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ORCIDXin Gao 0001
Person information
- affiliation: King Abdullah University of Science and Technology, Computer, Electrical and Mathematical Sciences and Engineering Division, Thuwal, Saudi Arabia
- affiliation (2009 - 2010): Carnegie Mellon University, School of Computer Science, Pittsburgh, PA, USA
- affiliation (PhD 2009): University of Waterloo, ON, Canada
Other persons with the same name
- Xin Gao — disambiguation page
- Xin Gao 0002 — University of Pennsylvania, Center for Bioinformatics / Department of Biology, Philadelphia, PA, USA (and 1 more)
- Xin Gao 0003
![[0000-0001-9906-0596]](https://dblp1.uni-trier.de/img/orcid-mark.12x12.png "0000-0001-9906-0596")
— Chinese Academy of Sciences, Suzhou Institute of Biomedical Engineering and Technology, Department of Medical Imaging, China (and 2 more) - Xin Gao 0004 — New Jersey Institute of Technology, Department of Computer Science, Newark, NJ, USA
- Xin Gao 0005 — University of Arizona, Department of Electrical and Computer Engineering, Tucson, AZ, USA
- Xin Gao 0006 — University of Western Ontario, Department of Electrical and Computer Engineering, London, ON, Canada
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2020 – today
- 2023
[j137]Hongli Gao, Bin Zhang, Long Liu, Shan Li, Xin Gao, Bin Yu:
A universal framework for single-cell multi-omics data integration with graph convolutional networks. Briefings Bioinform. 24(3) (2023)- [j136]Yang Li, Zihou Guo, Keqi Wang, Xin Gao, Guohua Wang:
End-to-end interpretable disease-gene association prediction. Briefings Bioinform. 24(3) (2023) - [j135]Xin Wang, Xin Gao, Guohua Wang, Dan Li:
miProBERT: identification of microRNA promoters based on the pre-trained model BERT. Briefings Bioinform. 24(3) (2023) - [j134]Pengju Ding, Yifei Wang, Xinyu Zhang, Xin Gao, Guozhu Liu, Bin Yu:
DeepSTF: predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape. Briefings Bioinform. 24(4) (2023) - [j133]Jiahao Gong, Sanyuan Zhao, Kin-Man Lam, Xin Gao, Jianbing Shen:
Spectrum-irrelevant fine-grained representation for visible-infrared person re-identification. Comput. Vis. Image Underst. 232: 103703 (2023) - [j132]Hao Wang, Chengcheng Yang, Xiangliang Zhang, Xin Gao:
Efficient locality-sensitive hashing over high-dimensional streaming data. Neural Comput. Appl. 35(5): 3753-3766 (2023) - [j131]Junbo Yin, Jianbing Shen, Xin Gao, David J. Crandall, Ruigang Yang:
Graph Neural Network and Spatiotemporal Transformer Attention for 3D Video Object Detection From Point Clouds. IEEE Trans. Pattern Anal. Mach. Intell. 45(8): 9822-9835 (2023) - [j130]Wanyun Zhou, Yufei Liu, Yingxin Li, Siqi Kong, Weilin Wang, Boyun Ding, Jiyun Han, Chaozhou Mou, Xin Gao, Juntao Liu:
TriNet: A tri-fusion neural network for the prediction of anticancer and antimicrobial peptides. Patterns 4(3): 100702 (2023) - [j129]Yifei Wang, Xue Wang, Cheng Chen, Hongli Gao, Adil Salhi, Xin Gao, Bin Yu:
RPI-CapsuleGAN: Predicting RNA-protein interactions through an interpretable generative adversarial capsule network. Pattern Recognit. 141: 109626 (2023) - [j128]Xiaolin Wang, Hongli Gao, Ren Qi, Ruiqing Zheng, Xin Gao, Bin Yu:
