wang, Yixiang Xu, Zengrui Wu, Jiye Wang, Chao Zhang, Guixia Liu, Weihua Li, Jian Li, Yun Tang:
Drug repositioning by prediction of drug's anatomical therapeutic chemical code via network-based inference approaches. Briefings Bioinform. 22(2): 2058-2072 (2021) - [j39]Zhuohang Yu, Zengrui Wu, Weihua Li, Guixia Liu, Yun Tang:
MetaADEDB 2.0: a comprehensive database on adverse drug events. Bioinform. 37(15): 2221-2222 (2021) - [j38]Jiye Wang, Zengrui Wu, Yayuan Peng, Weihua Li, Guixia Liu, Yun Tang:
Pathway-Based Drug Repurposing with DPNetinfer: A Method to Predict Drug-Pathway Associations via Network-Based Approaches. J. Chem. Inf. Model. 61(5): 2475-2485 (2021) - [j37]Zengrui Wu, Qiaohui Wang, Hongbin Yang, Jiye Wang, Weihua Li, Guixia Liu, Yi Yang, Yuzheng Zhao, Yun Tang:
Discovery of Natural Products Targeting NQO1 via an Approach Combining Network-Based Inference and Identification of Privileged Substructures. J. Chem. Inf. Model. 61(5): 2486-2498 (2021) - [j36]Lulu Zheng, Bin Zhu, Zengrui Wu, Fang Liang, Minghuang Hong, Guixia Liu, Weihua Li, Guobin Ren, Yun Tang:
SMINBR: An Integrated Network and Chemoinformatics Tool Specialized for Prediction of Two-Component Crystal Formation. J. Chem. Inf. Model. 61(9): 4290-4302 (2021) - [j35]Ping Zhang, Guixia Liu, Wanfu Gao, Jiazhi Song:
Multi-label feature selection considering label supplementation. Pattern Recognit. 120: 108137 (2021) - 2020
- [j34]Jiazhi Song, Yanchun Liang, Guixia Liu, Rongquan Wang, Liyan Sun, Ping Zhang:
A Novel Prediction Method for ATP-Binding Sites From Protein Primary Sequences Based on Fusion of Deep Convolutional Neural Network and Ensemble Learning. IEEE Access 8: 21485-21495 (2020) - [j33]Liyan Sun, Guixia Liu, Rongquan Wang:
SHEIB-AGM: A Novel Stochastic Approach for Detecting High-Order Epistatic Interactions Using Bioinformation With Automatic Gene Matrix in Genome-Wide Association Studies. IEEE Access 8: 21676-21693 (2020) - [j32]Rongquan Wang, Caixia Wang, Guixia Liu:
A novel graph clustering method with a greedy heuristic search algorithm for mining protein complexes from dynamic and static PPI networks. Inf. Sci. 522: 275-298 (2020) - [j31]Yue Chen, Junhao Li, Zengrui Wu, Guixia Liu, Honglin Li, Yun Tang, Weihua Li:
Computational Insight into the Allosteric Activation Mechanism of Farnesoid X Receptor. J. Chem. Inf. Model. 60(3): 1540-1550 (2020) - [j30]Dan Teng, Jianhui Chen, Dongping Li, Zengrui Wu, Weihua Li, Yun Tang, Guixia Liu:
Computational Insights into Molecular Activation and Positive Cooperative Mechanisms of FFAR1 Modulators. J. Chem. Inf. Model. 60(6): 3214-3230 (2020) - [j29]Zengrui Wu, Yayuan Peng, Zhuohang Yu, Weihua Li, Guixia Liu, Yun Tang:
NetInfer: A Web Server for Prediction of Targets and Therapeutic and Adverse Effects via Network-Based Inference Methods. J. Chem. Inf. Model. 60(8): 3687-3691 (2020)
2010 – 2019
- 2019
