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Juan Eugenio Iglesias

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affiliation: University College London, Department of Medical Physics and Biomedical Engineering, UK
affiliation: Massachusetts General Hospital and Harvard Medical School, USA

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2023
[j39]
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Benjamin Billot, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias:
SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining. Medical Image Anal. 86: 102789 (2023)
[j38]
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Henry F. J. Tregidgo, Sonja Soskic, Juri Althonayan, Chiara Maffei, Koen Van Leemput, Polina Golland, Ricardo Insausti, Garikoitz Lerma-Usabiaga, César Caballero-Gaudes, Pedro M. Paz-Alonso, Anastasia Yendiki, Daniel C. Alexander, Martina Bocchetta, Jonathan D. Rohrer, Juan Eugenio Iglesias:
Accurate Bayesian segmentation of thalamic nuclei using diffusion MRI and an improved histological atlas. NeuroImage 274: 120129 (2023)
[j37]
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Matthew Leming, Esther E. Bron, Rose Bruffaerts, Yangming Ou, Juan Eugenio Iglesias, Randy L. Gollub, Hyungsoon Im:
Challenges of implementing computer-aided diagnostic models for neuroimages in a clinical setting. npj Digit. Medicine 6 (2023)
[j36]
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Junshen Xu, Daniel Moyer, Borjan A. Gagoski, Juan Eugenio Iglesias, Patricia Ellen Grant, Polina Golland, Elfar Adalsteinsson:
NeSVoR: Implicit Neural Representation for Slice-to-Volume Reconstruction in MRI. IEEE Trans. Medical Imaging 42(6): 1707-1719 (2023)
2022
[j35]
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Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical Image Anal. 75: 102265 (2022)
[j34]
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Alessia Atzeni, Loïc Peter, Eleanor D. Robinson, Emily Blackburn, Juri Althonayan, Daniel C. Alexander, Juan Eugenio Iglesias:
Deep active learning for suggestive segmentation of biomedical image stacks via optimisation of Dice scores and traced boundary length. Medical Image Anal. 81: 102549 (2022)
[j33]
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Adrià Casamitjana, Juan Eugenio Iglesias:
High-resolution atlasing and segmentation of the subcortex: Review and perspective on challenges and opportunities created by machine learning. NeuroImage 263: 119616 (2022)
[j32]
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Nalini M. Singh, Jordan B. Harrod, Sandya Subramanian, Mitchell B. Robinson, Ken Chang, Suheyla Cetin Karayumak, Adrian Vasile Dalca, Simon B. Eickhoff, Michael Fox, Loraine Franke, Polina Golland, Daniel Haehn, Juan Eugenio Iglesias, Lauren J. O'Donnell, Yangming Ou, Yogesh Rathi, Shan H. Siddiqi, Haoqi Sun, M. Brandon Westover, Susan L. Whitfield-Gabrieli, Randy L. Gollub:
How Machine Learning is Powering Neuroimaging to Improve Brain Health. Neuroinformatics 20(4): 943-964 (2022)
[j31]
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Malte Hoffmann, Benjamin Billot, Douglas N. Greve, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images. IEEE Trans. Medical Imaging 41(3): 543-558 (2022)
2021
[j30]
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Donatas Sederevicius, Dídac Vidal-Piñeiro, Øystein Sørensen, Koenraad Van Leemput, Juan Eugenio Iglesias, Adrian V. Dalca, Douglas N. Greve, Bruce Fischl, Atle Bjørnerud, Kristine B. Walhovd, Anders M. Fjell:
Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer - ASEG and SAMSEG. NeuroImage 237: 118113 (2021)
[j29]
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  - journals/neuroimage/IglesiasBBTCGAG21
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Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, R. Gilberto González, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl:
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. NeuroImage 237: 118206 (2021)
[j28]
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  - journals/neuroimage/GreveBCHHDFIA21
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Douglas N. Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Bruce Fischl, Juan Eugenio Iglesias, Jean C. Augustinack:
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. NeuroImage 244: 118610 (2021)
[j27]
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Chao J. Liu, William Ammon, Viviana Siless, Morgan Fogarty, Ruopeng Wang, Alessia Atzeni, Iman Aganj, Juan Eugenio Iglesias, Lilla Zöllei, Bruce Fischl, Jeremy D. Schmahmann, Hui Wang:
Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution. NeuroImage 244: 118627 (2021)
[j26]
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Loïc Peter, Daniel C. Alexander, Caroline Magnain, Juan Eugenio Iglesias:
Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms. IEEE Trans. Medical Imaging 40(8): 2053-2065 (2021)
2020
[j25]
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Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5(55): 2705 (2020)
[j24]
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  - journals/neuroimage/BrownPCFIMMS20
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Emma M. Brown, Meghan E. Pierce, Dustin C. Clark, Bruce R. Fischl, Juan Eugenio Iglesias, William P. Milberg, Regina E. McGlinchey, David H. Salat:
Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners. NeuroImage 210: 116563 (2020)
[j23]
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  - journals/neuroimage/ZolleiIOGF20
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Lilla Zöllei, Juan Eugenio Iglesias, Yangming Ou, Patricia Ellen Grant, Bruce Fischl:
Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. NeuroImage 218: 116946 (2020)
[j22]
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Benjamin Billot, Martina Bocchetta, Emily Todd, Adrian V. Dalca, Jonathan D. Rohrer, Juan Eugenio Iglesias:
Automated segmentation of the hypothalamus and associated subunits in brain MRI. NeuroImage 223: 117287 (2020)
2018
[j21]
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  - journals/fini/Arganda-Carreras18
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Ignacio Arganda-Carreras, Tudor Manoliu, Nicolas Mazuras, Florian Schulze, Juan Eugenio Iglesias, Katja Bühler, Arnim Jenett, François Rouyer, Philippe Andrey:
A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain. Frontiers Neuroinformatics 12: 13 (2018)
[j20]
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Jonas Pichat, Juan Eugenio Iglesias, Tarek A. Yousry, Sébastien Ourselin, Marc Modat:
A Survey of Methods for 3D Histology Reconstruction. Medical Image Anal. 46: 73-105 (2018)
[j19]
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Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed S. Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Medical Image Anal. 50: 127-144 (2018)
[j18]
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Sebastiano Ferraris, Johannes L. van der Merwe, Lennart Van Der Veeken, Ferran Prados, Juan Eugenio Iglesias, Andrew Melbourne, Marco Lorenzi, Marc Modat, Willy Gsell, Jan Deprest, Tom Vercauteren:
A magnetic resonance multi-atlas for the neonatal rabbit brain. NeuroImage 179: 187-198 (2018)
[j17]
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Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso:
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. NeuroImage 183: 314-326 (2018)
2017
[j16]
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Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert Rory Sabuncu, Bruce Fischl:
Mid-space-independent deformable image registration. NeuroImage 152: 158-170 (2017)
[j15]
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Zeynep M. Saygin, Dorit Kliemann, Juan Eugenio Iglesias, André J. W. van der Kouwe, Ellen Boyd, Martin Reuter, Allison Stevens, Koenraad Van Leemput, Alexis McKee, Matthew P. Frosch, Bruce Fischl, Jean C. Augustinack:
High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. NeuroImage 155: 370-382 (2017)
2016
[j14]
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  - journals/neuroimage/WhelanHVZCMPKFZ16
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Christopher D. Whelan, Derrek P. Hibar, Laura S. van Velzen, Anthony S. Zannas, Tania Carrillo-Roa, Katie McMahon, Gautam Prasad, Sinead Kelly, Joshua Faskowitz, Greig I. de Zubicaray, Juan Eugenio Iglesias, Theo G. M. van Erp, Thomas Frodl, Nicholas G. Martin, Margaret J. Wright, Neda Jahanshad, Lianne Schmaal, Philipp G. Sämann, Paul M. Thompson:
Heritability and reliability of automatically segmented human hippocampal formation subregions. NeuroImage 128: 125-137 (2016)
[j13]
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Juan Eugenio Iglesias, Koen Van Leemput, Jean Augustinack, Ricardo Insausti, Bruce Fischl, Martin Reuter:
Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases. NeuroImage 141: 542-555 (2016)
[j12]
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Oula Puonti, Juan Eugenio Iglesias, Koen Van Leemput:
Fast and sequence-adaptive whole-brain segmentation using parametric Bayesian modeling. NeuroImage 143: 235-249 (2016)
2015
[j11]
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Juan Eugenio Iglesias, Mert R. Sabuncu:
Multi-atlas segmentation of biomedical images: A survey. Medical Image Anal. 24(1): 205-219 (2015)
[j10]
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Juan Eugenio Iglesias, Mert Rory Sabuncu, Iman Aganj, Priyanka Bhatt, Christen Casillas, David H. Salat, Adam L. Boxer, Bruce Fischl, Koen Van Leemput:
An algorithm for optimal fusion of atlases with different labeling protocols. NeuroImage 106: 451-463 (2015)
[j9]
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Paul A. Yushkevich, Robert S. C. Amaral, Jean C. Augustinack, Andrew R. Bender, Jeffrey D. Bernstein, Marina Boccardi, Martina Bocchetta, Alison C. Burggren, Valerie A. Carr, M. Mallar Chakravarty, Gaël Chételat, Ana M. Daugherty, Lila Davachi, Song-Lin Ding, Arne D. Ekstrom, Mirjam I. Geerlings, Abdul Hassan, Yushan Huang, Juan Eugenio Iglesias, Renaud La Joie, Geoffrey A. Kerchner, Karen F. LaRocque, Laura A. Libby, Nikolai Malykhin, Susanne G. Mueller, Rosanna K. Olsen, Daniela J. Palombo, Mansi B. Parekh:
Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol. NeuroImage 111: 526-541 (2015)
[j8]
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Juan Eugenio Iglesias, Koen Van Leemput, Priyanka Bhatt, Christen Casillas, Shubir Dutt, Norbert Schuff, Diana Truran-Sacrey, Adam L. Boxer, Bruce Fischl:
Bayesian segmentation of brainstem structures in MRI. NeuroImage 113: 184-195 (2015)
[j7]
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Juan Eugenio Iglesias, Jean C. Augustinack, Khoa Nguyen, Christopher M. Player, Allison Player, Michelle Wright, Nicole Roy, Matthew P. Frosch, Ann C. McKee, Lawrence L. Wald, Bruce Fischl, Koen Van Leemput:
A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. NeuroImage 115: 117-137 (2015)
2013
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Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
Improved inference in Bayesian segmentation using Monte Carlo sampling: Application to hippocampal subfield volumetry. Medical Image Anal. 17(7): 766-778 (2013)
[j5]
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Juan Eugenio Iglesias, Mert Rory Sabuncu, Koen Van Leemput:
A unified framework for cross-modality multi-atlas segmentation of brain MRI. Medical Image Anal. 17(8): 1181-1191 (2013)
[j4]
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Cheng-Yi Liu, Juan Eugenio Iglesias, Zhuowen Tu:
Deformable Templates Guided Discriminative Models for Robust 3D Brain MRI Segmentation. Neuroinformatics 11(4): 447-468 (2013)
2012
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Juan Eugenio Iglesias, Paul M. Thompson, Cheng-Yi Liu, Zhuowen Tu:
Fast Approximate Stochastic Tractography. Neuroinformatics 10(1): 5-17 (2012)
2011
[j2]
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Juan Eugenio Iglesias, Cheng-Yi Liu, Paul M. Thompson, Zhuowen Tu:
Robust Brain Extraction Across Datasets and Comparison With Publicly Available Methods. IEEE Trans. Medical Imaging 30(9): 1617-1634 (2011)
2009
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Juan Eugenio Iglesias, Nico Karssemeijer:
Robust Initial Detection of Landmarks in Film-Screen Mammograms Using Multiple FFDM Atlases. IEEE Trans. Medical Imaging 28(11): 1815-1824 (2009)

Conference and Workshop Papers

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2024
[c50]
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Adrià Casamitjana, Juan Eugenio Iglesias, Raúl Tudela, Aida Niñerola-Baizan, Roser Sala-Llonch:
Jump: A Joint Multimodal Registration Pipeline for Neuroimaging with Minimal Preprocessing. ISBI 2024: 1-5
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Pablo Laso, Stefano Cerri, Annabel Sorby-Adams, Jennifer Guo, Farrah Mateen, Philipp Goebl, Jiaming Wu, Peirong Liu, Hongwei Bran Li, Sean I. Young, Benjamin Billot, Oula Puonti, Gordon Sze, Sam Payabavash, Adam DeHavenon, Kevin N. Sheth, Matthew S. Rosen, John Kirsch, Nicola Strisciuglio, Jelmer M. Wolterink, Arman Eshaghi, Frederik Barkhof, W. Taylor Kimberly, Juan Eugenio Iglesias:
Quantifying White Matter Hyperintensity and Brain Volumes in Heterogeneous Clinical and Low-Field Portable MRI. ISBI 2024: 1-5
[c48]
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Hongwei Bran Li, Matthew S. Rosen, Shahin Nasr, Juan Eugenio Iglesias:
Resolution- and Stimulus-Agnostic Super-Resolution of Ultra-High-Field Functional MRI: Application to Visual Studies. ISBI 2024: 1-5
2023
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Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias:
Cortical Analysis of Heterogeneous Clinical Brain MRI Scans for Large-Scale Neuroimaging Studies. MICCAI (8) 2023: 35-45
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Henry F. J. Tregidgo, Sonja Soskic, Mark D. Olchanyi, Juri Althonayan, Benjamin Billot, Chiara Maffei, Polina Golland, Anastasia Yendiki, Daniel C. Alexander, Martina Bocchetta, Jonathan D. Rohrer, Juan Eugenio Iglesias:
Domain-Agnostic Segmentation of Thalamic Nuclei from Joint Structural and Diffusion MRI. MICCAI (8) 2023: 247-257
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Hannah Spitzer, Mathilde Ripart, Abdulah Fawaz, Logan Z. J. Williams, Emma C. Robinson, Juan Eugenio Iglesias, Sophie Adler, Konrad Wagstyl:
Robust and Generalisable Segmentation of Subtle Epilepsy-Causing Lesions: A Graph Convolutional Approach. MICCAI (8) 2023: 420-428
2022
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Junshen Xu, Daniel Moyer, Patricia Ellen Grant, Polina Golland, Juan Eugenio Iglesias, Elfar Adalsteinsson:
SVoRT: Iterative Transformer for Slice-to-Volume Registration in Fetal Brain MRI. MICCAI (6) 2022: 3-13
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Benjamin Billot, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Juan Eugenio Iglesias:
Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and No Retraining. MICCAI (5) 2022: 538-548
[c42]
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Andrew Hoopes, Juan Eugenio Iglesias, Bruce Fischl, Douglas N. Greve, Adrian V. Dalca:
TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces. MIDL 2022: 508-520
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Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl:
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. WBIR 2022: 103-115
2021
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Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
Learning Mri Contrast-Agnostic Registration. ISBI 2021: 899-903
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Benjamin Billot, Stefano Cerri, Koen Van Leemput, Adrian V. Dalca, Juan Eugenio Iglesias:
Joint Segmentation Of Multiple Sclerosis Lesions And Brain Anatomy In MRI Scans Of Any Contrast And Resolution With CNNs. ISBI 2021: 1971-1974
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Adrià Casamitjana, Matteo Mancini, Juan Eugenio Iglesias:
Synth-by-Reg (SbR): Contrastive Learning for Synthesis-Based Registration of Paired Images. SASHIMI@MICCAI 2021: 44-54
2020
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Iman Aganj, Aina Frau-Pascual, Juan Eugenio Iglesias, Anastasia Yendiki, Jean C. Augustinack, David H. Salat, Bruce Fischl:
Compensatory Brain Connection Discovery in Alzheimer's Disease. ISBI 2020: 283-287
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Benjamin Billot, Eleanor D. Robinson, Adrian V. Dalca, Juan Eugenio Iglesias:
Partial Volume Segmentation of Brain MRI Scans of Any Resolution and Contrast. MICCAI (7) 2020: 177-187
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Henry F. J. Tregidgo, Adrià Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias:
3D Reconstruction and Segmentation of Dissection Photographs for MRI-Free Neuropathology. MICCAI (5) 2020: 204-214
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Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca:
A Learning Strategy for Contrast-agnostic MRI Segmentation. MIDL 2020: 75-93
[c33]
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Evan M. Yu, Juan Eugenio Iglesias, Adrian V. Dalca, Mert R. Sabuncu:
An Auto-Encoder Strategy for Adaptive Image Segmentation. MIDL 2020: 881-891
2019
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Juan Eugenio Iglesias, Koen Van Leemput, Polina Golland, Anastasia Yendiki:
Joint Inference on Structural and Diffusion MRI for Sequence-Adaptive Bayesian Segmentation of Thalamic Nuclei with Probabilistic Atlases. IPMI 2019: 767-779
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Matteo Mancini, Shauna Crampsie, David L. Thomas, Zane Jaunmuktane, Janice L. Holton, Juan Eugenio Iglesias:
Hierarchical Joint Registration of Tissue Blocks With Soft Shape Constraints For Large-Scale Histology of The Human Brain. ISBI 2019: 666-669
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Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias:
Unsupervised Deep Learning for Bayesian Brain MRI Segmentation. MICCAI (3) 2019: 356-365
2018
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Stephen Morrell, Zbigniew Wojna, Can Son Khoo, Sébastien Ourselin, Juan Eugenio Iglesias:
Large-Scale Mammography CAD with Deformable Conv-Nets. RAMBO+BIA+TIA@MICCAI 2018: 64-72
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Juan Eugenio Iglesias, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren:
Model-Based Refinement of Nonlinear Registrations in 3D Histology Reconstruction. MICCAI (2) 2018: 147-155
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Alessia Atzeni, Marnix Jansen, Sébastien Ourselin, Juan Eugenio Iglesias:
A Probabilistic Model Combining Deep Learning and Multi-atlas Segmentation for Semi-automated Labelling of Histology. MICCAI (2) 2018: 219-227
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Marcel Tella-Amo, Loïc Peter, Dzhoshkun I. Shakir, Jan Deprest, Danail Stoyanov, Juan Eugenio Iglesias, Tom Vercauteren, Sébastien Ourselin:
Technical note: probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking. Application to fetoscopy. Medical Imaging: Image-Guided Procedures 2018: 105760I
2017
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Jonas Pichat, Juan Eugenio Iglesias, Sotiris Nousias, Tarek A. Yousry:
Part-to-Whole Registration of Histology and MRI Using Shape Elements. ICCV Workshops 2017: 107-115
[c24]
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Juan Eugenio Iglesias:
Globally Optimal Coupled Surfaces for Semi-automatic Segmentation of Medical Images. IPMI 2017: 610-621
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Juan Eugenio Iglesias, Sebastiano Ferraris, Marc Modat, Willy Gsell, Jan Deprest, Johannes L. van der Merwe, Tom Vercauteren:
Template-Free Estimation of Intracranial Volume: A Preterm Birth Animal Model Study. FIFI/OMIA@MICCAI 2017: 3-13
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Juan Eugenio Iglesias, Garikoitz Lerma-Usabiaga, Luis C. García-Peraza-Herrera, Sara Martinez, Pedro M. Paz-Alonso:
Retrospective Head Motion Estimation in Structural Brain MRI with 3D CNNs. MICCAI (2) 2017: 314-322
2016
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Juan Eugenio Iglesias, Pedro M. Paz-Alonso, Garikoitz Lerma-Usabiaga, Ricardo Insausti, Karla L. Miller, César Caballero-Gaudes:
Simultaneous Bayesian correction of slab boundary artifacts and bias field for high resolution ex vivo MRI. ISBI 2016: 1384-1387
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Ben Glocker, Ender Konukoglu, Ioannis Lavdas, Juan Eugenio Iglesias, Eric O. Aboagye, Andrea G. Rockall, Daniel Rueckert:
Correction of Fat-Water Swaps in Dixon MRI. MICCAI (3) 2016: 536-543
2015
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Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert R. Sabuncu, Bruce Fischl:
Mid-Space-Independent Symmetric Data Term for Pairwise Deformable Image Registration. MICCAI (2) 2015: 263-271
2014
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Christian Thode Larsen, Juan Eugenio Iglesias, Koen Van Leemput:
N3 Bias Field Correction Explained as a Bayesian Modeling Method. BAMBI 2014: 1-12
2013
[c17]
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Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
A Probabilistic, Non-parametric Framework for Inter-modality Label Fusion. MICCAI (3) 2013: 576-583
[c16]
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Juan Eugenio Iglesias, Ender Konukoglu, Darko Zikic, Ben Glocker, Koen Van Leemput, Bruce Fischl:
Is Synthesizing MRI Contrast Useful for Inter-modality Analysis? MICCAI (1) 2013: 631-638
[c15]
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Oula Puonti, Juan Eugenio Iglesias, Koen Van Leemput:
Fast, Sequence Adaptive Parcellation of Brain MR Using Parametric Models. MICCAI (1) 2013: 727-734
2012
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Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
A generative model for multi-atlas segmentation across modalities. ISBI 2012: 888-891
[c13]
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Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
Incorporating Parameter Uncertainty in Bayesian Segmentation Models: Application to Hippocampal Subfield Volumetry. MICCAI (3) 2012: 50-57
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Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
A Generative Model for Probabilistic Label Fusion of Multimodal Data. MBIA 2012: 115-133
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Cheng-Yi Liu, Juan Eugenio Iglesias, Zhuowen Tu:
Pictorial multi-atlas segmentation of brain MRI. MMBIA 2012: 65-70
2011
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Juan Eugenio Iglesias, Ender Konukoglu, Albert Montillo, Zhuowen Tu, Antonio Criminisi:
Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active Learning. IPMI 2011: 25-36
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Albert Montillo, Jamie Shotton, John M. Winn, Juan Eugenio Iglesias, Dimitris N. Metaxas, Antonio Criminisi:
Entangled Decision Forests and Their Application for Semantic Segmentation of CT Images. IPMI 2011: 184-196
[c8]
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Juan Eugenio Iglesias, Jiayan Jiang, Cheng-Yi Liu, Zhuowen Tu:
Classification of Alzheimer's Disease Using a Self-Smoothing Operator. MICCAI (3) 2011: 58-65
[c7]
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William Speier, Juan Eugenio Iglesias, Leila El-Kara, Zhuowen Tu, Corey W. Arnold:
Robust Skull Stripping of Clinical Glioblastoma Multiforme Data. MICCAI (3) 2011: 659-666
2010
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Cheng-Yi Liu, Juan Eugenio Iglesias, Arthur W. Toga, Zhuowen Tu:
Fusing adaptive atlas and informative features for robust 3D brain image segmentation. ISBI 2010: 848-851
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Juan Eugenio Iglesias, Paul M. Thompson, Cheng-Yi Liu, Zhuowen Tu:
Discretizing stochastic tractography: a fast implementation. ISBI 2010: 1381-1384
[c4]
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Juan Eugenio Iglesias, Ivo D. Dinov, Jaskaran Singh, Gregory Tong, Zhuowen Tu:
Synthetic MRI Signal Standardization: Application to Multi-atlas Analysis. MICCAI (3) 2010: 81-88
[c3]
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Juan Eugenio Iglesias, Cheng-Yi Liu, Paul M. Thompson, Zhuowen Tu:
Agreement-Based Semi-supervised Learning for Skull Stripping. MICCAI (3) 2010: 147-154
2009
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Juan Eugenio Iglesias, Krupa Rocks, Neda Jahanshad, Enrique Frías-Martínez, Lewellyn P. Andrada, Alex A. T. Bui:
Tracking medication information across medical records. AMIA 2009
2007
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Juan Eugenio Iglesias, Marleen de Bruijne, Marco Loog, François Lauze, Mads Nielsen:
A Family of Principal Component Analyses for Dealing with Outliers. MICCAI (2) 2007: 178-185

Data and Artifacts

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2020
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Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. Zenodo, 2020

Informal and Other Publications

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What is the meaning of the colors in the publication lists?

