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- affiliation: University College London (UCL), UK
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2020 – today
- 2022
[j59]Caspar Gruijthuijsen, Luis C. García-Peraza-Herrera, Gianni Borghesan, Dominiek Reynaerts, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Emmanuel B. Vander Poorten:
Robotic Endoscope Control Via Autonomous Instrument Tracking. Frontiers Robotics AI 9: 832208 (2022)- [j58]Adrià Casamitjana
, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical Image Anal. 75: 102265 (2022) - [i76]Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation. CoRR abs/2201.02831 (2022) - [i75]Muhammad Asad, Lucas Fidon, Tom Vercauteren:
ECONet: Efficient Convolutional Online Likelihood Network for Scribble-based Interactive Segmentation. CoRR abs/2201.04584 (2022) - [i74]Daniel Sobotka, Michael Ebner, Ernst Schwartz, Karl-Heinz Nenning, Athena Taymourtash, Tom Vercauteren, Sébastien Ourselin, Gregor Kasprian, Daniela Prayer, Georg Langs, Roxane Licandro:
Motion Correction and Volumetric Reconstruction for Fetal Functional Magnetic Resonance Imaging Data. CoRR abs/2202.05863 (2022) - [i73]Samuel Joutard, Thomas S. Pheiffer, Chloé Audigier, Patrick Wohlfahrt, Reuben Dorent, Sebastien Piat, Tom Vercauteren, Marc Modat, Tommaso Mansi:
A multi-organ point cloud registration algorithm for abdominal CT registration. CoRR abs/2203.08041 (2022) - [i72]Andres Diaz-Pinto, Sachidanand Alle, Alvin Ihsani, Muhammad Asad, Vishwesh Nath, Fernando Pérez-García, Pritesh Mehta, Wenqi Li, Holger R. Roth, Tom Vercauteren, Daguang Xu, Prerna Dogra, Sébastien Ourselin, Andrew Feng, M. Jorge Cardoso:
MONAI Label: A framework for AI-assisted Interactive Labeling of 3D Medical Images. CoRR abs/2203.12362 (2022) - [i71]Lucas Fidon, Michael Aertsen, Florian Kofler, Andrea Bink, Anna L. David, Thomas Deprest, Doaa Emam, Frédéric Guffens, András Jakab, Gregor Kasprian, Patric Kienast, Andrew Melbourne, Bjoern H. Menze, Nada Mufti, Ivana Pogledic, Daniela Prayer, Marlene Stuempflen, Esther Van Elslander, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
A Dempster-Shafer approach to trustworthy AI with application to fetal brain MRI segmentation. CoRR abs/2204.02779 (2022) - [i70]Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Fadida-Specktor, Leo Joskowicz, Weibin Liao, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
Fetal Brain Tissue Annotation and Segmentation Challenge Results. CoRR abs/2204.09573 (2022) - 2021
- [j57]Jonathan Shapey, Thomas Dowrick, Rémi Delaunay, Eleanor C. Mackle, Stephen A. Thompson, Mirek Janatka, Roland Guichard, Anastasis Georgoulas, David Pérez-Suárez, Robert Bradford, Shakeel R. Saeed, Sébastien Ourselin, Matthew J. Clarkson, Tom Vercauteren:
Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware. Int. J. Comput. Assist. Radiol. Surg. 16(8): 1347-1356 (2021) - [j56]Fernando Pérez-García, Reuben Dorent, Michele Rizzi, Francesco Cardinale, Valerio Frazzini, Vincent Navarro, Caroline Essert, Irène Ollivier, Tom Vercauteren, Rachel Sparks, John S. Duncan, Sébastien Ourselin:
A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections. Int. J. Comput. Assist. Radiol. Surg. 16(10): 1653-1661 (2021) - [j55]Reuben Dorent, Thomas C. Booth, Wenqi Li, Carole H. Sudre, Sina Kafiabadi, Manuel Jorge Cardoso, Sébastien Ourselin, Tom Vercauteren:
Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets. Medical Image Anal. 67: 101862 (2021) - [j54]Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, Alexander Hammers, David Atkinson, Kris Thielemans, Brian F. Hutton, Manuel Jorge Cardoso, Sébastien Ourselin:
Imitation learning for improved 3D PET/MR attenuation correction. Medical Image Anal. 71: 102079 (2021) - [j53]Xiangde Luo, Guotai Wang, Tao Song, Jingyang Zhang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
MIDeepSeg: Minimally interactive segmentation of unseen objects from medical images using deep learning. Medical Image Anal. 72: 102102 (2021) - [j52]Ran Gu, Guotai Wang, Tao Song, Rui Huang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation. IEEE Trans. Medical Imaging 40(2): 699-711 (2021) - [j51]Luis C. García-Peraza-Herrera, Lucas Fidon, Claudia D'Ettorre, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Image Compositing for Segmentation of Surgical Tools Without Manual Annotations. IEEE Trans. Medical Imaging 40(5): 1450-1460 (2021) - [j50]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Zero-Shot Super-Resolution With a Physically-Motivated Downsampling Kernel for Endomicroscopy. IEEE Trans. Medical Imaging 40(7): 1863-1874 (2021) - [c93]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. ISBI 2021: 1072-1076 - [c92]Martin Huber, John Bason Mitchell, Ross Henry, Sébastien Ourselin, Tom Vercauteren, Christos Bergeles:
Homography-based Visual Servoing with Remote Center of Motion for Semi-autonomous Robotic Endoscope Manipulation. ISMR 2021: 1-7 - [c91]Charalampos Komninos, Theodoros Pissas, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles:
Intra-operative OCT (iOCT) Image Quality Enhancement: A Super-Resolution Approach Using High Quality iOCT 3D Scans. OMIA@MICCAI 2021: 21-31 - [c90]Helena Williams, Laura Cattani, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Automatic Tomographic Ultrasound Imaging Sequence Extraction of the Anal Sphincter. ASMUS@MICCAI 2021: 35-44 - [c89]Lucas Fidon, Michael Aertsen, Nada Mufti, Thomas Deprest, Doaa Emam, Frédéric Guffens, Ernst Schwartz, Michael Ebner, Daniela Prayer, Gregor Kasprian, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Georg Langs, Tom Vercauteren:
Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI. UNSURE/PIPPI@MICCAI 2021: 263-273 - [c88]Helena Williams, João Pedrosa, Laura Cattani, Susanne Housmans, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Interactive Segmentation via Deep Learning and B-Spline Explicit Active Surfaces. MICCAI (1) 2021: 315-325 - [c87]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation. MICCAI (2) 2021: 615-624 - [c86]Lucas Fidon, Michael Aertsen, Doaa Emam, Nada Mufti, Frédéric Guffens, Thomas Deprest, Philippe Demaerel, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
Label-Set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation. MICCAI (2) 2021: 647-657 - [i69]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. CoRR abs/2101.06425 (2021) - [i68]M. Jorge Cardoso, Marc Modat, Tom Vercauteren, Sébastien Ourselin:
Scale factor point spread function matching: Beyond aliasing in image resampling. CoRR abs/2101.06440 (2021) - [i67]Luis C. García-Peraza-Herrera, Lucas Fidon, Claudia D'Ettorre, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Image Compositing for Segmentation of Surgical Tools without Manual Annotations. CoRR abs/2102.09528 (2021) - [i66]Luis C. García-Peraza-Herrera, Martin Everson, Laurence B. Lovat, Hsiu-Po Wang, Wen-Lun Wang, Rehan J. Haidry, Danail Stoyanov, Sébastien Ourselin, Tom Vercauteren:
Intrapapillary Capillary Loop Classification in Magnification Endoscopy: Open Dataset and Baseline Methodology. CoRR abs/2102.09963 (2021) - [i65]Marta Bianca Maria Ranzini, Lucas Fidon, Sébastien Ourselin, Marc Modat, Tom Vercauteren:
MONAIfbs: MONAI-based fetal brain MRI deep learning segmentation. CoRR abs/2103.13314 (2021) - [i64]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Zero-shot super-resolution with a physically-motivated downsampling kernel for endomicroscopy. CoRR abs/2103.14015 (2021) - [i63]Xiangde Luo, Guotai Wang, Tao Song, Jingyang Zhang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
MIDeepSeg: Minimally Interactive Segmentation of Unseen Objects from Medical Images Using Deep Learning. CoRR abs/2104.12166 (2021) - [i62]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. CoRR abs/2104.14873 (2021) - [i61]Fernando Pérez-García, Reuben Dorent, Michele Rizzi, Francesco Cardinale, Valerio Frazzini, Vincent Navarro, Caroline Essert, Irène Ollivier, Tom Vercauteren, Rachel Sparks, John S. Duncan, Sébastien Ourselin:
A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections. CoRR abs/2105.11239 (2021) - [i60]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for Weakly Supervised Segmentation. CoRR abs/2107.00583 (2021) - [i59]Caspar Gruijthuijsen, Luis C. García-Peraza-Herrera, Gianni Borghesan, Dominiek Reynaerts, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Emmanuel B. Vander Poorten:
Autonomous Robotic Endoscope Control based on Semantically Rich Instructions. CoRR abs/2107.02317 (2021) - [i58]Lucas Fidon, Michael Aertsen, Doaa Emam, Nada Mufti, Frédéric Guffens, Thomas Deprest, Philippe Demaerel, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
Label-set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation. CoRR abs/2107.03846 (2021) - [i57]Lucas Fidon, Michael Aertsen, Nada Mufti, Thomas Deprest, Doaa Emam, Frédéric Guffens, Ernst Schwartz, Michael Ebner, Daniela Prayer, Gregor Kasprian, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Georg Langs, Tom Vercauteren:
Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI. CoRR abs/2108.04175 (2021) - [i56]Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Deep Learning Approach for Hyperspectral Image Demosaicking, Spectral Correction and High-resolution RGB Reconstruction. CoRR abs/2109.01403 (2021) - [i55]Martin Huber, Sébastien Ourselin, Christos Bergeles, Tom Vercauteren:
Deep Homography Estimation in Dynamic Surgical Scenes for Laparoscopic Camera Motion Extraction. CoRR abs/2109.15098 (2021) - [i54]Helena Williams, João Pedrosa, Laura Cattani, Susanne Housmans, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Interactive Segmentation via Deep Learning and B-Spline Explicit Active Surfaces. CoRR abs/2110.12939 (2021) - [i53]Lucas Fidon, Michael Aertsen, Suprosanna Shit, Philippe Demaerel, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
Partial supervision for the FeTA challenge 2021. CoRR abs/2111.02408 (2021) - [i52]Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Loss, Test-time Augmentation, and Transformers for the BraTS 2021 challenge. CoRR abs/2112.13054 (2021) - 2020
- [j49]Luis C. García-Peraza-Herrera, Martin Everson, Laurence B. Lovat, Hsiu-Po Wang, Wen-Lun Wang, Rehan J. Haidry, Danail Stoyanov, Sébastien Ourselin, Tom Vercauteren:
Intrapapillary capillary loop classification in magnification endoscopy: open dataset and baseline methodology. Int. J. Comput. Assist. Radiol. Surg. 15(4): 651-659 (2020) - [j48]Sophia Bano, Francisco Vasconcelos, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Danail Stoyanov:
FetNet: a recurrent convolutional network for occlusion identification in fetoscopic videos. Int. J. Comput. Assist. Radiol. Surg. 15(5): 791-801 (2020) - [j47]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Learning from irregularly sampled data for endomicroscopy super-resolution: a comparative study of sparse and dense approaches. Int. J. Comput. Assist. Radiol. Surg. 15(7): 1167-1175 (2020) - [j46]Hari McGrath, Peichao Li, Reuben Dorent, Robert Bradford, Shakeel R. Saeed, Sotirios Bisdas, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Manual segmentation versus semi-automated segmentation for quantifying vestibular schwannoma volume on MRI. Int. J. Comput. Assist. Radiol. Surg. 15(9): 1445-1455 (2020) - [j45]Mirza Awais Ahmad, Mouloud Ourak, Caspar Gruijthuijsen, Jan Deprest, Tom Vercauteren, Emmanuel B. Vander Poorten:
Deep learning-based monocular placental pose estimation: towards collaborative robotics in fetoscopy. Int. J. Comput. Assist. Radiol. Surg. 15(9): 1561-1571 (2020) - [j44]Sophia Bano, Francisco Vasconcelos, Marcel Tella-Amo, George Dwyer, Caspar Gruijthuijsen, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Danail Stoyanov:
Deep learning-based fetoscopic mosaicking for field-of-view expansion. Int. J. Comput. Assist. Radiol. Surg. 15(11): 1807-1816 (2020) - [j43]Marta Bianca Maria Ranzini, Johann Henckel, Michael Ebner, M. Jorge Cardoso, Amanda Isaac, Tom Vercauteren, Sébastien Ourselin, Alister Hart, Marc Modat:
Automated postoperative muscle assessment of hip arthroplasty patients using multimodal imaging joint segmentation. Comput. Methods Programs Biomed. 183 (2020) - [j42]François Chadebecq, Francisco Vasconcelos, Rene M. Lacher, Efthymios Maneas, Adrien E. Desjardins, Sébastien Ourselin, Tom Vercauteren, Danail Stoyanov:
Refractive Two-View Reconstruction for Underwater 3D Vision. Int. J. Comput. Vis. 128(5): 1101-1117 (2020) - [d2]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5(55): 2705 (2020) - [j41]Antonios Perperidis, Kevin Dhaliwal, Stephen McLaughlin, Tom Vercauteren:
Image computing for fibre-bundle endomicroscopy: A review. Medical Image Anal. 62: 101620 (2020) - [j40]Michael Ebner, Guotai Wang, Wenqi Li, Michael Aertsen, Premal A. Patel, Rosalind Aughwane, Andrew Melbourne, Tom Doel, Steven Dymarkowski, Paolo De Coppi, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
An automated framework for localization, segmentation and super-resolution reconstruction of fetal brain MRI. NeuroImage 206 (2020) - [j39]Tom Vercauteren, Mathias Unberath, Nicolas Padoy, Nassir Navab:
CAI4CAI: The Rise of Contextual Artificial Intelligence in Computer-Assisted Interventions. Proc. IEEE 108(1): 198-214 (2020) - [c85]Julie Legrand, Dries Dirckx, Maarten Durt, Mouloud Ourak, Jan Deprest, Sébastien Ourselin, Jun Qian, Tom Vercauteren, Emmanuel B. Vander Poorten:
Active Handheld Flexible Fetoscope-Design and Control Based on a Modified Generalized Prandtl-Ishlinski Model. AIM 2020: 367-374 - [c84]Lucas Fidon, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for Brain Tumor Segmentation: BraTS 2020 Challenge. BrainLes@MICCAI (2) 2020: 200-214 - [c83]Helena Williams, Laura Cattani, Mohammad Yaqub, Carole H. Sudre, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Automatic C-Plane Detection in Pelvic Floor Transperineal Volumetric Ultrasound. ASMUS/PIPPI@MICCAI 2020: 136-145 - [c82]Hassna Irzan, Lucas Fidon, Tom Vercauteren, Sébastien Ourselin, Neil Marlow, Andrew Melbourne:
Min-Cut Max-Flow for Network Abnormality Detection: Application to Preterm Birth. UNSURE/GRAIL@MICCAI 2020: 164-173 - [c81]Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean C. Barratt, Yipeng Hu:
Longitudinal Image Registration with Temporal-Order and Subject-Specificity Discrimination. MICCAI (3) 2020: 243-252 - [c80]Guotai Wang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
Uncertainty-Guided Efficient Interactive Refinement of Fetal Brain Segmentation from Stacks of MRI Slices. MICCAI (4) 2020: 279-288 - [c79]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel R. Saeed, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Scribble-Based Domain Adaptation via Co-segmentation. MICCAI (1) 2020: 479-489 - [c78]Rémi Delaunay, Yipeng Hu, Tom Vercauteren:
An Unsupervised Approach to Ultrasound Elastography with End-to-end Strain Regularisation. MICCAI (3) 2020: 573-582 - [c77]Sophia Bano, Francisco Vasconcelos, Luke M. Shepherd, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Anna L. David, Jan Deprest, Danail Stoyanov:
Deep Placental Vessel Segmentation for Fetoscopic Mosaicking. MICCAI (3) 2020: 763-773 - [c76]David Drobny, Marta Ranzini, Amanda Isaac, Tom Vercauteren, Sébastien Ourselin, David Choi, Marc Modat:
Towards Automated Spine Mobility Quantification: A Locally Rigid CT to X-ray Registration Framework. WBIR 2020: 67-77 - [i51]Lucas Fidon, Sébastien Ourselin, Tom Vercauteren:
SGD with Hardness Weighted Sampling for Distributionally Robust Deep Learning. CoRR abs/2001.02658 (2020) - [i50]Guotai Wang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
Uncertainty-Guided Efficient Interactive Refinement of Fetal Brain Segmentation from Stacks of MRI Slices. CoRR abs/2007.00833 (2020) - [i49]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel R. Saeed, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Scribble-based Domain Adaptation via Co-segmentation. CoRR abs/2007.03632 (2020) - [i48]Sophia Bano, Francisco Vasconcelos, Luke M. Shepherd, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Anna L. David, Jan Deprest, Danail Stoyanov:
Deep Placental Vessel Segmentation for Fetoscopic Mosaicking. CoRR abs/2007.04349 (2020) - [i47]Sofie Tilborghs, Ine Dirks, Lucas Fidon, Siri Willems, Tom Eelbode, Jeroen Bertels, Bart Ilsen, Arne Brys, Adriana Dubbeldam, Nico Buls, Panagiotis Gonidakis, Sebastián Amador Sánchez, Annemiek Snoeckx, Paul M. Parizel, Johan de Mey, Dirk Vandermeulen, Tom Vercauteren, David Robben, Dirk Smeets, Frederik Maes, Jef Vandemeulebroucke, Paul Suetens:
Comparative study of deep learning methods for the automatic segmentation of lung, lesion and lesion type in CT scans of COVID-19 patients. CoRR abs/2007.15546 (2020) - [i46]Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean C. Barratt, Yipeng Hu:
Longitudinal Image Registration with Temporal-order and Subject-specificity Discrimination. CoRR abs/2008.13002 (2020) - [i45]Nina Montaña Brown, Yunguan Fu, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alex Grimwood, Zhe Min, Ester Bonmati, Tom Vercauteren, Matthew J. Clarkson, Yipeng Hu:
Introduction to Medical Image Registration with DeepReg, Between Old and New. CoRR abs/2009.01924 (2020) - [i44]Luis C. García-Peraza-Herrera, Wenqi Li, Caspar Gruijthuijsen, Alain Devreker, George Attilakos, Jan Deprest, Emmanuel B. Vander Poorten, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Real-Time Segmentation of Non-Rigid Surgical Tools based on Deep Learning and Tracking. CoRR abs/2009.03016 (2020) - [i43]Reuben Dorent, Thomas C. Booth, Wenqi Li, Carole H. Sudre, Sina Kafiabadi, Manuel Jorge Cardoso, Sébastien Ourselin, Tom Vercauteren:
Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets. CoRR abs/2009.04009 (2020) - [i42]Ran Gu, Guotai Wang, Tao Song, Rui Huang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation. CoRR abs/2009.10549 (2020) - [i41]Conor C. Horgan, Magnus Jensen, Anika Nagelkerke, Jean-Phillipe St-Pierre, Tom Vercauteren, Molly M. Stevens, Mads S. Bergholt:
High-throughput molecular imaging via deep learning enabled Raman spectroscopy. CoRR abs/2009.13318 (2020) - [i40]Lucas Fidon, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for brain tumor segmentation: BraTS 2020 challenge. CoRR abs/2011.01614 (2020) - [i39]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. CoRR abs/2011.02580 (2020) - [i38]Abel Díaz Berenguer, Hichem Sahli, Boris Joukovsky, Maryna Kvasnytsia, Ine Dirks, Mitchel Alioscha-Pérez, Nikos Deligiannis, Panagiotis Gonidakis, Sebastián Amador Sánchez, Redona Brahimetaj, Evgenia Papavasileiou, Jonathan Cheung-Wai Chan, Fei Li, Shangzhen Song, Yixin Yang, Sofie Tilborghs, Siri Willems, Tom Eelbode, Jeroen Bertels, Dirk Vandermeulen, Frederik Maes, Paul Suetens, Lucas Fidon, Tom Vercauteren, David Robben, Arne Brys, Dirk Smeets, Bart Ilsen, Nico Buls, Nina Watté, Johan de Mey, Annemiek Snoeckx, Paul M. Parizel, Julien Guiot, Louis Deprez, Paul Meunier, Stefaan Gryspeerdt, Kristof De Smet, Bart Jansen, Jef Vandemeulebroucke:
Explainable-by-design Semi-Supervised Representation Learning for COVID-19 Diagnosis from CT Imaging. CoRR abs/2011.11719 (2020) - [i37]Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, Jan Deprest, Sébastien Ourselin, Juan Eugenio Iglesias, Tom Vercauteren:
Active Annotation of Informative Overlapping Frames in Video Mosaicking Applications. CoRR abs/2012.15343 (2020)
2010 – 2019
- 2019
- [j38]Guotai Wang, Wenqi Li, Sébastien Ourselin, Tom Vercauteren:
Automatic Brain Tumor Segmentation Based on Cascaded Convolutional Neural Networks With Uncertainty Estimation. Frontiers Comput. Neurosci. 13: 56 (2019) - [j37]Julie Legrand, Allan Javaux, Mouloud Ourak, Dirk Wenmakers, Tom Vercauteren, Jan Deprest, Sébastien Ourselin, Kathleen Denis, Emmanuel B. Vander Poorten:
Handheld Active Add-On Control Unit for a Cable-Driven Flexible Endoscope. Frontiers Robotics AI 6: 87 (2019) - [j36]Guotai Wang, Wenqi Li, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks. Neurocomputing 338: 34-45 (2019) - [j35]Daniele Ravì, Agnieszka Barbara Szczotka, Stephen P. Pereira, Tom Vercauteren:
Adversarial training with cycle consistency for unsupervised super-resolution in endomicroscopy. Medical Image Anal. 53: 123-131 (2019) - [j34]Guotai Wang, Maria A. Zuluaga, Wenqi Li, Rosalind Pratt, Premal A. Patel, Michael Aertsen, Tom Doel, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 41(7): 1559-1572 (2019) - [j33]Sergio Portolés Diez, Gianni Borghesan, Luc Joyeux, Christel Meuleman, Jan Deprest, Danail Stoyanov, Sébastien Ourselin, Tom Vercauteren, Dominiek Reynaerts, Emmanuel B. Vander Poorten:
Evaluation of Haptic Feedback on Bimanually Teleoperated Laparoscopy for Endometriosis Surgery. IEEE Trans. Biomed. Eng. 66(5): 1207-1221 (2019) - [c75]Mirza Awais Ahmad, Mouloud Ourak, Caspar Gruijthuijsen, Julie Legrand, Tom Vercauteren, Jan Deprest, Sébastien Ourselin, Emmanuel B. Vander Poorten:
Design and Shared Control of a Flexible Endoscope with Autonomous Distal Tip Alignment. ICAR 2019: 647-653 - [c74]George Dwyer, Richard J. Colchester, Erwin J. Alles, Efthymios Maneas, Sébastien Ourselin, Tom Vercauteren, Jan Deprest, Emmanuel B. Vander Poorten, Paolo De Coppi, Adrien E. Desjardins, Danail Stoyanov:
Robotic Control of a Multi-Modal Rigid Endoscope Combining Optical Imaging with All-Optical Ultrasound. ICRA 2019: 3882-3888 - [c73]T. Vandebroek, Mouloud Ourak, Caspar Gruijthuijsen, Allan Javaux, Julie Legrand, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Emmanuel B. Vander Poorten:
Macro-Micro Multi-Arm Robot for Single-Port Access Surgery. IROS 2019: 425-432 - [c72]Premal A. Patel, Dimitra Flouri, Adam Rennie, Fergus Robertson, Lauren Davies, Vijeya Ganesan, Sanjay Bhate, Paolo De Coppi, Tom Vercauteren, Andrew Melbourne:
Quantifying the Intra-Operative Hemodynamic Effects of Glue Embolization in Vein of Galen Malformations. ISBI 2019: 754-758 - [c71]Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, David Atkinson, Kris Thielemans, Brian F. Hutton, M. Jorge Cardoso, Sébastien Ourselin:
Improved MR to CT Synthesis for PET/MR Attenuation Correction Using Imitation Learning. SASHIMI@MICCAI 2019: 13-21 - [c70]Reuben Dorent, Samuel Joutard, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Hetero-Modal Variational Encoder-Decoder for Joint Modality Completion and Segmentation. MICCAI (2) 2019: 74-82 - [c69]Daniel Sobotka, Roxane Licandro, Michael Ebner, Ernst Schwartz, Tom Vercauteren, Sébastien Ourselin, Gregor Kasprian, Daniela Prayer, Georg Langs:
Reproducibility of Functional Connectivity Estimates in Motion Corrected Fetal fMRI. SUSI/PIPPI@MICCAI 2019: 123-132 - [c68]David Drobny, Marta Ranzini, Sébastien Ourselin, Tom Vercauteren, Marc Modat:
Landmark-Based Evaluation of a Block-Matching Registration Framework on the RESECT Pre- and Intra-operative Brain Image Data Set. LABELS/HAL-MICCAI/CuRIOUS@MICCAI 2019: 136-144 - [c67]Guotai Wang, Jonathan Shapey, Wenqi Li, Reuben Dorent, Alex Demitriadis, Sotirios Bisdas, Ian Paddick, Robert Bradford, Shaoting Zhang, Sébastien Ourselin, Tom Vercauteren:
Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. MICCAI (2) 2019: 264-272 - [c66]Sophia Bano, Francisco Vasconcelos, Marcel Tella-Amo, George Dwyer, Caspar Gruijthuijsen, Jan Deprest, Sébastien Ourselin, Emmanuel B. Vander Poorten, Tom Vercauteren, Danail Stoyanov:
Deep Sequential Mosaicking of Fetoscopic Videos. MICCAI (1) 2019: 311-319 - [c65]Samuel Joutard, Reuben Dorent, Amanda Isaac, Sébastien Ourselin, Tom Vercauteren, Marc Modat:
Permutohedral Attention Module for Efficient Non-local Neural Networks. MICCAI (6) 2019: 393-401 - [c64]Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren:
Conditional Segmentation in Lieu of Image Registration. MICCAI (2) 2019: 401-409 - [c63]Lucas Fidon,