- [j28]Hongbin Yang, Chaofeng Lou, Lixia Sun, Jie Li, Yingchun Cai, Zhuang Wang, Weihua Li, Guixia Liu, Yun Tang:
admetSAR 2.0: web-service for prediction and optimization of chemical ADMET properties. Bioinform. 35(6): 1067-1069 (2019) - [j27]Rongquan Wang, Guixia Liu, Caixia Wang:
Identifying protein complexes based on an edge weight algorithm and core-attachment structure. BMC Bioinform. 20(1): 471:1-471:20 (2019) - [j26]Lixia Sun, Hongbin Yang, Yingchun Cai, Weihua Li, Guixia Liu, Yun Tang:
In Silico Prediction of Endocrine Disrupting Chemicals Using Single-Label and Multilabel Models. J. Chem. Inf. Model. 59(3): 973-982 (2019) - [j25]Yingchun Cai, Hongbin Yang, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang:
Computational Prediction of Site of Metabolism for UGT-Catalyzed Reactions. J. Chem. Inf. Model. 59(3): 1085-1095 (2019) - [j24]Feixiong Cheng, Weihua Li, Yadi Zhou, Jie Shen, Zengrui Wu, Guixia Liu, Philip W. Lee, Yun Tang:
Correction to "admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties". J. Chem. Inf. Model. 59(11): 4959 (2019) - [j23]Ping Zhang, Guixia Liu, Wanfu Gao:
Distinguishing two types of labels for multi-label feature selection. Pattern Recognit. 95: 72-82 (2019) - [j22]Xinzhe Xiao, Zehui Chen, Zengrui Wu, Tianduanyi Wang, Weihua Li, Guixia Liu, Bo Zhang, Yun Tang:
Insights into the antineoplastic mechanism of Chelidonium majus via systems pharmacology approach. Quant. Biol. 7(1): 42-53 (2019) - [c13]Chuyi Song, Guixia Liu, Jiazhi Song, Jingqing Jiang:
A Novel Prediction Method of ATP Binding Residues from Protein Primary Sequence. ISNN (2) 2019: 548-555 - 2018
- [j21]Ping Zhang, Wanfu Gao, Guixia Liu:
Feature selection considering weighted relevancy. Appl. Intell. 48(12): 4615-4625 (2018) - [j20]Lingtao Su, Guixia Liu, Tian Bai, Xiangyu Meng, Qingshan Ma:
MGOGP: a gene module-based heuristic algorithm for cancer-related gene prioritization. BMC Bioinform. 19(1): 215:1-215:12 (2018) - [j19]Rongquan Wang, Guixia Liu, Caixia Wang, Lingtao Su, Liyan Sun:
Predicting overlapping protein complexes based on core-attachment and a local modularity structure. BMC Bioinform. 19(1): 305:1-305:15 (2018) - [j18]Yingchun Cai, Hongbin Yang, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang:
Multiclassification Prediction of Enzymatic Reactions for Oxidoreductases and Hydrolases Using Reaction Fingerprints and Machine Learning Methods. J. Chem. Inf. Model. 58(6): 1169-1181 (2018) - [j17]Hongbin Yang, Lixia Sun, Zhuang Wang, Weihua Li, Guixia Liu, Yun Tang:
ADMETopt: A Web Server for ADMET Optimization in Drug Design via Scaffold Hopping. J. Chem. Inf. Model. 58(10): 2051-2056 (2018) - 2017
- [j16]Zengrui Wu, Feixiong Cheng, Jie Li, Weihua Li, Guixia Liu, Yun Tang:
SDTNBI: an integrated network and chemoinformatics tool for systematic prediction of drug-target interactions and drug repositioning. Briefings Bioinform. 18(2): 333-347 (2017) - [j15]Hanwen Du, Junhao Li, Yingchun Cai, Hongxiao Zhang, Guixia Liu, Yun Tang, Weihua Li:
Computational Investigation of Ligand Binding to the Peripheral Site in CYP3A4: Conformational Dynamics and Inhibitor Discovery. J. Chem. Inf. Model. 57(3): 616-626 (2017) - [j14]Dac-Trung Nguyen, Stephen L. Mathias, Cristian Bologa, Søren Brunak, Nicolas F. Fernandez, Anna Gaulton, Anne Hersey, Jayme Holmes, Lars Juhl Jensen, Anneli Karlsson, Guixia Liu, Avi Ma'ayan, Geetha Mandava, Subramani Mani, Saurabh Mehta, John P. Overington, Juhee Patel, Andrew D. Rouillard, Stephan C. Schürer, Timothy Sheils, Anton Simeonov, Larry A. Sklar, Noel Southall, Oleg Ursu, Dusica Vidovic, Anna Waller, Jeremy J. Yang, Ajit Jadhav, Tudor I. Oprea, Rajarshi Guha:
Pharos: Collating protein information to shed light on the druggable genome. Nucleic Acids Res. 45(Database-Issue): D995-D1002 (2017) - [c12]Lingtao Su, Dong Xu, Guixia Liu:
A new method for disease-related gene prioritization. BIBM 2017: 2315 - 2016
- [j13]Zhihui Zhou, Guixia Liu, Lingtao Su:
A new approach to detect epistasis utilizing parallel implementation of ant colony optimization by MapReduce framework. Int. J. Comput. Math. 93(3): 511-523 (2016) - 2014
- [j12]Xiao Li, Lei Chen, Feixiong Cheng, Zengrui Wu, Hanping Bian, Congying Xu, Weihua Li, Guixia Liu, Xu Shen, Yun Tang:
In Silico Prediction of Chemical Acute Oral Toxicity Using Multi-Classification Methods. J. Chem. Inf. Model. 54(4): 1061-1069 (2014) - [c11]Zhihui Zhou, Guixia Liu, Lingtao Su, Liang Han, Lun Yan:
A New Epistasis Detecting Algorithm Based on Ant Colony Optimization. ICIMCS 2014: 226 - 2013
- [j11]Feixiong Cheng, Weihua Li, Zengrui Wu, Xichuan Wang, Chen Zhang, Jie Li, Guixia Liu, Yun Tang:
Prediction of Polypharmacological Profiles of Drugs by the Integration of Chemical, Side Effect, and Therapeutic Space. J. Chem. Inf. Model. 53(4): 753-762 (2013) - [c10]Zhihui Zhou, Guixia Liu, Lingtao Su, Lun Yan, Liang Han:
CChi: An efficient cloud epistasis test model in human genome wide association studies. BMEI 2013: 787-791 - 2012
- [j10]Feixiong Cheng, Yutaka Ikenaga, Yadi Zhou, Yue Yu, Weihua Li, Jie Shen, Zheng Du, Lei Chen, Congying Xu, Guixia Liu, Philip W. Lee, Yun Tang:
In Silico Assessment of Chemical Biodegradability. J. Chem. Inf. Model. 52(3): 655-669 (2012) - [j9]Guoping Hu, Guanglin Kuang, Wen Xiao, Weihua Li, Guixia Liu, Yun Tang:
Performance Evaluation of 2D Fingerprint and 3D Shape Similarity Methods in Virtual Screening. J. Chem. Inf. Model. 52(5): 1103-1113 (2012) - [j8]Congying Xu, Feixiong Cheng, Lei Chen, Zheng Du, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang:
In silico Prediction of Chemical Ames Mutagenicity. J. Chem. Inf. Model. 52(11): 2840-2847 (2012) - [j7]Weihua Li, Jing Fu, Feixiong Cheng, Mingyue Zheng, Jian Zhang, Guixia Liu, Yun Tang:
Unbinding Pathways of GW4064 from Human Farnesoid X Receptor As Revealed by Molecular Dynamics Simulations. J. Chem. Inf. Model. 52(11): 3043-3052 (2012) - [j6]Feixiong Cheng, Weihua Li, Yadi Zhou, Jie Shen, Zengrui Wu, Guixia Liu, Philip W. Lee, Yun Tang:
admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties. J. Chem. Inf. Model. 52(11): 3099-3105 (2012) - [j5]Feixiong Cheng, Chuang Liu, Jing Jiang, Weiqiang Lu, Weihua Li, Guixia Liu, Wei-Xing Zhou, Jin Huang, Yun Tang:
Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference. PLoS Comput. Biol. 8(5) (2012) - 2011
- [j4]Feixiong Cheng, Yue Yu, Jie Shen, Lei Yang, Weihua Li, Guixia Liu, Philip W. Lee, Yun Tang:
Classification of Cytochrome P450 Inhibitors and Noninhibitors Using Combined Classifiers. J. Chem. Inf. Model. 51(5): 996-1011 (2011) - [j3]Feixiong Cheng, Yue Yu, Yadi Zhou, Zhonghua Shen, Wen Xiao, Guixia Liu, Weihua Li, Philip W. Lee, Yun Tang:
Insights into Molecular Basis of Cytochrome P450 Inhibitory Promiscuity of Compounds. J. Chem. Inf. Model. 51(10): 2482-2495 (2011) - 2010
- [j2]Ming Zheng, Guixia Liu, Chunguang Zhou, Yanchun Liang, Yan Wang:
Gravitation field algorithm and its application in gene cluster. Algorithms Mol. Biol. 5: 32 (2010) - [j1]Yaozong Li, Jie Shen, Xianqiang Sun, Weihua Li, Guixia Liu, Yun Tang:
Accuracy Assessment of Protein-Based Docking Programs against RNA Targets. J. Chem. Inf. Model. 50(6): 1134-1146 (2010) - [c9]Ming Zheng, Guixia Liu, Deping Wang, Yan Wang, Chunguang Zhou, Yuan Tian:
Gene Regulatory Network Reconstruction with Multiple Dataset Fusion and Differential Equation. FCST 2010: 454-458
2000 – 2009
- 2009
- [c8]Shanhong Zheng, Chunguang Zhou, Guixia Liu:
Signaling Pathway Reconstruction by Fusing Priori Knowledge. ICIC (1) 2009: 55-64 - [c7]Lan Huang, Guixia Liu, Rongxing Wang, Bin Yang, Chunguang Zhou:
Improved Clonal Selection Algorithm for Protein Contact Map Prediction. NCM 2009: 1170-1175 - 2008
- [c6]Shanhong Zheng, Chunguang Zhou, Yanwen Li, Guixia Liu:
Research on Signaling Pathway Reconstruction Based on HMM. ICYCS 2008: 994-999 - 2006
- [c5]Wengang Zhou, Chunguang Zhou, Hong Zhu, Guixia Liu, Xiaoyu Chang:
Feature Selection for Microarray Data Analysis Using Mutual Information and Rough Set Theory. ICIC (3) 2006: 424-432 - [c4]Wengang Zhou, Chunguang Zhou, Guixia Liu, Hong Zhu:
Feature Selection for Microarray Data Analysis Using Mutual Information and Rough Set Theory. AIAI 2006: 492-499 - [c3]Guixia Liu, Yuanxian Zhu, Wengang Zhou, Chunguang Zhou, Rongxing Wang:
Prediction of Contact Maps Using Modified Transiently Chaotic Neural Network. ISNN (2) 2006: 696-701 - 2005
- [c2]Guixia Liu, Chunguang Zhou, Yuanxian Zhu, Wengang Zhou:
Prediction of Contact Maps in Proteins Based on Recurrent Neural Network with Bias Units. ISNN (3) 2005: 686-690 - [c1]Wengang Zhou, Chunguang Zhou, Guixia Liu, Yanxin Huang:
Identification of Transcription Factor Binding Sites Using Hybrid Particle Swarm Optimization. RSFDGrC (2) 2005: 438-445
Coauthor Index
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