2024
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Adria Casamitjana, Juan Eugenio Iglesias, Raúl Tudela, Aida Niñerola-Baizan, Roser Sala-Llonch:
JUMP: A joint multimodal registration pipeline for neuroimaging with minimal preprocessing. CoRR abs/2401.14250 (2024)
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  - journals/corr/abs-2401-17104
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Lívia Rodrigues, Martina Bocchetta, Oula Puonti, Douglas N. Greve, Ana Carolina Londe, Marcondes França, Simone Appenzeller, Juan Eugenio Iglesias, Letícia Rittner:
H-SynEx: Using synthetic images and ultra-high resolution ex vivo MRI for hypothalamus subregion segmentation. CoRR abs/2401.17104 (2024)
[i50]
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  - journals/corr/abs-2403-06227
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Peirong Liu, Oula Puonti, Annabel Sorby-Adams, William T. Kimberly, Juan Eugenio Iglesias:
PEPSI: Pathology-Enhanced Pulse-Sequence-Invariant Representations for Brain MRI. CoRR abs/2403.06227 (2024)
[i49]
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  - journals/corr/abs-2403-13996
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Xiaoling Hu, Annabel Sorby-Adams, Frederik Barkhof, W. Taylor Kimberly, Oula Puonti, Juan Eugenio Iglesias:
P-Count: Persistence-based Counting of White Matter Hyperintensities in Brain MRI. CoRR abs/2403.13996 (2024)
[i48]
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  - journals/corr/abs-2404-15009
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Anahita Fathi Kazerooni, Nastaran Khalili, Deep Gandhi, Xinyang Liu, Zhifan Jiang, Syed Muhammed Anwar, Jake Albrecht, Maruf Adewole, Udunna Anazodo, Hannah Anderson, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Austin J. Borja, Evan Calabrese, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Ariana Familiar, Keyvan Farahani, Anurag Gottipati, Debanjan Haldar, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Johansen, Blaise V. Jones, Neda Khalili, Florian Kofler, Dominic LaBella, Hollie Anne Lai, Koen Van Leemput, Hongwei Bran Li, Nazanin Maleki, Aaron S. McAllister, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Khanak K. Nandolia, Julija Pavaine, Marie Piraud, Tina Poussaint, Sanjay P. Prabhu, Zachary Reitman, Andres Felipe Rodriguez, Jeffrey D. Rudie, Mariana Sanchez-Montano, Ibraheem Salman Shaikh, Lubdha M. Shah, Nakul Sheth, Russel Taki Shinohara, Wenxin Tu, Karthik Viswanathan, Chunhao Wang, Jeffrey B. Ware, Benedikt Wiestler, Walter I. Wiggins, Anna Zapaishchykova, Mariam Aboian, Miriam Bornhorst, Peter de Blank, Michelle Deutsch, Maryam Fouladi, Lindsey Hoffman, Benjamin H. Kann, Margot Lazow, Leonie Mikael, Ali Nabavizadeh, Roger J. Packer, Spyridon Bakas, Adam C. Resnick, Brian Rood, Arastoo Vossough, Marius George Linguraru:
The Brain Tumor Segmentation in Pediatrics (BraTS-PEDs) Challenge: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs). CoRR abs/2404.15009 (2024)
[i47]
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  - journals/corr/abs-2404-16781
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Karthik Gopinath, Xiaoling Hu, Malte Hoffmann, Oula Puonti, Juan Eugenio Iglesias:
Registration by Regression (RbR): a framework for interpretable and flexible atlas registration. CoRR abs/2404.16781 (2024)
[i46]
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  - journals/corr/abs-2405-09787
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Dominic LaBella, Ujjwal Baid, Omaditya Khanna, Shan McBurney-Lin, Ryan McLean, Pierre Nedelec, Arif Rashid, Nourel Hoda Tahon, Talissa Altes, Radhika Bhalerao, Yaseen Dhemesh, Devon Godfrey, Fathi Hilal, Scott Floyd, Anastasia Janas, Anahita Fathi Kazerooni, John Kirkpatrick, Collin Kent, Florian Kofler, Kevin Leu, Nazanin Maleki, Bjoern H. Menze, Maxence Pajot, Zachary J. Reitman, Jeffrey D. Rudie, Rachit Saluja, Yury Velichko, Chunhao Wang, Pranav Warman, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Syed Muhammad Anwar, Timothy Bergquist, Sully Chen, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Nastaran Khalili, Juan Eugenio Iglesias, Zhifan Jiang, Elaine Johanson, Koen Van Leemput, Hongwei Bran Li, Marius George Linguraru, Xinyang Liu, Aria Mahtabfar, Zeke Meier, Ahmed W. Moawad, John Mongan, Marie Piraud, Russell Takeshi Shinohara, Walter F. Wiggins, Aly H. Abayazeed, Rachel Akinola, András Jakab, Michel Bilello, Maria Correia de Verdier, Priscila Crivellaro, Christos Davatzikos, Keyvan Farahani, John B. Freymann, Christopher Hess, Raymond Y. Huang, Philipp Lohmann, Mana Moassefi, Matthew W. Pease, Philipp Vollmuth, Nico Sollmann, David Diffley, Khanak K. Nandolia, Daniel I. Warren, Ali Hussain, Pascal Fehringer, Yulia Bronstein, Lisa Deptula, Evan G. Stein, Mahsa Taherzadeh, Eduardo Portela de Oliveira, Aoife Haughey, Marinos Kontzialis, Luca Saba, Benjamin Turner, Melanie M. T. Brüßeler, Shehbaz Ansari, Athanasios Gkampenis, David Maximilian Weiss, Aya Mansour, Islam H. Shawali, Nikolay Yordanov, Joel M. Stein, Roula Hourani, Mohammed Yahya Moshebah, Ahmed Magdy Abouelatta, Tanvir Rizvi, Klara Willms, Dann C. Martin, Abdullah Okar:
Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge. CoRR abs/2405.09787 (2024)
[i45]
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Hongwei Bran Li, Cheng Ouyang, Tamaz Amiranashvili, Matthew S. Rosen, Bjoern H. Menze, Juan Eugenio Iglesias:
Probabilistic Contrastive Learning with Explicit Concentration on the Hypersphere. CoRR abs/2405.16460 (2024)
[i44]
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  - journals/corr/abs-2405-18368
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Maria Correia de Verdier, Rachit Saluja, Louis Gagnon, Dominic LaBella, Ujjwal Baid, Nourel Hoda Tahon, Martha Foltyn-Dumitru, Jikai Zhang, Maram Alafif, Saif Baig, Ken Chang, Gennaro D'Anna, Lisa Deptula, Diviya Gupta, Muhammad Ammar Haider, Ali Hussain, Michael Iv, Marinos Kontzialis, Paul Manning, Farzan Moodi, Teresa Nunes, Aaron Simon, Nico Sollmann, David Vu, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Rongrong Chai, Verena Chung, Shahriar Faghani, Keyvan Farahani, Anahita Fathi Kazerooni, Juan Eugenio Iglesias, Florian Kofler, Hongwei Li, Marius George Linguraru, Bjoern H. Menze, Ahmed W. Moawad, Yury Velichko, Benedikt Wiestler, Talissa Altes, Patil Basavasagar, Martin Bendszus, Gianluca Brugnara, Jaeyoung Cho, Yaseen Dhemesh, Brandon K. K. Fields, Filip Garrett, Jaime Gass, Lubomir M. Hadjiiski, Jona A. Hattangadi-Gluth, Christopher Hess, Jessica L. Houk, Edvin Isufi, Lester J. Layfield, George Mastorakos, John Mongan, Pierre Nedelec, Uyen Nguyen, Sebastian Oliva, Matthew W. Pease, Aditya Rastogi, Jason Sinclair, Robert X. Smith, Leo P. Sugrue, Jonathan Thacker, Igor Vidic, Javier E. Villanueva-Meyer, Nathan S. White, Mariam Aboian, Gian Marco Conte, Anders M. Dale, Mert R. Sabuncu, Tyler M. Seibert, Brent Weinberg, Aly H. Abayazeed, Raymond Y. Huang, Sevcan Turk, Andreas M. Rauschecker, Nikdokht Farid, Philipp Vollmuth, Ayman Nada, Spyridon Bakas, Evan Calabrese, Jeffrey D. Rudie:
The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRI. CoRR abs/2405.18368 (2024)
[i43]
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  - journals/corr/abs-2406-19492
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Lívia Rodrigues, Martina Bocchetta, Oula Puonti, Douglas N. Greve, Ana Carolina Londe, Marcondes França, Simone Appenzeller, Letícia Rittner, Juan Eugenio Iglesias:
High-resolution segmentations of the hypothalamus and its subregions for training of segmentation models. CoRR abs/2406.19492 (2024)
[i42]
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  - journals/corr/abs-2407-08855
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Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu, Debanjan Haldar, Zhifan Jiang, Anna Zapaishchykova, Julija Pavaine, Lubdha M. Shah, Blaise V. Jones, Nakul Sheth, Sanjay P. Prabhu, Aaron S. McAllister, Wenxin Tu, Khanak K. Nandolia, Andres Felipe Rodriguez, Ibraheem Salman Shaikh, Mariana Sanchez-Montano, Hollie Anne Lai, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Hannah Anderson, Syed Muhammed Anwar, Alejandro Aristizabal, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Austin J. Borja, Evan Calabrese, Verena Chung, Gian Marco Conte, James A. Eddy, Ivan Ezhov, Ariana M. Familiar, Keyvan Farahani, Deep Gandhi, Anurag Gottipati, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Elaine, Alexandros Karargyris, Hasan Kassem, Neda Khalili, Florian Kofler, Dominic LaBella, Koen Van Leemput, Hongwei Li, Nazanin Maleki, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Sarthak Pati, Marie Piraud, Tina Poussaint, Zachary J. Reitman, Jeffrey D. Rudie, Rachit Saluja, Micah J. Sheller, Russell Takeshi Shinohara, Karthik Viswanathan, Chunhao Wang, Benedikt Wiestler, Walter F. Wiggins, Christos Davatzikos, Phillip B. Storm, Miriam Bornhorst, Roger J. Packer, Trent Hummel, Peter de Blank, Lindsey Hoffman, Mariam Aboian, Ali Nabavizadeh, Jeffrey B. Ware, Benjamin H. Kann, Brian Rood, Adam C. Resnick, Spyridon Bakas, Arastoo Vossough, Marius George Linguraru:
BraTS-PEDs: Results of the Multi-Consortium International Pediatric Brain Tumor Segmentation Challenge 2023. CoRR abs/2407.08855 (2024)
2023
[i41]
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  - journals/corr/abs-2305-01827
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Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias:
Cortical analysis of heterogeneous clinical brain MRI scans for large-scale neuroimaging studies. CoRR abs/2305.01827 (2023)
[i40]
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  - journals/corr/abs-2305-03413
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Henry F. J. Tregidgo, Sonja Soskic, Mark D. Olchanyi, Juri Althonayan, Benjamin Billot, Chiara Maffei, Polina Golland, Anastasia Yendiki, Daniel C. Alexander, Martina Bocchetta, Jonathan D. Rohrer, Juan Eugenio Iglesias:
Domain-agnostic segmentation of thalamic nuclei from joint structural and diffusion MRI. CoRR abs/2305.03413 (2023)
[i39]
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  - journals/corr/abs-2305-07642
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Dominic LaBella, Maruf Adewole, Michelle Alonso-Basanta, Talissa Altes, Syed Muhammad Anwar, Ujjwal Baid, Timothy Bergquist, Radhika Bhalerao, Sully Chen, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Devon Godfrey, Fathi Hilal, Ariana Familiar, Keyvan Farahani, Juan Eugenio Iglesias, Zhifan Jiang, Elaine Johanson, Anahita Fathi Kazerooni, Collin Kent, John Kirkpatrick, Florian Kofler, Koen Van Leemput, Hongwei Bran Li, Xinyang Liu, Aria Mahtabfar, Shan McBurney-Lin, Ryan McLean, Zeke Meier, Ahmed W. Moawad, John Mongan, Pierre Nedelec, Maxence Pajot, Marie Piraud, Arif Rashid, Zachary Reitman, Russell Takeshi Shinohara, Yury Velichko, Chunhao Wang, Pranav I. Warman, Walter I. Wiggins, Mariam Aboian, Jake Albrecht, Udunna Anazodo, Spyridon Bakas, Adam E. Flanders, Anastasia Janas, Goldey Khanna, Marius George Linguraru, Bjoern H. Menze, Ayman Nada, Andreas M. Rauschecker, Jeffrey D. Rudie, Nourel Hoda Tahon, Javier E. Villanueva-Meyer, Benedikt Wiestler, Evan Calabrese:
The ASNR-MICCAI Brain Tumor Segmentation (BraTS) Challenge 2023: Intracranial Meningioma. CoRR abs/2305.07642 (2023)
[i38]
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  - journals/corr/abs-2305-08992
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Florian Kofler, Felix Meissen, Felix Steinbauer, Robert Graf, Eva Oswald, Ezequiel de la Rosa, Hongwei Bran Li, Ujjwal Baid, Florian A. Hölzl, Özgün Turgut, Izabela Horvath, Diana Waldmannstetter, Christina Bukas, Maruf Adewole, Syed Muhammad Anwar, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Gian Marco Conte, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Juan Eugenio Iglesias, Koen Van Leemput, Spyridon Bakas, Daniel Rueckert, Benedikt Wiestler, Ivan Ezhov, Marie Piraud, Bjoern H. Menze:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Local Synthesis of Healthy Brain Tissue via Inpainting. CoRR abs/2305.08992 (2023)
[i37]
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  - journals/corr/abs-2305-09011
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Hongwei Bran Li, Gian Marco Conte, Syed Muhammad Anwar, Florian Kofler, Koen Van Leemput, Marie Piraud, Ivan Ezhov, Felix Meissen, Maruf Adewole, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Thomas Yu, Ujjwal Baid, Spyridon Bakas, Marius George Linguraru, Bjoern H. Menze, Juan Eugenio Iglesias, Benedikt Wiestler:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn). CoRR abs/2305.09011 (2023)
[i36]
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  - journals/corr/abs-2305-17033
