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- affiliation: University College London (UCL), UK
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2020 – today
- 2023
[j71]Reuben Dorent
, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, M. Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation. Medical Image Anal. 83: 102628 (2023)- [j70]Guotai Wang, Shaoting Zhang, Sharon X. Huang, Tom Vercauteren, Dimitris N. Metaxas:
Editorial for special issue on explainable and generalizable deep learning methods for medical image computing. Medical Image Anal. 84: 102727 (2023) - [i94]Christopher E. Mower, João Moura, Nazanin Zamani Behabadi, Sethu Vijayakumar, Tom Vercauteren, Christos Bergeles:
OpTaS: An Optimization-based Task Specification Library for Trajectory Optimization and Model Predictive Control. CoRR abs/2301.13512 (2023) - [i93]Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren:
Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: Application to surgical imaging. CoRR abs/2302.10927 (2023) - [i92]Luis C. García-Peraza-Herrera, Conor C. Horgan, Sébastien Ourselin, Michael Ebner, Tom Vercauteren:
Hyperspectral Image Segmentation: A Preliminary Study on the Oral and Dental Spectral Image Database (ODSI-DB). CoRR abs/2303.08252 (2023) - [i91]Luis C. García-Peraza-Herrera, Sébastien Ourselin, Tom Vercauteren:
VideoSum: A Python Library for Surgical Video Summarization. CoRR abs/2303.10173 (2023) - [i90]Muhammad Asad, Helena Williams, Indrajeet Mandal, Sarim Ather, Jan Deprest, Jan D'hooge, Tom Vercauteren:
Adaptive Multi-scale Online Likelihood Network for AI-assisted Interactive Segmentation. CoRR abs/2303.13696 (2023) - [i89]Yang Liu, Maxence Boels, Luis C. García-Peraza-Herrera, Tom Vercauteren, Prokar Dasgupta, Alejandro Granados, Sébastien Ourselin:
LoViT: Long Video Transformer for Surgical Phase Recognition. CoRR abs/2305.08989 (2023) - [i88]Andres Diaz-Pinto, Pritesh Mehta, Sachidanand Alle, Muhammad Asad, Richard Brown, Vishwesh Nath, Alvin Ihsani, Michela Antonelli, Daniel Palkovics, Csaba Pinter, Ron Alkalay, Steve Pieper, Holger R. Roth, Daguang Xu, Prerna Dogra, Tom Vercauteren, Andrew Feng, Abood Quraini, Sébastien Ourselin, M. Jorge Cardoso:
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical Images. CoRR abs/2305.10655 (2023) - 2022
- [j69]Charalampos Komninos, Theodoros Pissas, Lina Mekki, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles:
Surgical biomicroscopy-guided intra-operative optical coherence tomography (iOCT) image super-resolution. Int. J. Comput. Assist. Radiol. Surg. 17(5): 877-883 (2022) - [j68]Martin Huber, Sébastien Ourselin, Christos Bergeles, Tom Vercauteren:
Deep homography estimation in dynamic surgical scenes for laparoscopic camera motion extraction. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10(3): 321-329 (2022) - [j67]Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10(4): 409-417 (2022) - [j66]Caspar Gruijthuijsen, Luis C. García-Peraza-Herrera, Gianni Borghesan, Dominiek Reynaerts, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Emmanuel B. Vander Poorten:
Robotic Endoscope Control Via Autonomous Instrument Tracking. Frontiers Robotics AI 9: 832208 (2022) - [j65]Muhammad Asad, Reuben Dorent, Tom Vercauteren:
FastGeodis: Fast Generalised Geodesic Distance Transform. J. Open Source Softw. 7(79): 4532 (2022) - [j64]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical Image Anal. 75: 102265 (2022) - [j63]Daniel Sobotka, Michael Ebner, Ernst Schwartz, Karl-Heinz Nenning, Athena Taymourtash, Tom Vercauteren, Sébastien Ourselin, Gregor Kasprian, Daniela Prayer, Georg Langs, Roxane Licandro:
Motion correction and volumetric reconstruction for fetal functional magnetic resonance imaging data. NeuroImage 255: 119213 (2022) - [j62]Mengjie Shi, Semyon Bodian, Simeon J. West, Sanjayan Sathasivam, Ross J. Gordon, Paul Collier, Tom Vercauteren, Adrien E. Desjardins, Sacha Noimark, Wenfeng Xia:
Enhanced Photoacoustic Visualisation of Clinical Needles by Combining Interstitial and Extracorporeal Illumination of Elastomeric Nanocomposite Coatings. Sensors 22(17): 6417 (2022) - [j61]Christian Baker, Miguel Xochicale, Fang-Yu Lin, Sunish Mathews, Francois Joubert, Dzhoshkun I. Shakir, Richard Miles, Charles A. Mosse, Tianrui Zhao, Weidong Liang, Yada Kunpalin, Brian Dromey, Talisa Mistry, Neil J. Sebire, Edward Zhang, Sébastien Ourselin, Paul C. Beard, Anna L. David, Adrien E. Desjardins, Tom Vercauteren, Wenfeng Xia:
Intraoperative Needle Tip Tracking with an Integrated Fibre-Optic Ultrasound Sensor. Sensors 22(23): 9035 (2022) - [j60]Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu:
Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. IEEE Trans. Medical Imaging 41(11): 3421-3431 (2022) - [c103]Christopher E. Mower, Theodoros Stouraitis, João Moura, Christian Rauch, Lei Yan, Nazanin Zamani Behabadi, Michael Gienger, Tom Vercauteren, Christos Bergeles, Sethu Vijayakumar:
ROS-PyBullet Interface: A Framework for Reliable Contact Simulation and Human-Robot Interaction. CoRL 2022: 1411-1423 - [c102]Andres Diaz-Pinto, Pritesh Mehta, Sachidanand Alle, Muhammad Asad, Richard Brown, Vishwesh Nath, Alvin Ihsani, Michela Antonelli, Daniel Palkovics, Csaba Pinter, Ron Alkalay, Steve Pieper, Holger R. Roth, Daguang Xu, Prerna Dogra, Tom Vercauteren, Andrew Feng, Abood Quraini, Sébastien Ourselin, M. Jorge Cardoso:
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical Images. DALI@MICCAI 2022: 11-21 - [c101]Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey:
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. MLCN@MICCAI 2022: 73-82 - [c100]Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Petru-Daniel Tudosiu, Mark S. Graham, Tom Vercauteren, M. Jorge Cardoso:
Can Segmentation Models Be Trained with Fully Synthetically Generated Data? SASHIMI@MICCAI 2022: 79-90 - [c99]Charalampos Komninos, Theodoros Pissas, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles:
Intra-operative OCT (iOCT) Super Resolution: A Two-Stage Methodology Leveraging High Quality Pre-operative OCT Scans. OMIA@MICCAI 2022: 105-114 - [c98]Samuel Joutard, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren, Marc Modat:
Driving Points Prediction for Abdominal Probabilistic Registration. MLMI@MICCAI 2022: 288-297 - [c97]Muhammad Asad, Lucas Fidon, Tom Vercauteren:
ECONet: Efficient Convolutional Online Likelihood Network for Scribble-based Interactive Segmentation. MIDL 2022: 35-47 - [c96]Samuel Joutard, Thomas S. Pheiffer, Chloé Audigier, Patrick Wohlfahrt, Reuben Dorent, Sebastien Piat, Tom Vercauteren, Marc Modat, Tommaso Mansi:
A Multi-organ Point Cloud Registration Algorithm for Abdominal CT Registration. WBIR 2022: 75-84 - [i87]Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation. CoRR abs/2201.02831 (2022) - [i86]Muhammad Asad, Lucas Fidon, Tom Vercauteren:
ECONet: Efficient Convolutional Online Likelihood Network for Scribble-based Interactive Segmentation. CoRR abs/2201.04584 (2022) - [i85]Daniel Sobotka, Michael Ebner, Ernst Schwartz, Karl-Heinz Nenning, Athena Taymourtash, Tom Vercauteren, Sébastien Ourselin, Gregor Kasprian, Daniela Prayer, Georg Langs, Roxane Licandro:
Motion Correction and Volumetric Reconstruction for Fetal Functional Magnetic Resonance Imaging Data. CoRR abs/2202.05863 (2022) - [i84]Samuel Joutard, Thomas S. Pheiffer, Chloé Audigier, Patrick Wohlfahrt, Reuben Dorent, Sebastien Piat, Tom Vercauteren, Marc Modat, Tommaso Mansi:
A multi-organ point cloud registration algorithm for abdominal CT registration. CoRR abs/2203.08041 (2022) - [i83]Andres Diaz-Pinto, Sachidanand Alle, Alvin Ihsani, Muhammad Asad, Vishwesh Nath, Fernando Pérez-García, Pritesh Mehta, Wenqi Li, Holger R. Roth, Tom Vercauteren, Daguang Xu, Prerna Dogra, Sébastien Ourselin, Andrew Feng, M. Jorge Cardoso:
MONAI Label: A framework for AI-assisted Interactive Labeling of 3D Medical Images. CoRR abs/2203.12362 (2022) - [i82]Lucas Fidon, Michael Aertsen, Florian Kofler, Andrea Bink, Anna L. David, Thomas Deprest, Doaa Emam, Frédéric Guffens, András Jakab, Gregor Kasprian, Patric Kienast, Andrew Melbourne, Bjoern H. Menze, Nada Mufti, Ivana Pogledic, Daniela Prayer, Marlene Stuempflen, Esther Van Elslander, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
A Dempster-Shafer approach to trustworthy AI with application to fetal brain MRI segmentation. CoRR abs/2204.02779 (2022) - [i81]Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Weibin Liao, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
Fetal Brain Tissue Annotation and Segmentation Challenge Results. CoRR abs/2204.09573 (2022) - [i80]Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
blob loss: instance imbalance aware loss functions for semantic segmentation. CoRR abs/2205.08209 (2022) - [i79]Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. CoRR abs/2205.10355 (2022) - [i78]Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu:
Cross-Modality Image Registration using a Training-Time Privileged Third Modality. CoRR abs/2207.12901 (2022) - [i77]Muhammad Asad, Reuben Dorent, Tom Vercauteren:
FastGeodis: Fast Generalised Geodesic Distance Transform. CoRR abs/2208.00001 (2022) - [i76]Samuel Joutard, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren, Marc Modat:
Driving Points Prediction For Abdominal Probabilistic Registration. CoRR abs/2208.03232 (2022) - [i75]Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey:
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. CoRR abs/2208.04680 (2022) - [i74]Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Petru-Daniel Tudosiu, Mark S. Graham, Tom Vercauteren, M. Jorge Cardoso:
Can segmentation models be trained with fully synthetically generated data? CoRR abs/2209.08256 (2022) - [i73]Christopher E. Mower, Theodoros Stouraitis, João Moura, Christian Rauch, Lei Yan, Nazanin Zamani Behabadi, Michael Gienger, Tom Vercauteren, Christos Bergeles, Sethu Vijayakumar:
ROS-PyBullet Interface: A Framework for Reliable Contact Simulation and Human-Robot Interaction. CoRR abs/2210.06887 (2022) - [i72]Charlie Budd, Luis C. García-Peraza-Herrera, Martin Huber, Sébastien Ourselin, Tom Vercauteren:
Rapid and robust endoscopic content area estimation: A lean GPU-based pipeline and curated benchmark dataset. CoRR abs/2210.14771 (2022) - [i71]M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murray, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans J. Johnson, Brad W. Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin S. Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen R. Aylward, Prerna Dogra, Sébastien Ourselin, Andrew Feng:
MONAI: An open-source framework for deep learning in healthcare. CoRR abs/2211.02701 (2022) - [i70]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames. CoRR abs/2211.04867 (2022) - 2021
- [j59]Jonathan Shapey, Thomas Dowrick, Rémi Delaunay, Eleanor C. Mackle, Stephen A. Thompson, Mirek Janatka, Roland Guichard, Anastasis Georgoulas, David Pérez-Suárez, Robert Bradford, Shakeel R. Saeed, Sébastien Ourselin, Matthew J. Clarkson, Tom Vercauteren:
Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware. Int. J. Comput. Assist. Radiol. Surg. 16(8): 1347-1356 (2021) - [j58]Fernando Pérez-García, Reuben Dorent, Michele Rizzi, Francesco Cardinale, Valerio Frazzini, Vincent Navarro, Caroline Essert, Irène Ollivier, Tom Vercauteren, Rachel Sparks, John S. Duncan, Sébastien Ourselin:
A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections. Int. J. Comput. Assist. Radiol. Surg. 16(10): 1653-1661 (2021) - [j57]Reuben Dorent, Thomas C. Booth, Wenqi Li, Carole H. Sudre, Sina Kafiabadi, Manuel Jorge Cardoso, Sébastien Ourselin, Tom Vercauteren:
Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets. Medical Image Anal. 67: 101862 (2021) - [j56]Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, Alexander Hammers, David Atkinson, Kris Thielemans, Brian F. Hutton, Manuel Jorge Cardoso, Sébastien Ourselin:
Imitation learning for improved 3D PET/MR attenuation correction. Medical Image Anal. 71: 102079 (2021) - [j55]Xiangde Luo, Guotai Wang, Tao Song, Jingyang Zhang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
MIDeepSeg: Minimally interactive segmentation of unseen objects from medical images using deep learning. Medical Image Anal. 72: 102102 (2021) - [j54]Ran Gu, Guotai Wang, Tao Song, Rui Huang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation. IEEE Trans. Medical Imaging 40(2): 699-711 (2021) - [j53]Luis C. García-Peraza-Herrera, Lucas Fidon, Claudia D'Ettorre, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Image Compositing for Segmentation of Surgical Tools Without Manual Annotations. IEEE Trans. Medical Imaging 40(5): 1450-1460 (2021) - [j52]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Zero-Shot Super-Resolution With a Physically-Motivated Downsampling Kernel for Endomicroscopy. IEEE Trans. Medical Imaging 40(7): 1863-1874 (2021) - [c95]Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Loss, Test-Time Augmentation, and Transformers for the BraTS 2021 Challenge. BrainLes@MICCAI (2) 2021: 187-196 - [c94]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. ISBI 2021: 1072-1076 - [c93]Martin Huber, John Bason Mitchell, Ross Henry, Sébastien Ourselin, Tom Vercauteren, Christos Bergeles:
Homography-based Visual Servoing with Remote Center of Motion for Semi-autonomous Robotic Endoscope Manipulation. ISMR 2021: 1-7 - [c92]Charalampos Komninos, Theodoros Pissas, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles:
Intra-operative OCT (iOCT) Image Quality Enhancement: A Super-Resolution Approach Using High Quality iOCT 3D Scans. OMIA@MICCAI 2021: 21-31 - [c91]Helena Williams, Laura Cattani, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Automatic Tomographic Ultrasound Imaging Sequence Extraction of the Anal Sphincter. ASMUS@MICCAI 2021: 35-44 - [c90]Lucas Fidon, Michael Aertsen, Nada Mufti, Thomas Deprest, Doaa Emam, Frédéric Guffens, Ernst Schwartz, Michael Ebner, Daniela Prayer, Gregor Kasprian, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Georg Langs, Tom Vercauteren:
Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI. UNSURE/PIPPI@MICCAI 2021: 263-273 - [c89]Helena Williams, João Pedrosa, Laura Cattani, Susanne Housmans, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Interactive Segmentation via Deep Learning and B-Spline Explicit Active Surfaces. MICCAI (1) 2021: 315-325 - [c88]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation. MICCAI (2) 2021: 615-624 - [c87]Lucas Fidon, Michael Aertsen, Doaa Emam, Nada Mufti, Frédéric Guffens, Thomas Deprest, Philippe Demaerel, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
Label-Set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation. MICCAI (2) 2021: 647-657 - [i69]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. CoRR abs/2101.06425 (2021) - [i68]M. Jorge Cardoso, Marc Modat, Tom Vercauteren, Sébastien Ourselin:
Scale factor point spread function matching: Beyond aliasing in image resampling. CoRR abs/2101.06440 (2021) - [i67]Luis C. García-Peraza-Herrera, Lucas Fidon, Claudia D'Ettorre, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Image Compositing for Segmentation of Surgical Tools without Manual Annotations. CoRR abs/2102.09528 (2021) - [i66]Luis C. García-Peraza-Herrera, Martin Everson, Laurence B. Lovat, Hsiu-Po Wang, Wen-Lun Wang, Rehan J. Haidry, Danail Stoyanov, Sébastien Ourselin, Tom Vercauteren:
Intrapapillary Capillary Loop Classification in Magnification Endoscopy: Open Dataset and Baseline Methodology. CoRR abs/2102.09963 (2021) - [i65]Marta Bianca Maria Ranzini, Lucas Fidon, Sébastien Ourselin, Marc Modat, Tom Vercauteren:
MONAIfbs: MONAI-based fetal brain MRI deep learning segmentation. CoRR abs/2103.13314 (2021) - [i64]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Zero-shot super-resolution with a physically-motivated downsampling kernel for endomicroscopy. CoRR abs/2103.14015 (2021) - [i63]Xiangde Luo, Guotai Wang, Tao Song, Jingyang Zhang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
MIDeepSeg: Minimally Interactive Segmentation of Unseen Objects from Medical Images Using Deep Learning. CoRR abs/2104.12166 (2021) - [i62]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. CoRR abs/2104.14873 (2021) - [i61]Fernando Pérez-García, Reuben Dorent, Michele Rizzi, Francesco Cardinale, Valerio Frazzini, Vincent Navarro, Caroline Essert, Irène Ollivier, Tom Vercauteren, Rachel Sparks, John S. Duncan, Sébastien Ourselin:
A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections. CoRR abs/2105.11239 (2021) - [i60]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for Weakly Supervised Segmentation. CoRR abs/2107.00583 (2021) - [i59]Caspar Gruijthuijsen, Luis C. García-Peraza-Herrera, Gianni Borghesan, Dominiek Reynaerts, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Emmanuel B. Vander Poorten:
Autonomous Robotic Endoscope Control based on Semantically Rich Instructions. CoRR abs/2107.02317 (2021) - [i58]Lucas Fidon, Michael Aertsen, Doaa Emam, Nada Mufti, Frédéric Guffens, Thomas Deprest, Philippe Demaerel, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
Label-set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation. CoRR abs/2107.03846 (2021) - [i57]Lucas Fidon, Michael Aertsen, Nada Mufti, Thomas Deprest, Doaa Emam, Frédéric Guffens, Ernst Schwartz, Michael Ebner, Daniela Prayer, Gregor Kasprian, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Georg Langs, Tom Vercauteren:
Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI. CoRR abs/2108.04175 (2021) - [i56]Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Deep Learning Approach for Hyperspectral Image Demosaicking, Spectral Correction and High-resolution RGB Reconstruction. CoRR abs/2109.01403 (2021) - [i55]Martin Huber, Sébastien Ourselin, Christos Bergeles, Tom Vercauteren:
Deep Homography Estimation in Dynamic Surgical Scenes for Laparoscopic Camera Motion Extraction. CoRR abs/2109.15098 (2021) - [i54]Helena Williams, João Pedrosa, Laura Cattani, Susanne Housmans, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Interactive Segmentation via Deep Learning and B-Spline Explicit Active Surfaces. CoRR abs/2110.12939 (2021) - [i53]Lucas Fidon, Michael Aertsen, Suprosanna Shit, Philippe Demaerel, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
Partial supervision for the FeTA challenge 2021. CoRR abs/2111.02408 (2021) - [i52]Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Loss, Test-time Augmentation, and Transformers for the BraTS 2021 challenge. CoRR abs/2112.13054 (2021) - 2020
- [j51]Luis C. García-Peraza-Herrera, Martin Everson, Laurence B. Lovat, Hsiu-Po Wang, Wen-Lun Wang, Rehan J. Haidry, Danail Stoyanov, Sébastien Ourselin, Tom Vercauteren:
Intrapapillary capillary loop classification in magnification endoscopy: open dataset and baseline methodology. Int. J. Comput. Assist. Radiol. Surg. 15(4): 651-659 (2020) - [j50]Sophia Bano, Francisco Vasconcelos, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Danail Stoyanov:
FetNet: a recurrent convolutional network for occlusion identification in fetoscopic videos. Int. J. Comput. Assist. Radiol. Surg. 15(5): 791-801 (2020) - [j49]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Learning from irregularly sampled data for endomicroscopy super-resolution: a comparative study of sparse and dense approaches. Int. J. Comput. Assist. Radiol. Surg. 15(7): 1167-1175 (2020) - [j48]Hari McGrath, Peichao Li, Reuben Dorent, Robert Bradford, Shakeel R. Saeed, Sotirios Bisdas, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Manual segmentation versus semi-automated segmentation for quantifying vestibular schwannoma volume on MRI. Int. J. Comput. Assist. Radiol. Surg. 15(9): 1445-1455 (2020) - [j47]Mirza Awais Ahmad, Mouloud Ourak, Caspar Gruijthuijsen, Jan Deprest, Tom Vercauteren, Emmanuel B. Vander Poorten:
Deep learning-based monocular placental pose estimation: towards collaborative robotics in fetoscopy. Int. J. Comput. Assist. Radiol. Surg. 15(9): 1561-1571 (2020) - [j46]Sophia Bano, Francisco Vasconcelos, Marcel Tella-Amo, George Dwyer, Caspar Gruijthuijsen, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Danail Stoyanov:
Deep learning-based fetoscopic mosaicking for field-of-view expansion. Int. J. Comput. Assist. Radiol. Surg. 15(11): 1807-1816 (2020) - [j45]Marta Bianca Maria Ranzini, Johann Henckel, Michael Ebner, M. Jorge Cardoso, Amanda Isaac, Tom Vercauteren, Sébastien Ourselin, Alister Hart, Marc Modat:
Automated postoperative muscle assessment of hip arthroplasty patients using multimodal imaging joint segmentation. Comput. Methods Programs Biomed. 183 (2020) - [j44]François Chadebecq, Francisco Vasconcelos, Rene M. Lacher, Efthymios Maneas, Adrien E. Desjardins, Sébastien Ourselin, Tom Vercauteren, Danail Stoyanov:
Refractive Two-View Reconstruction for Underwater 3D Vision. Int. J. Comput. Vis. 128(5): 1101-1117 (2020) - [j43]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5(55): 2705 (2020) - [j42]Antonios Perperidis, Kevin Dhaliwal, Stephen McLaughlin, Tom Vercauteren:
Image computing for fibre-bundle endomicroscopy: A review. Medical Image Anal. 62: 101620 (2020) - [j41]Michael Ebner, Guotai Wang, Wenqi Li, Michael Aertsen, Premal A. Patel, Rosalind Aughwane, Andrew Melbourne, Tom Doel, Steven Dymarkowski, Paolo De Coppi, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
An automated framework for localization, segmentation and super-resolution reconstruction of fetal brain MRI. NeuroImage 206 (2020) - [j40]Tom Vercauteren, Mathias Unberath, Nicolas Padoy, Nassir Navab:
CAI4CAI: The Rise of Contextual Artificial Intelligence in Computer-Assisted Interventions. Proc. IEEE 108(1): 198-214 (2020) - [c86]Julie Legrand, Dries Dirckx, Maarten Durt, Mouloud Ourak, Jan Deprest, Sébastien Ourselin, Jun Qian, Tom Vercauteren, Emmanuel B. Vander Poorten:
Active Handheld Flexible Fetoscope-Design and Control Based on a Modified Generalized Prandtl-Ishlinski Model. AIM 2020: 367-374 - [c85]Lucas Fidon, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for Brain Tumor Segmentation: BraTS 2020 Challenge. BrainLes@MICCAI (2) 2020: 200-214 - [c84]Helena Williams, Laura Cattani, Mohammad Yaqub, Carole H. Sudre, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Automatic C-Plane Detection in Pelvic Floor Transperineal Volumetric Ultrasound. ASMUS/PIPPI@MICCAI 2020: 136-145 - [c83]