scBKAP: A Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-Means. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2007-2015 (2023) - [j127]Xiuying Chen, Mingzhe Li, Shen Gao, Zhangming Chan, Dongyan Zhao, Xin Gao, Xiangliang Zhang, Rui Yan:
Follow the Timeline! Generating an Abstractive and Extractive Timeline Summary in Chronological Order. ACM Trans. Inf. Syst. 41(1): 9:1-9:30 (2023) - [c53]Hongyan Bao, Yufei Han, Yujun Zhou, Xin Gao, Xiangliang Zhang:
Towards Efficient and Domain-Agnostic Evasion Attack with High-Dimensional Categorical Inputs. AAAI 2023: 6753-6761 - [c52]Xiuying Chen, Mingzhe Li, Jiayi Zhang, Xiaoqiang Xia, Chen Wei, Jianwei Cui, Xin Gao, Xiangliang Zhang, Rui Yan:
Learning towards Selective Data Augmentation for Dialogue Generation. AAAI 2023: 12673-12681 - [c51]Xiuying Chen, Guodong Long, Chongyang Tao, Mingzhe Li, Xin Gao, Chengqi Zhang, Xiangliang Zhang:
Improving the Robustness of Summarization Systems with Dual Augmentation. ACL (1) 2023: 6846-6857 - [c50]Zheng Yang, Bing Han, Weiming Chen, Xin Gao:
Learn to Encode Heterogeneous Data: A Heterogeneous Aware Network for Multi-Future Trajectory Prediction. IJCNN 2023: 1-8 - [c49]Qiang Yang, Changsheng Ma, Qiannan Zhang, Xin Gao, Chuxu Zhang, Xiangliang Zhang:
Counterfactual Learning on Heterogeneous Graphs with Greedy Perturbation. KDD 2023: 2988-2998 - [c48]Xiuying Chen, Mingzhe Li, Shen Gao, Xin Cheng, Qiang Yang, Qishen Zhang, Xin Gao, Xiangliang Zhang:
A Topic-aware Summarization Framework with Different Modal Side Information. SIGIR 2023: 1416-1425 - [c47]Qiang Yang, Changsheng Ma, Qiannan Zhang, Xin Gao, Chuxu Zhang, Xiangliang Zhang:
Interpretable Research Interest Shift Detection with Temporal Heterogeneous Graphs. WSDM 2023: 321-329 - [i37]Xiuying Chen, Mingzhe Li, Shen Gao, Zhangming Chan, Dongyan Zhao, Xin Gao, Xiangliang Zhang, Rui Yan:
Follow the Timeline! Generating Abstractive and Extractive Timeline Summary in Chronological Order. CoRR abs/2301.00867 (2023) - [i36]Zhihang Hu, Qinze Yu, Yucheng Guo, Taifeng Wang, Irwin King, Xin Gao, Le Song, Yu Li:
Drug Synergistic Combinations Predictions via Large-Scale Pre-Training and Graph Structure Learning. CoRR abs/2301.05931 (2023) - [i35]Juexiao Zhou, Haoyang Li, Xingyu Liao, Bin Zhang, Wenjia He, Zhongxiao Li, Longxi Zhou, Xin Gao:
Audit to Forget: A Unified Method to Revoke Patients' Private Data in Intelligent Healthcare. CoRR abs/2302.09813 (2023) - [i34]Juexiao Zhou, Longxi Zhou, Di Wang, Xiaopeng Xu, Haoyang Li, Yuetan Chu, Wenkai Han, Xin Gao:
Personalized and privacy-preserving federated heterogeneous medical image analysis with PPPML-HMI. CoRR abs/2302.11571 (2023) - [i33]Xiuying Chen, Mingzhe Li, Jiayi Zhang, Xiaoqiang Xia, Chen Wei, Jianwei Cui, Xin Gao, Xiangliang Zhang, Rui Yan:
Learning towards Selective Data Augmentation for Dialogue Generation. CoRR abs/2303.09719 (2023) - [i32]Juexiao Zhou, Xin Gao:
SkinGPT: A Dermatology Diagnostic System with Vision Large Language Model. CoRR abs/2304.10691 (2023) - [i31]Xiuying Chen, Mingzhe Li, Shen Gao, Xin Cheng, Qiang Yang, Qishen Zhang, Xin Gao, Xiangliang Zhang:
A Topic-aware Summarization Framework with Different Modal Side Information. CoRR abs/2305.11503 (2023) - [i30]Xiuying Chen, Guodong Long, Chongyang Tao, Mingzhe Li, Xin Gao, Chengqi Zhang, Xiangliang Zhang:
Improving the Robustness of Summarization Systems with Dual Augmentation. CoRR abs/2306.01090 (2023) - [i29]Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu:
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health. CoRR abs/2306.10070 (2023) - [i28]Juexiao Zhou, Xiuying Chen, Xin Gao:
Path to Medical AGI: Unify Domain-specific Medical LLMs with the Lowest Cost. CoRR abs/2306.10765 (2023) - [i27]Juexiao Zhou, Bin Zhang, Xiuying Chen, Haoyang Li, Xiaopeng Xu, Siyuan Chen, Xin Gao:
Automated Bioinformatics Analysis via AutoBA. CoRR abs/2309.03242 (2023) - [i26]Bintao He, Fa Zhang, Chenjie Feng, Jianyi Yang, Xin Gao, Renmin Han:
CryoAlign: feature-based method for global and local 3D alignment of EM density maps. CoRR abs/2309.09217 (2023) - 2022
- [j126]Satish Chandra, Mahendra Kumar Gourisaria, Harshvardhan GM, Debanjan Konar, Xin Gao, Tianyang Wang, Min Xu:
Prolificacy Assessment of Spermatozoan via State-of-the-Art Deep Learning Frameworks. IEEE Access 10: 13715-13727 (2022) - [j125]Bin Yu, Xue Wang, Yaqun Zhang, Hongli Gao, Yifei Wang, Yushuang Liu, Xin Gao:
RPI-MDLStack: Predicting RNA-protein interactions through deep learning with stacking strategy and LASSO. Appl. Soft Comput. 120: 108676 (2022) - [j124]Wenjia He, Yi Jiang, Junru Jin, Zhongshen Li, Jiaojiao Zhao, Balachandran Manavalan, Ran Su, Xin Gao, Leyi Wei:
Accelerating bioactive peptide discovery via mutual information-based meta-learning. Briefings Bioinform. 23(1) (2022) - [j123]Neng Huang, Fan Nie, Peng Ni, Xin Gao, Feng Luo, Jianxin Wang:
BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer. Briefings Bioinform. 23(1) (2022) - [j122]Francesco Napolitano, Xiaopeng Xu, Xin Gao:
Impact of computational approaches in the fight against COVID-19: an AI guided review of 17 000 studies. Briefings Bioinform. 23(1) (2022) - [j121]Junkang Wei, Siyuan Chen, Licheng Zong, Xin Gao, Yu Li:
Protein-RNA interaction prediction with deep learning: structure matters. Briefings Bioinform. 23(1) (2022) - [j120]Xinxin Peng, Xiaoyu Wang, Yuming Guo, Zongyuan Ge, Fuyi Li, Xin Gao, Jiangning Song:
RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins. Briefings Bioinform. 23(4) (2022) - [j119]Renchu Guan, Haoyu Pang, Yanchun Liang, Zhongjun Shao, Xin Gao, Dong Xu, Xiaoyue Feng:
Discovering trends and hotspots of biosafety and biosecurity research via machine learning. Briefings Bioinform. 23(5) (2022) - [j118]Wenkai Han, Yuqi Cheng, Jiayang Chen, Huawen Zhong, Zhihang Hu, Siyuan Chen, Licheng Zong, Liang Hong, Ting-Fung Chan, Irwin King, Xin Gao, Yu Li:
Self-supervised contrastive learning for integrative single cell RNA-seq data analysis. Briefings Bioinform. 23(5) (2022) - [j117]Kai Zheng, Haochen Zhao, Qichang Zhao, Bin Wang, Xin Gao, Jianxin Wang:
NASMDR: a framework for miRNA-drug resistance prediction using efficient neural architecture search and graph isomorphism networks. Briefings Bioinform. 23(5) (2022) - [j116]Yu Li, Siyuan Chen, Trisevgeni Rapakoulia, Hiroyuki Kuwahara, Kevin Y. Yip, Xin Gao:
Deep learning identifies and quantifies recombination hotspot determinants. Bioinform. 38(10): 2683-2691 (2022) - [j115]Yang Li, Guanyu Qiao, Xin Gao, Guohua Wang:
Supervised graph co-contrastive learning for drug-target interaction prediction. Bioinform. 38(10): 2847-2854 (2022) - [j114]Haoyang Li, Hanmin Li, Juexiao Zhou, Xin Gao:
SD2: spatially resolved transcriptomics deconvolution through integration of dropout and spatial information. Bioinform. 38(21): 4878-4884 (2022) - [j113]Bin Yu, Yaqun Zhang, Xue Wang, Hongli Gao, Jianqiang Sun, Xin Gao:
Identification of DNA modification sites based on elastic net and bidirectional gated recurrent unit with convolutional neural network. Biomed. Signal Process. Control. 75: 103566 (2022) - [j112]Zhongxiao Li, Yisheng Li, Bin Zhang, Yu Li, Yongkang Long, Juexiao Zhou, Xudong Zou, Min Zhang, Yuhui Hu, Wei Chen, Xin Gao:
DeeReCT-APA: Prediction of Alternative Polyadenylation Site Usage Through Deep Learning. Genom. Proteom. Bioinform. 20(3): 483-495 (2022) - [j111]Juexiao Zhou, Bin Zhang, Haoyang Li, Longxi Zhou, Zhongxiao Li, Yongkang Long, Wenkai Han, Meng-Ran Wang, Huanhuan Cui, Jingjing Li, Wei Chen, Xin Gao:
Annotating TSSs in Multiple Cell Types Based on DNA Sequence and RNA-seq Data via DeeReCT-TSS. Genom. Proteom. Bioinform. 20(5): 959-973 (2022) - [j110]Xu Yan, Yingfeng Lu, Zhen Li, Qing Wei, Xin Gao, Sheng Wang, Song Wu, Shuguang Cui:
PointSite: A Point Cloud Segmentation Tool for Identification of Protein Ligand Binding Atoms. J. Chem. Inf. Model. 62(11): 2835-2845 (2022) - [j109]Xingyu Liao, Kang Hu, Adil Salhi, You Zou, Jianxin Wang, Xin Gao:
msRepDB: a comprehensive repetitive sequence database of over 80 000 species. Nucleic Acids Res. 50(D1): 236-245 (2022) - [j108]Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Chris Bain, Robin B. Gasser, Junzhou Li, Zuoren Yang, Xin Gao, Lukasz A. Kurgan, Jiangning Song:
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets. Nucleic Acids Res. 50(W1): 434-447 (2022) - [j107]Longxi Zhou, Xianglin Meng, Yuxin Huang, Kai Kang, Juexiao Zhou, Yuetan Chu, Haoyang Li, Dexuan Xie, Jiannan Zhang, Weizhen Yang, Na Bai, Yi Zhao, Mingyan Zhao, Guohua Wang, Lawrence Carin, Xigang Xiao, Kaijiang Yu, Zhaowen Qiu, Xin Gao:
An interpretable deep learning workflow for discovering subvisual abnormalities in CT scans of COVID-19 inpatients and survivors. Nat. Mach. Intell. 4(5): 494-503 (2022) - [j106]Francesco Napolitano, Xin Gao:
Special issue on computational biology and bioinformatic applications to the COVID-19 pandemic. Quant. Biol. 10(2): 123 (2022) - [j105]Dongming Wu, Mang Ye, Gaojie Lin, Xin Gao, Jianbing Shen:
Person Re-Identification by Context-Aware Part Attention and Multi-Head Collaborative Learning. IEEE Trans. Inf. Forensics Secur. 17: 115-126 (2022) - [j104]Ming Fan, Chengcheng Yuan, Guangyao Huang, Maosheng Xu, Shiwei Wang, Xin Gao, Lihua Li:
A Framework for Deep Multitask Learning With Multiparametric Magnetic Resonance Imaging for the Joint Prediction of Histological Characteristics in Breast Cancer. IEEE J. Biomed. Health Informatics 26(8): 3884-3895 (2022) - [j103]Dalin Zhang, Lina Yao, Kaixuan Chen, Zheng Yang, Xin Gao, Yunhao Liu:
Preventing Sensitive Information Leakage From Mobile Sensor Signals via Integrative Transformation. IEEE Trans. Mob. Comput. 21(12): 4517-4528 (2022) - [c46]Helene Orsini, Hongyan Bao, Yujun Zhou, Xiangrui Xu, Yufei Han, Longyang Yi, Wei Wang, Xin Gao, Xiangliang Zhang:
AdvCat: Domain-Agnostic Robustness Assessment for Cybersecurity-Critical Applications with Categorical Inputs. IEEE Big Data 2022: 1060-1069 - [c45]Changsheng Ma, Qiang Yang, Xin Gao, Xiangliang Zhang:
DEMO: Disentangled Molecular Graph Generation via an Invertible Flow Model. CIKM 2022: 1420-1429 - [c44]Xiuying Chen, Mingzhe Li, Shen Gao, Rui Yan, Xin Gao, Xiangliang Zhang:
Scientific Paper Extractive Summarization Enhanced by Citation Graphs. EMNLP 2022: 4053-4062 - [c43]Haoyi Zhu, Chuting Wang, Yuanxin Wang, Zhaoxin Fan, Mostofa Rafid Uddin, Xin Gao, Jing Zhang, Xiangrui Zeng, Min Xu:
Unsupervised Multi-Task Learning for 3D Subtomogram Image Alignment, Clustering and Segmentation. ICIP 2022: 2751-2755 - [c42]Xin Gao, Rui Yang, Eng Gee Lim:
Rolling Bearing Fault Diagnosis Based on Deep Adversarial Networks with Convolutional Layer and Wasserstein Distance. ICAC 2022: 1-6 - [c41]Xiuying Chen, Mingzhe Li, Xin Gao, Xiangliang Zhang:
Towards Improving Faithfulness in Abstractive Summarization. NeurIPS 2022 - [c40]Xiuying Chen, Hind Alamro, Mingzhe Li, Shen Gao, Rui Yan, Xin Gao, Xiangliang Zhang:
Target-aware Abstractive Related Work Generation with Contrastive Learning. SIGIR 2022: 373-383 - [i25]Xiuying Chen, Hind Alamro, Mingzhe Li, Shen Gao, Rui Yan, Xin Gao, Xiangliang Zhang:
Target-aware Abstractive Related Work Generation with Contrastive Learning. CoRR abs/2205.13339 (2022) - [i24]Junbo Yin, Jianbing Shen, Xin Gao, David Crandall, Ruigang Yang:
Graph Neural Network and Spatiotemporal Transformer Attention for 3D Video Object Detection from Point Clouds. CoRR abs/2207.12659 (2022) - [i23]Xiuying Chen, Mingzhe Li, Xin Gao, Xiangliang Zhang:
Towards Improving Faithfulness in Abstractive Summarization. CoRR abs/2210.01877 (2022) - [i22]Xiuying Chen, Mingzhe Li, Shen Gao, Rui Yan, Xin Gao, Xiangliang Zhang:
Scientific Paper Extractive Summarization Enhanced by Citation Graphs. CoRR abs/2212.04214 (2022) - [i21]Hongyan Bao, Yufei Han, Yujun Zhou, Xin Gao, Xiangliang Zhang:
Towards Efficient and Domain-Agnostic Evasion Attack with High-dimensional Categorical Inputs. CoRR abs/2212.06836 (2022) - [i20]Helene Orsini, Hongyan Bao, Yujun Zhou, Xiangrui Xu, Yufei Han, Longyang Yi, Wei Wang, Xin Gao, Xiangliang Zhang:
AdvCat: Domain-Agnostic Robustness Assessment for Cybersecurity-Critical Applications with Categorical Inputs. CoRR abs/2212.13989 (2022) - 2021
- [j102]Maxat Kulmanov, Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf:
Semantic similarity and machine learning with ontologies. Briefings Bioinform. 22(4) (2021) - [j101]Renmin Han, Guojun Li, Xin Gao:
Robust and ultrafast fiducial marker correspondence in electron tomography by a two-stage algorithm considering local constraints. Bioinform. 37(1): 107-117 (2021) - [j100]Renmin Han, Lun Li, Peng Yang, Fa Zhang, Xin Gao:
A novel constrained reconstruction model towards high-resolution subtomogram averaging. Bioinform. 37(11): 1616-1626 (2021) - [j99]Neng Huang, Fan Nie, Peng Ni, Feng Luo, Xin Gao, Jianxin Wang:
NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks. Bioinform. 37(19): 3120-3127 (2021) - [j98]Hammad Naveed, Corinna Reglin, Thomas Schubert, Xin Gao, Stefan T. Arold, Michael L. Maitland:
Identifying Novel Drug Targets by iDTPnd: A Case Study of Kinase Inhibitors. Genom. Proteom. Bioinform. 19(6): 986-997 (2021) - [j97]Fatima Zohra Smaili, Shuye Tian, Ambrish Roy, Meshari Alazmi, Stefan T. Arold, Srayanta Mukherjee, P. Scott Hefty, Wei Chen, Xin Gao:
QAUST: Protein Function Prediction Using Structure Similarity, Protein Interaction, and Functional Motifs. Genom. Proteom. Bioinform. 19(6): 998-1011 (2021) - [j96]Hiroyuki Kuwahara, Xin Gao:
Analysis of the effects of related fingerprints on molecular similarity using an eigenvalue entropy approach. J. Cheminformatics 13(1): 27 (2021) - [j95]Maha A. Thafar, Rawan S. Olayan, Somayah Albaradei, Vladimir B. Bajic, Takashi Gojobori, Magbubah Essack, Xin Gao:
DTi2Vec: Drug-target interaction prediction using network embedding and ensemble learning. J. Cheminformatics 13(1): 71 (2021) - [j94]Chengyan Li, Xin Gao, Qingquan Sun:
Introduction of Progress in Education under Recent Technology Revolution. Mob. Networks Appl. 26(5): 1881-1883 (2021) - [j93]Ramzan Umarov, Yu Li, Takahiro Arakawa, Satoshi Takizawa, Xin Gao, Erik Arner:
ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation. PLoS Comput. Biol. 17(9) (2021) - [i19]Junkang Wei, Siyuan Chen, Licheng Zong, Xin Gao, Yu Li:
Protein-RNA interaction prediction with deep learning: Structure matters. CoRR abs/2107.12243 (2021) - [i18]Nanyi Fei, Zhiwu Lu, Yizhao Gao, Guoxing Yang, Yuqi Huo, Jingyuan Wen, Haoyu Lu, Ruihua Song, Xin Gao, Tao Xiang, Hao Sun, Ji-Rong Wen:
WenLan 2.0: Make AI Imagine via a Multimodal Foundation Model. CoRR abs/2110.14378 (2021) - 2020
- [j92]Somayah Albaradei, Francesco Napolitano, Mahmut Uludag, Maha A. Thafar, Sara Napolitano, Magbubah Essack, Vladimir B. Bajic, Xin Gao:
Automated Counting of Colony Forming Units Using Deep Transfer Learning From a Model for Congested Scenes Analysis. IEEE Access 8: 164340-164346 (2020) - [j91]Feiyang Chen, Ying Jiang, Xiangrui Zeng, Jing Zhang, Xin Gao, Min Xu:
PUB-SalNet: A Pre-Trained Unsupervised Self-Aware Backpropagation Network for Biomedical Salient Segmentation. Algorithms 13(5): 126 (2020) - [j90]Tanvir Alam, Meshari Alazmi, Rayan Naser, Franceline Huser, Afaque A. Momin, Veronica Astro, SeungBeom Hong, Katarzyna W. Walkiewicz, Christian G. Canlas, Raphaël Huser, Amal J. Ali, Jasmeen Merzaban, Antonio Adamo, Mariusz Jaremko, Lukasz Jaremko, Vladimir B. Bajic, Xin Gao, Stefan T. Arold:
Proteome-level assessment of origin, prevalence and function of leucine-aspartic acid (LD) motifs. Bioinform. 36(4): 1121-1128 (2020) - [j89]Renmin Han, Sheng Wang, Xin Gao:
Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing. Bioinform. 36(5): 1333-1343 (2020) - [j88]Francesco Napolitano, Diego Carrella, Xin Gao, Diego di Bernardo:
gep2pep: a bioconductor package for the creation and analysis of pathway-based expression profiles. Bioinform. 36(6): 1944-1945 (2020) - [j87]Fatima Zohra Smaili, Xin Gao, Robert Hoehndorf:
Formal axioms in biomedical ontologies improve analysis and interpretation of associated data. Bioinform. 36(7): 2229-2236 (2020) - [j86]Yu Li, Sheng Wang, Chongwei Bi, Zhaowen Qiu, Mo Li, Xin Gao:
DeepSimulator1.5: a more powerful, quicker and lighter simulator for Nanopore sequencing. Bioinform. 36(8): 2578-2580 (2020) - [j85]Ting Yu, Juntao Liu, Xin Gao, Guojun Li:
iPAC: a genome-guided assembler of isoforms via phasing and combing paths. Bioinform. 36(9): 2712-2717 (2020) - [j84]Chunxiang Wang, Xin Gao, Juntao Liu:
Impact of data preprocessing on cell-type clustering based on single-cell RNA-seq data. BMC Bioinform. 21(1): 440 (2020) - [j83]Xingyu Liao, Xin Gao, Xiankai Zhang, Fang-Xiang Wu, Jianxin Wang:
RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads. BMC Bioinform. 21(1): 463 (2020) - [j82]Yongchun Lü, Xiangrui Zeng, Xinhui Tian, Xiao Shi, Hui Wang, Xiaohui Zheng, Xiaodong Liu, Xiaofang Zhao, Xin Gao, Min Xu:
Spark-based parallel calculation of 3D fourier shell correlation for macromolecule structure local resolution estimation. BMC Bioinform. 21-S(13): 391 (2020) - [j81]Ke Niu, Jiayang Guo, Yijie Pan, Xin Gao, Xueping Peng, Ning Li, Hailong Li:
Multichannel Deep Attention Neural Networks for the Classification of Autism Spectrum Disorder Using Neuroimaging and Personal Characteristic Data. Complex. 2020: 1357853:1-1357853:9 (2020) - [j80]Maha A. Thafar, Rawan S. Olayan, Haitham Ashoor, Somayah Albaradei, Vladimir B. Bajic, Xin Gao, Takashi Gojobori, Magbubah Essack:
DTiGEMS+: drug-target interaction prediction using graph embedding, graph mining, and similarity-based techniques. J. Cheminformatics 12(1): 44 (2020) - [j79]Zhiqiang Xu, Yiping Ke, Xin Cao, Chunlai Zhou, Pengfei Wei, Xin Gao:
A unified linear convergence analysis of k-SVD. Memetic Comput. 12(4): 343-353 (2020) - [j78]Ran Li, Liangyong Yu, Bo Zhou, Xiangrui Zeng, Zhenyu Wang, Xiaoyan Yang, Jing Zhang, Xin Gao, Rui Jiang, Min Xu:
Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms. PLoS Comput. Biol. 16(11) (2020) - [j77]Yumin Zheng, Haohan Wang, Yang Zhang, Xin Gao, Eric P. Xing, Min Xu:
Poly(A)-DG: A deep-learning-based domain generalization method to identify cross-species Poly(A) signal without prior knowledge from target species. PLoS Comput. Biol. 16(11): 1008297 (2020) - [j76]Yufeng Yang, Yixiao Ma, Jing Zhang, Xin Gao, Min Xu:
AttPNet: Attention-Based Deep Neural Network for 3D Point Set Analysis. Sensors 20(19): 5455 (2020) - [j75]Da Yan, Xin Gao, Samah J. Fodeh, Jake Y. Chen:
Guest Editorial for Selected Papers from BIOKDD 2018 and DMBIH 2018. IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 1832-1834 (2020) - [j74]Ming Fan, Wei Yuan, Wenrui Zhao, Maosheng Xu, Shiwei Wang, Xin Gao, Lihua Li:
Joint Prediction of Breast Cancer Histological Grade and Ki-67 Expression Level Based on DCE-MRI and DWI Radiomics. IEEE J. Biomed. Health Informatics 24(6): 1632-1642 (2020) - [j73]Longxi Zhou, Zhongxiao Li, Juexiao Zhou, Haoyang Li, Yupeng Chen, Yuxin Huang, Dexuan Xie, Lintao Zhao, Ming Fan, Shahrukh Hashmi, Faisal Abdelkareem, Riham Eiada, Xigang Xiao, Lihua Li, Zhaowen Qiu, Xin Gao:
A Rapid, Accurate and Machine-Agnostic Segmentation and Quantification Method for CT-Based COVID-19 Diagnosis. IEEE Trans. Medical Imaging 39(8): 2638-2652 (2020) - [j72]Lizhong Ding, Shizhong Liao, Yong Liu, Li Liu, Fan Zhu, Yazhou Yao, Ling Shao, Xin Gao:
Approximate Kernel Selection via Matrix Approximation. IEEE Trans. Neural Networks Learn. Syst. 31(11): 4881-4891 (2020) - [c39]Xinshi Chen, Yu Li, Ramzan Umarov, Xin Gao, Le Song:
RNA Secondary Structure Prediction By Learning Unrolled Algorithms. ICLR 2020 - [c38]Xinshi Chen, Hanjun Dai, Yu Li, Xin Gao, Le Song:
Learning To Stop While Learning To Predict. ICML 2020: 1520-1530