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Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu, Debanjan Haldar, Zhifan Jiang, Syed Muhammad Anwar, Jake Albrecht, Maruf Adewole, Udunna Anazodo, Hannah Anderson, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Evan Calabrese, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Ariana Familiar, Keyvan Farahani, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Johanson, Florian Kofler, Dominic LaBella, Koen Van Leemput, Hongwei Bran Li, Nazanin Maleki, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Marie Piraud, Tina Poussaint, Zachary Reitman, Jeffrey D. Rudie, Ibraheem Salman Shaikh, Russell Taki Shinohara, Wenxin Tu, Karthik Viswanathan, Chunhao Wang, Jeffrey B. Ware, Benedikt Wiestler, Walter I. Wiggins, Anna Zapaishchykova, Mariam Aboian, Miriam Bornhorst, Peter de Blank, Michelle Deutsch, Maryam Fouladi, Lindsey Hoffman, Benjamin H. Kann, Margot Lazow, Leonie Mikael, Ali Nabavizadeh, Roger J. Packer, Adam C. Resnick, Brian Rood, Arastoo Vossough, Spyridon Bakas, Marius George Linguraru:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs). CoRR abs/2305.17033 (2023)
[i35]
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  - journals/corr/abs-2305-19369
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Maruf Adewole, Jeffrey D. Rudie, Anu Gbadamosi, Oluyemisi Toyobo, Raymond Confidence, Dong Zhang, Olubukola Omidiji, Rachel Akinola, Mohammad Abba Suwaid, Adaobi Emegoakor, Nancy Ojo, Kenneth Aguh, Chinasa Kalaiwo, Gabriel Babatunde, Afolabi Ogunleye, Yewande Gbadamosi, Kator Iorpagher, Evan Calabrese, Mariam Aboian, Marius George Linguraru, Jake Albrecht, Benedikt Wiestler, Florian Kofler, Anastasia Janas, Dominic LaBella, Anahita Fathi Kazerooni, Hongwei Bran Li, Juan Eugenio Iglesias, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Koen Van Leemput, Christina Bukas, Marie Piraud, Gian Marco Conte, Elaine Johanson, Zeke Meier, Bjoern H. Menze, Ujjwal Baid, Spyridon Bakas, Farouk Dako, Abiodun Fatade, Udunna Anazodo:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Glioma Segmentation in Sub-Saharan Africa Patient Population (BraTS-Africa). CoRR abs/2305.19369 (2023)
[i34]
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  - journals/corr/abs-2306-01375
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Hannah Spitzer, Mathilde Ripart, Abdulah Fawaz, Logan Z. J. Williams, MELD project, Emma C. Robinson, Juan Eugenio Iglesias, Sophie Adler, Konrad Wagstyl:
Robust and Generalisable Segmentation of Subtle Epilepsy-causing Lesions: a Graph Convolutional Approach. CoRR abs/2306.01375 (2023)
[i33]
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  - journals/corr/abs-2309-13777
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Matthew G. French, Gonzalo D. Maso Talou, Thiranja P. Babarenda Gamage, Martyn P. Nash, Poul M. F. Nielsen, Anthony J. Doyle, Juan Eugenio Iglesias, Yaël Balbastre, Sean I. Young:
Diffeomorphic Multi-Resolution Deep Learning Registration for Applications in Breast MRI. CoRR abs/2309.13777 (2023)
[i32]
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  - journals/corr/abs-2311-08371
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Adrià Casamitjana, Roser Sala-Llonch, Karim Lekadir, Juan Eugenio Iglesias:
USLR: an open-source tool for unbiased and smooth longitudinal registration of brain MR. CoRR abs/2311.08371 (2023)
[i31]
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  - journals/corr/abs-2311-14918
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Hongwei Bran Li, Matthew S. Rosen, Shahin Nasr, Juan Eugenio Iglesias:
Resolution- and Stimulus-agnostic Super-Resolution of Ultra-High-Field Functional MRI: Application to Visual Studies. CoRR abs/2311.14918 (2023)
[i30]
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  - journals/corr/abs-2311-16914
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Peirong Liu, Oula Puonti, Xiaoling Hu, Daniel C. Alexander, Juan Eugenio Iglesias:
Brain-ID: Learning Robust Feature Representations for Brain Imaging. CoRR abs/2311.16914 (2023)
[i29]
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  - journals/corr/abs-2312-03102
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Sean I. Young, Yaël Balbastre, Bruce Fischl, Polina Golland, Juan Eugenio Iglesias:
Fully Convolutional Slice-to-Volume Reconstruction for Single-Stack MRI. CoRR abs/2312.03102 (2023)
[i28]
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  - journals/corr/abs-2312-05119
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Pablo Laso, Stefano Cerri, Annabel Sorby-Adams, Jennifer Guo, Farrah Mateen, Philipp Goebl, Jiaming Wu, Peirong Liu, Hongwei Li, Sean I. Young, Benjamin Billot, Oula Puonti, Gordon Sze, Sam Payabavash, Adam DeHavenon, Kevin N. Sheth, Matthew S. Rosen, John Kirsch, Nicola Strisciuglio, Jelmer M. Wolterink, Arman Eshaghi, Frederik Barkhof, W. Taylor Kimberly, Juan Eugenio Iglesias:
Quantifying white matter hyperintensity and brain volumes in heterogeneous clinical and low-field portable MRI. CoRR abs/2312.05119 (2023)
2022
[i27]
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Sean I. Young, Adrian V. Dalca, Enzo Ferrante, Polina Golland, Bruce Fischl, Juan Eugenio Iglesias:
SUD: Supervision by Denoising for Medical Image Segmentation. CoRR abs/2202.02952 (2022)
[i26]
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  - journals/corr/abs-2202-03564
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Juan Eugenio Iglesias, Riana Schleicher, Sonia Laguna, Benjamin Billot, Pamela Schaefer, Brenna McKaig, Joshua N. Goldstein, Kevin N. Sheth, Matthew S. Rosen, W. Taylor Kimberly:
Accurate super-resolution low-field brain MRI. CoRR abs/2202.03564 (2022)
[i25]
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  - journals/corr/abs-2203-01969
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Benjamin Billot, Colin G. Magdamo, Sean E. Arnold, Sudeshna Das, Juan Eugenio Iglesias:
Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining. CoRR abs/2203.01969 (2022)
[i24]
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  - journals/corr/abs-2205-07399
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Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl:
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. CoRR abs/2205.07399 (2022)
[i23]
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  - journals/corr/abs-2206-10802
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Junshen Xu, Daniel Moyer, Patricia Ellen Grant, Polina Golland, Juan Eugenio Iglesias, Elfar Adalsteinsson:
SVoRT: Iterative Transformer for Slice-to-Volume Registration in Fetal Brain MRI. CoRR abs/2206.10802 (2022)
[i22]
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  - journals/corr/abs-2209-02032
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Benjamin Billot, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Juan Eugenio Iglesias:
Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets. CoRR abs/2209.02032 (2022)
[i21]
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  - journals/corr/abs-2212-01577
