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2020 – today
- 2025
[j5]Rosanna Turrisi
, Sarthak Pati, Giovanni Pioggia, Gennaro Tartarisco:
Adapting to evolving MRI data: A transfer learning approach for Alzheimer's disease prediction. NeuroImage 307: 121016 (2025)- 2024
- [j4]Sarthak Pati, Sourav Kumar, Amokh Varma, Brandon Edwards, Charles Lu, Liangqiong Qu, Justin J. Wang, Anantharaman Lakshminarayanan, Shih-han Wang, Micah J. Sheller, Ken Chang, Praveer Singh, Daniel L. Rubin, Jayashree Kalpathy-Cramer, Spyridon Bakas:
Privacy preservation for federated learning in health care. Patterns 5(7): 100974 (2024) - [c13]Ujjwal Baid, Sarthak Pati, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Shahira Abousamra, Siddhesh P. Thakur, Joel H. Saltz, Spyridon Bakas:
Pan-Cancer Tumor Infiltrating Lymphocyte Detection based on Federated Learning. IEEE Big Data 2024: 7640-7647 - [c12]Ibrahim Ethem Hamamci, Sezgin Er, Anjany Sekuboyina, Enis Simsar, Alperen Tezcan, Ayse Gulnihan Simsek, Sevval Nil Esirgun, Furkan Almas, Irem Dogan, Muhammed Furkan Dasdelen, Chinmay Prabhakar, Hadrien Reynaud, Sarthak Pati, Christian Bluethgen, Mehmet Kemal Özdemir, Bjoern H. Menze:
GenerateCT: Text-Conditional Generation of 3D Chest CT Volumes. ECCV (79) 2024: 126-143 - [d7]Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Rémi Gau, Dimitri Papadopoulos Orfanos, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Alp Erkent, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Basile Pinsard, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ali R. Khan, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu, Will Asciutto, Pierre Nedelec:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2024
- [d6]Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Rémi Gau, Dimitri Papadopoulos Orfanos, Oscar Esteban, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Alp Erkent, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Ali R. Khan, Basile Pinsard, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu, Will Asciutto, Pierre Nedelec:
PyBIDS: Python tools for BIDS datasets. Zenodo, 2024 - [i17]Spyridon Bakas, Siddhesh P. Thakur, Shahriar Faghani, Mana Moassefi, Ujjwal Baid, Verena Chung, Sarthak Pati, Shubham Innani, Bhakti Baheti, Jake Albrecht, Alexandros Karargyris, Hasan Kassem, MacLean P. Nasrallah, Jared T. Ahrendsen, Valeria Barresi, Maria A. Gubbiotti, Giselle Y. López, Calixto-Hope G. Lucas, Michael L. Miller, Lee A. D. Cooper, Jason T. Huse, William R. Bell:
BraTS-Path Challenge: Assessing Heterogeneous Histopathologic Brain Tumor Sub-regions. CoRR abs/2405.10871 (2024) - [i16]Dominic LaBella, Katherine Schumacher, Michael Mix, Kevin Leu, Shan McBurney-Lin, Pierre Nedelec, Javier E. Villanueva-Meyer, Jonathan Shapey, Tom Vercauteren, Kazumi Chia, Omar Al-Salihi, Justin Leu, Lia Halasz, Yury Velichko, Chunhao Wang, John Kirkpatrick, Scott Floyd, Zachary J. Reitman, Trey Mullikin, Ulas Bagci, Sean Sachdev, Jona A. Hattangadi-Gluth, Tyler M. Seibert, Nikdokht Farid, Connor Puett, Matthew W. Pease, Kevin Shiue, Syed Muhammad Anwar, Shahriar Faghani, Muhammad Ammar Haider, Pranav I. Warman, Jake Albrecht, András Jakab, Mana Moassefi, Verena Chung, Alejandro Aristizabal, Alexandros Karargyris, Hasan Kassem, Sarthak Pati, Micah J. Sheller, Christina Huang, Aaron Coley, Siddharth Ghanta, Alex Schneider, Conrad Sharp, Rachit Saluja, Florian Kofler, Philipp Lohmann, Philipp Vollmuth, Louis Gagnon, Maruf Adewole, Hongwei Bran Li, Anahita Fathi Kazerooni, Nourel Hoda Tahon, Udunna Anazodo, Ahmed W. Moawad, Bjoern H. Menze, Marius George Linguraru, Mariam Aboian, Benedikt Wiestler, Ujjwal Baid, Gian Marco Conte, Andreas M. Rauschecker, Ayman Nada, Aly H. Abayazeed, Raymond Y. Huang, Maria Correia de Verdier, Jeffrey D. Rudie, Spyridon Bakas, Evan Calabrese:
Brain Tumor Segmentation (BraTS) Challenge 2024: Meningioma Radiotherapy Planning Automated Segmentation. CoRR abs/2405.18383 (2024) - [i15]Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu, Debanjan Haldar, Zhifan Jiang, Anna Zapaishchykova, Julija Pavaine, Lubdha M. Shah, Blaise V. Jones, Nakul Sheth, Sanjay P. Prabhu, Aaron S. McAllister, Wenxin Tu, Khanak K. Nandolia, Andres Felipe Rodriguez, Ibraheem Salman Shaikh, Mariana Sanchez-Montano, Hollie Anne Lai, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Hannah Anderson, Syed Muhammed Anwar, Alejandro Aristizabal, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Austin J. Borja, Evan Calabrese, Verena Chung, Gian Marco Conte, James A. Eddy, Ivan Ezhov, Ariana M. Familiar, Keyvan Farahani, Deep Gandhi, Anurag Gottipati, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Elaine, Alexandros Karargyris, Hasan Kassem, Neda Khalili, Florian Kofler, Dominic LaBella, Koen Van Leemput, Hongwei Li, Nazanin Maleki, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Sarthak Pati, Marie Piraud, Tina Poussaint, Zachary J. Reitman, Jeffrey D. Rudie, Rachit Saluja, Micah J. Sheller, Russell Takeshi Shinohara, Karthik Viswanathan, Chunhao Wang, Benedikt Wiestler, Walter F. Wiggins, Christos Davatzikos, Phillip B. Storm, Miriam Bornhorst, Roger J. Packer, Trent Hummel, Peter de Blank, Lindsey Hoffman, Mariam Aboian, Ali Nabavizadeh, Jeffrey B. Ware, Benjamin H. Kann, Brian Rood, Adam C. Resnick, Spyridon Bakas, Arastoo Vossough, Marius George Linguraru:
BraTS-PEDs: Results of the Multi-Consortium International Pediatric Brain Tumor Segmentation Challenge 2023. CoRR abs/2407.08855 (2024) - [i14]Sarthak Pati, Szymon Mazurek, Spyridon Bakas:
GaNDLF-Synth: A Framework to Democratize Generative AI for (Bio)Medical Imaging. CoRR abs/2410.00173 (2024) - 2023
- [j3]Alexandros Karargyris, Renato Umeton, Micah J. Sheller, Alejandro Aristizabal, Johnu George, Anna Wuest, Sarthak Pati, Hasan Kassem, Maximilian Zenk, Ujjwal Baid, Prakash Narayana Moorthy, Alexander Chowdhury, Junyi Guo, Sahil S. Nalawade, Jacob Rosenthal, David Kanter, Maria Xenochristou, Daniel J. Beutel, Verena Chung, Timothy Bergquist, James A. Eddy, Abubakar Abid, Lewis Tunstall, Omar Sanseviero, Dimitrios Dimitriadis, Yiming Qian, Xinxing Xu, Yong Liu, Rick Siow Mong Goh, Srini Bala, Victor Bittorf, Sreekar Reddy Puchala, Biagio Ricciuti, Soujanya Samineni, Eshna Sengupta, Akshay Chaudhari, Cody Coleman, Bala Desinghu, Gregory F. Diamos, Debo Dutta, Diane Feddema, Grigori Fursin, Xinyuan Huang, Satyananda Kashyap, Nicholas D. Lane, Indranil Mallick, Pietro Mascagni, Virendra Mehta, Cassiano Ferro Moraes, Vivek Natarajan, Nikola Nikolov, Nicolas Padoy, Gennady Pekhimenko, Vijay Janapa Reddi, G. Anthony Reina, Pablo Ribalta, Abhishek Singh, Jayaraman J. Thiagarajan, Jacob Albrecht, Thomas Wolf, Geralyn Miller, Huazhu Fu, Prashant Shah, Daguang Xu, Poonam Yadav, David Talby, Mark M. Awad, Jeremy P. Howard, Michael Rosenthal, Luigi Marchionni, Massimo Loda, Jason M. Johnson, Spyridon Bakas, Peter Mattson:
Federated benchmarking of medical artificial intelligence with MedPerf. Nat. Mac. Intell. 5(7): 799-810 (2023) - [c11]Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, A. Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patino, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin M. H. van Wijnen, Martin Wagner, D. Wei, Amine Yamlahi, Moi Hoon Yap, C. Yuan, Maximilian Zenk, A. Zia, David Zimmerer, Dogu Baran Aydogan, Binod Bhattarai, Louise Bloch, Raphael Brüngel, J. Cho, C. Choi, Q. Dou, Ivan Ezhov, Christoph M. Friedrich, C. Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García-Faura, Maria Grammatikopoulou, S. Hong, Mostafa Jahanifar, I. Jang, Abdolrahim Kadkhodamohammadi, I. Kang, Florian Kofler, S. Kondo, Hugo Jaco Kuijf, M. Li, M. Luu, Tomaz Martincic, Pedro Morais, Mohamed A. Naser, Bruno Oliveira, David Owen, S. Pang, J. Park, S. Park, Szymon Plotka, Élodie Puybareau, Nasir M. Rajpoot, K. Ryu, Numan Saeed, Adam Shephard, Pengcheng Shi, Dejan Stepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Hélène Urien, João L. Vilaça, Kareem A. Wahid, H. Wang, J. Wang, L. Wang, X. Wang, Benedikt Wiestler, Marek Wodzinski, F. Xia, J. Xie, Z. Xiong, Sen Yang, Y. Yang, Zixuan Zhao, Klaus H. Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein:
Why is the Winner the Best? CVPR 2023: 19955-19966 - [d5]Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Rémi Gau, Dimitri Papadopoulos Orfanos, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.16.0. Zenodo, 2023 [all versions] - [d4]Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Oscar Esteban, Quinten McNamara, Krista DeStasio, Rémi Gau, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Dimitri Papadopoulos Orfanos, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.15.6. Zenodo, 2023 [all versions] - [d3]Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Dimitri Papadopoulos Orfanos, Oscar Esteban, Rémi Gau, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.16.1. Zenodo, 2023 [all versions] - [d2]Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Dimitri Papadopoulos Orfanos, Oscar Esteban, Rémi Gau, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.16.2. Zenodo, 2023 [all versions] - [d1]Tal Yarkoni, Christopher J. Markiewicz, Alejandro de la Vega, Krzysztof J. Gorgolewski, Taylor Salo, Yaroslav O. Halchenko, Dimitri Papadopoulos Orfanos, Oscar Esteban, Rémi Gau, Quinten McNamara, Krista DeStasio, Jean-Baptiste Poline, Hans J. Johnson, Evgenii Kalenkovich, Dmitry Petrov, Dylan M. Nielson, James D. Kent, Stefan Appelhoff, Peter Van Dyken, Mathias Goncalves, Shashank Bansal, Valérie Hayot-Sasson, Johan D. Carlin, Gregory Kiar, Kirstie J. Whitaker, Satrajit S. Ghosh, Adina S. Wagner, Elizabeth DuPre, Andrew Janke, Alexander Ivanov, Ashley Gillman, Johannes Wennberg, Lee S. Tirrell, Steven Tilley, Adam Li, Jon Haitz Legarreta, Lea Waller, Mainak Jas, Michael Hanke, Nick Guenther, Russell Poldrack, Ariel Rokem, Chadwick B. Boulay, Jeanette Mumford, Alexis Thual, Chris Holdgraf, Isla Staden, Jason A. Staph, William Drew, Ankur Sinha, Antonin Rovai, Azeez Adebimpe, Bertrand Thirion, Dave F. Kleinschmidt, Erin W. Dickie, Gal Ben-Zvi, John A. Lee, John Kruper, Matteo Visconti di Oleggio Castello, Michael Philipp Notter, Pauline Roca, Ross Blair, Sarthak Pati, Suganya Sundaravadivelu:
PyBIDS: Python tools for BIDS datasets. Version 0.16.3. Zenodo, 2023 [all versions] - [i13]Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, Ali Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, et al.:
Why is the winner the best? CoRR abs/2303.17719 (2023) - [i12]Ibrahim Ethem Hamamci, Sezgin Er, Enis Simsar, Alperen Tezcan, Ayse Gulnihan Simsek, Furkan Almas, Sevval Nil Esirgun, Hadrien Reynaud, Sarthak Pati, Christian Bluethgen, Bjoern H. Menze:
GenerateCT: Text-Guided 3D Chest CT Generation. CoRR abs/2305.16037 (2023) - [i11]Ibrahim Ethem Hamamci, Sezgin Er, Enis Simsar, Atif Emre Yüksel, Sadullah Gultekin, Serife Damla Ozdemir, Kaiyuan Yang, Hongwei Bran Li, Sarthak Pati, Bernd Stadlinger, Albert Mehl, Mustafa Gundogar, Bjoern H. Menze:
DENTEX: An Abnormal Tooth Detection with Dental Enumeration and Diagnosis Benchmark for Panoramic X-rays. CoRR abs/2305.19112 (2023) - [i10]Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright:
Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful? CoRR abs/2306.03255 (2023) - [i9]Florian Kofler, Hendrik Kristian Möller, Josef A. Buchner, Ezequiel de la Rosa, Ivan Ezhov, Marcel Rosier, Isra Mekki, Suprosanna Shit, Moritz Negwer, Rami Al-Maskari, Ali Ertürk, Shankeeth Vinayahalingam, Fabian Isensee, Sarthak Pati, Daniel Rueckert, Jan S. Kirschke, Stefan K. Ehrlich, Annika Reinke, Bjoern H. Menze, Benedikt Wiestler, Marie Piraud:
Panoptica - instance-wise evaluation of 3D semantic and instance segmentation maps. CoRR abs/2312.02608 (2023) - 2022
- [c10]Bhakti Baheti, Sarthak Pati, Bjoern H. Menze, Spyridon Bakas:
Leveraging 2D Deep Learning ImageNet-trained Models for Native 3D Medical Image Analysis. BrainLes@MICCAI 2022: 68-79 - [i8]Ujjwal Baid, Sarthak Pati, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Shahira Abousamra, Siddhesh P. Thakur, Joel H. Saltz, Spyridon Bakas:
Federated Learning for the Classification of Tumor Infiltrating Lymphocytes. CoRR abs/2203.16622 (2022) - [i7]Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah J. Sheller, Hans Shih-Han Wang, G. Anthony Reina, Patrick Foley, Alexey Gruzdev, Deepthi Karkada, Christos Davatzikos, Chiharu Sako, Satyam Ghodasara, Michel Bilello, Suyash Mohan, Philipp Vollmuth, Gianluca Brugnara, Chandrakanth J. Preetha, Felix Sahm, Klaus H. Maier-Hein, Maximilian Zenk, Martin Bendszus, Wolfgang Wick, Evan Calabrese, Jeffrey D. Rudie, Javier E. Villanueva-Meyer, Soonmee Cha, Madhura Ingalhalikar, Manali Jadhav, Umang Pandey, Jitender Saini, John Garrett, Matthew Larson, Robert Jeraj, Stuart Currie, Russell Frood, Kavi Fatania, Raymond Y. Huang, Ken Chang, Carmen Balaña Quintero, Jaume Capellades, Josep Puig, Johannes Trenkler, Josef Pichler, Georg Necker, Andreas Haunschmidt, Stephan Meckel, Gaurav Shukla, Spencer Liem, Gregory S. Alexander, et al.:
Federated Learning Enables Big Data for Rare Cancer Boundary Detection. CoRR abs/2204.10836 (2022) - [i6]Keshava Katti, Ramya Muthukrishnan, Angelina Heyler, Sarthak Pati, Aprupa Alahari, Michael Sanborn, Emily F. Conant, Christopher G. Scott, Stacey J. Winham, Celine M. Vachon, Pratik Chaudhari, Despina Kontos, Spyridon Bakas:
MammoDL: Mammographic Breast Density Estimation using Federated Learning. CoRR abs/2206.05575 (2022) - 2021
- [c9]Siddhesh P. Thakur, Sarthak Pati, Ravi Panchumarthy, Deepthi Karkada, Junwen Wu, Dmitry Kurtaev, Chiharu Sako, Prashant Shah, Spyridon Bakas:
Optimization of Deep Learning Based Brain Extraction in MRI for Low Resource Environments. BrainLes@MICCAI (1) 2021: 151-167 - [c8]Orhun Güley, Sarthak Pati, Spyridon Bakas:
Classification of Infection and Ischemia in Diabetic Foot Ulcers Using VGG Architectures. DFUC@MICCAI 2021: 76-89 - [i5]Sarthak Pati, Siddhesh P. Thakur, Megh Bhalerao, Ujjwal Baid, Caleb M. Grenko, Brandon Edwards, Micah J. Sheller, Jose Agraz, Bhakti Baheti, Vishnu Bashyam, Parth Sharma, Babak Haghighi, Aimilia Gastounioti, Mark Bergman, Bjoern H. Menze, Despina Kontos, Christos Davatzikos, Spyridon Bakas:
GaNDLF: A Generally Nuanced Deep Learning Framework for Scalable End-to-End Clinical Workflows in Medical Imaging. CoRR abs/2103.01006 (2021) - [i4]Sarthak Pati, Ujjwal Baid, Maximilian Zenk, Brandon Edwards, Micah J. Sheller, G. Anthony Reina, Patrick Foley, Alexey Gruzdev, Jason Martin, Shadi Albarqouni, Yong Chen, Russell Taki Shinohara, Annika Reinke, David Zimmerer, John B. Freymann, Justin S. Kirby, Christos Davatzikos, Rivka R. Colen, Aikaterini Kotrotsou, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Hassan M. Fathallah-Shaykh, Roland Wiest, András Jakab, Marc-André Weber, Abhishek Mahajan, Lena Maier-Hein, Jens Kleesiek, Bjoern H. Menze, Klaus H. Maier-Hein, Spyridon Bakas:
The Federated Tumor Segmentation (FeTS) Challenge. CoRR abs/2105.05874 (2021) - [i3]G. Anthony Reina, Alexey Gruzdev, Patrick Foley, Olga Perepelkina, Mansi Sharma, Igor Davidyuk, Ilya Trushkin, Maksim Radionov, Aleksandr Mokrov, Dmitry Agapov, Jason Martin, Brandon Edwards, Micah J. Sheller, Sarthak Pati, Prakash Narayana Moorthy, Hans Shih-Han Wang, Prashant Shah, Spyridon Bakas:
OpenFL: An open-source framework for Federated Learning. CoRR abs/2105.06413 (2021) - [i2]Ujjwal Baid, Satyam Ghodasara, Michel Bilello, Suyash Mohan, Evan Calabrese, Errol Colak, Keyvan Farahani, Jayashree Kalpathy-Cramer, Felipe C. Kitamura, Sarthak Pati, Luciano M. Prevedello, Jeffrey D. Rudie, Chiharu Sako, Russell T. Shinohara, Timothy Bergquist, Rong Chai, James A. Eddy, Julia Elliott, Walter Reade, Thomas Schaffter, Thomas Yu, Jiaxin Zheng, BraTS Annotators, Christos Davatzikos, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, John B. Freymann, Justin S. Kirby, Benedikt Wiestler, Priscila Crivellaro, Rivka R. Colen, Aikaterini Kotrotsou, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Hassan M. Fathallah-Shaykh, Roland Wiest, András Jakab, Marc-André Weber, Abhishek Mahajan, Bjoern H. Menze, Adam E. Flanders, Spyridon Bakas:
The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification. CoRR abs/2107.02314 (2021) - 2020
- [j2]Siddhesh P. Thakur, Jimit Doshi, Sarthak Pati, Saima Rathore, Chiharu Sako, Michel Bilello, Sung Min Ha, Gaurav Shukla, Adam E. Flanders, Aikaterini Kotrotsou, Mikhail Milchenko, Spencer Liem, Gregory S. Alexander, Joseph Lombardo, Joshua D. Palmer, Pamela LaMontagne, Arash Nazeri, Sanjay N. Talbar, Spyridon Bakas:
Brain extraction on MRI scans in presence of diffuse glioma: Multi-institutional performance evaluation of deep learning methods and robust modality-agnostic training. NeuroImage 220: 117081 (2020) - [j1]Jirí Borovec, Jan Kybic, Ignacio Arganda-Carreras, Dmitry V. Sorokin, Gloria Bueno, Alexander V. Khvostikov, Spyridon Bakas, Eric I-Chao Chang, Stefan Heldmann, Kimmo Kartasalo, Leena Latonen, Johannes Lotz, Michelle Noga, Sarthak Pati, Kumaradevan Punithakumar, Pekka Ruusuvuori, Andrzej Skalski, Nazanin Tahmasebi, Masi Valkonen, Ludovic Venet, Yizhe Wang, Nick Weiss, Marek Wodzinski, Yu Xiang, Yan Xu, Yan Yan, Paul A. Yushkevich, Shengyu Zhao, Arrate Muñoz-Barrutia:
ANHIR: Automatic Non-Rigid Histological Image Registration Challenge. IEEE Trans. Medical Imaging 39(10): 3042-3052 (2020) - [c7]Sarthak Pati, Vaibhav Sharma, Heena Aslam, Siddhesh P. Thakur, Hamed Akbari, Andreas Mang, Shashank Subramanian, George Biros, Christos Davatzikos, Spyridon Bakas:
Estimating Glioblastoma Biophysical Growth Parameters Using Deep Learning Regression. BrainLes@MICCAI (1) 2020: 157-167
2010 – 2019
- 2019
- [c6]Siddhesh P. Thakur, Jimit Doshi, Sarthak Pati, Sung Min Ha, Chiharu Sako, Sanjay N. Talbar, Uday Kulkarni, Christos Davatzikos, Güray Erus, Spyridon Bakas:
Skull-Stripping of Glioblastoma MRI Scans Using 3D Deep Learning. BrainLes@MICCAI (1) 2019: 57-68 - [c5]Sarthak Pati, Ashish Singh, Saima Rathore, Aimilia Gastounioti, Mark Bergman, Phuc Ngo, Sung Min Ha, Dimitrios Bounias, James Minock, Grayson Murphy, Hongming Li, Amit Bhattarai, Adam Wolf, Patmaa Sridaran, Ratheesh Kalarot, Hamed Akbari, Aristeidis Sotiras, Siddhesh P. Thakur, Ragini Verma, Russell T. Shinohara, Paul A. Yushkevich, Yong Fan, Despina Kontos, Christos Davatzikos, Spyridon Bakas:
The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview. BrainLes@MICCAI (2) 2019: 380-394 - [i1]Ludovic Venet, Sarthak Pati, Paul A. Yushkevich, Spyridon Bakas:
Accurate and Robust Alignment of Variable-stained Histologic Images Using a General-purpose Greedy Diffeomorphic Registration Tool. CoRR abs/1904.11929 (2019) - 2017
- [c4]Saima Rathore, Spyridon Bakas, Sarthak Pati, Hamed Akbari, Ratheesh Kalarot, Patmaa Sridharan, Martin Rozycki, Mark Bergman, Birkan Tunç, Ragini Verma, Michel Bilello, Christos Davatzikos:
Brain Cancer Imaging Phenomics Toolkit (brain-CaPTk): An Interactive Platform for Quantitative Analysis of Glioblastoma. BrainLes@MICCAI 2017: 133-145 - 2016
- [c3]Ke Zeng, Spyridon Bakas, Aristeidis Sotiras, Hamed Akbari, Martin Rozycki, Saima Rathore, Sarthak Pati, Christos Davatzikos:
Segmentation of Gliomas in Pre-operative and Post-operative Multimodal Magnetic Resonance Imaging Volumes Based on a Hybrid Generative-Discriminative Framework. BrainLes@MICCAI 2016: 184-194 - 2015
- [c2]Spyridon Bakas, Ke Zeng, Aristeidis Sotiras, Saima Rathore, Hamed Akbari, Bilwaj Gaonkar, Martin Rozycki, Sarthak Pati, Christos Davatzikos:
GLISTRboost: Combining Multimodal MRI Segmentation, Registration, and Biophysical Tumor Growth Modeling with Gradient Boosting Machines for Glioma Segmentation. Brainles@MICCAI 2015: 144-155 - 2013
- [c1]Sarthak Pati, Okan Erat, Lejing Wang, Simon Weidert, Ekkehard Euler, Nassir Navab, Pascal Fallavollita:
Accurate pose estimation using single marker single camera calibration system. Image-Guided Procedures 2013: 867126
Coauthor Index
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