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Hongwei Bran Li, Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Tamaz Amiranashvili, Jianguo Zhang, Daniel Rueckert, Juan Eugenio Iglesias, Benedikt Wiestler, Bjoern H. Menze:
A Domain-specific Perceptual Metric via Contrastive Self-supervised Representation: Applications on Natural and Medical Images. CoRR abs/2212.01577 (2022)
2021
[i20]
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  - journals/corr/abs-2104-01217
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Loïc Peter, Daniel C. Alexander, Caroline Magnain, Juan Eugenio Iglesias:
Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms. CoRR abs/2104.01217 (2021)
[i19]
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  - journals/corr/abs-2104-14873
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Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. CoRR abs/2104.14873 (2021)
[i18]
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  - journals/corr/abs-2107-09559
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Benjamin Billot, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias:
SynthSeg: Domain Randomisation for Segmentation of Brain MRI Scans of any Contrast and Resolution. CoRR abs/2107.09559 (2021)
[i17]
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  - journals/corr/abs-2107-14449
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Adrià Casamitjana, Matteo Mancini, Juan Eugenio Iglesias:
Synth-by-Reg (SbR): Contrastive learning for synthesis-based registration of paired images. CoRR abs/2107.14449 (2021)
2020
[i16]
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  - journals/corr/abs-2003-01995
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Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca:
A Learning Strategy for Contrast-agnostic MRI Segmentation. CoRR abs/2003.01995 (2020)
[i15]
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  - journals/corr/abs-2004-10221
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Benjamin Billot, Eleanor D. Robinson, Adrian V. Dalca, Juan Eugenio Iglesias:
Partial Volume Segmentation of Brain MRI Scans of any Resolution and Contrast. CoRR abs/2004.10221 (2020)
[i14]
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  - journals/corr/abs-2004-10282
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Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
Learning Multi-Modal Image Registration without Real Data. CoRR abs/2004.10282 (2020)
[i13]
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  - journals/corr/abs-2004-13903
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Evan M. Yu, Juan Eugenio Iglesias, Adrian V. Dalca, Mert R. Sabuncu:
An Auto-Encoder Strategy for Adaptive Image Segmentation. CoRR abs/2004.13903 (2020)
[i12]
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  - journals/corr/abs-2007-01441
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Nalini M. Singh, Juan Eugenio Iglesias, Elfar Adalsteinsson, Adrian V. Dalca, Polina Golland:
Joint Frequency- and Image-Space Learning for Fourier Imaging. CoRR abs/2007.01441 (2020)
[i11]
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  - journals/corr/abs-2009-05596
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Henry F. J. Tregidgo, Adria Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias:
3D Reconstruction and Segmentation of Dissection Photographs for MRI-free Neuropathology. CoRR abs/2009.05596 (2020)
[i10]
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  - journals/corr/abs-2011-02580
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Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. CoRR abs/2011.02580 (2020)
[i9]
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  - journals/corr/abs-2012-13340
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Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl:
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. CoRR abs/2012.13340 (2020)
[i8]
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  - journals/corr/abs-2012-15343
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Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, Jan Deprest, Sébastien Ourselin, Juan Eugenio Iglesias, Tom Vercauteren:
Active Annotation of Informative Overlapping Frames in Video Mosaicking Applications. CoRR abs/2012.15343 (2020)
2019
[i7]
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  - journals/corr/abs-1902-07323
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Stephen Morrell, Zbigniew Wojna, Can Son Khoo, Sébastien Ourselin, Juan Eugenio Iglesias:
Large-scale mammography CAD with Deformable Conv-Nets. CoRR abs/1902.07323 (2019)
[i6]
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  - journals/corr/abs-1903-04352
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Juan Eugenio Iglesias, Koen Van Leemput, Polina Golland, Anastasia Yendiki:
Joint inference on structural and diffusion MRI for sequence-adaptive Bayesian segmentation of thalamic nuclei with probabilistic atlases. CoRR abs/1903.04352 (2019)
[i5]
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  - journals/corr/abs-1904-11319
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Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias:
Unsupervised deep learning for Bayesian brain MRI segmentation. CoRR abs/1904.11319 (2019)
2018
[i4]
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  - journals/corr/abs-1801-05284
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Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed S. Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. CoRR abs/1801.05284 (2018)
[i3]
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  - journals/corr/abs-1806-08634
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Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso:
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. CoRR abs/1806.08634 (2018)
2017
[i2]
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  - journals/corr/abs-1708-08117
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Jonas Pichat, Juan Eugenio Iglesias, Sotiris Nousias, Tarek A. Yousry, Sébastien Ourselin, Marc Modat:
Part-to-whole Registration of Histology and MRI using Shape Elements. CoRR abs/1708.08117 (2017)
2014
[i1]
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  - journals/corr/IglesiasS14
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Juan Eugenio Iglesias, Mert Rory Sabuncu:
Multi-Atlas Segmentation of Biomedical Images: A Survey. CoRR abs/1412.3421 (2014)

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