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2020 – today
- 2023
[j30]Zachary M. C. Baum
, Yipeng Hu, Dean C. Barratt:
Meta-Learning Initializations for Interactive Medical Image Registration. IEEE Trans. Medical Imaging 42(3): 823-833 (2023)- [i36]Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu:
Non-rigid Medical Image Registration using Physics-informed Neural Networks. CoRR abs/2302.10343 (2023) - [i35]Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. CoRR abs/2303.02094 (2023) - 2022
- [j29]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Image quality assessment for machine learning tasks using meta-reinforcement learning. Medical Image Anal. 78: 102427 (2022) - [j28]Sulaiman Vesal, Iani J. M. B. Gayo, Indrani Bhattacharya, Shyam Natarajan, Leonard S. Marks, Dean C. Barratt, Richard E. Fan, Yipeng Hu, Geoffrey A. Sonn, Mirabela Rusu:
Domain generalization for prostate segmentation in transrectal ultrasound images: A multi-center study. Medical Image Anal. 82: 102620 (2022) - [j27]Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt:
Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks. IEEE Trans. Medical Imaging 41(6): 1311-1319 (2022) - [j26]Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu:
Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. IEEE Trans. Medical Imaging 41(11): 3421-3431 (2022) - [c51]Yiwen Li, Yunguan Fu, Qianye Yang, Zhe Min, Wen Yan, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu:
FEW-SHOT Image Segmentation for Cross-Institution Male Pelvic Organs Using Registration-Assisted Prototypical Learning. ISBI 2022: 1-5 - [c50]Wen Yan, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, Dean C. Barratt, Bernard Chiu, Yipeng Hu:
The Impact of Using Voxel-Level Segmentation Metrics on Evaluating Multifocal Prostate Cancer Localisation. AMAI@MICCAI 2022: 128-138 - [c49]Zachary M. C. Baum, Tamas Ungi, Christopher Schlenger, Yipeng Hu, Dean C. Barratt:
Learning Generalized Non-rigid Multimodal Biomedical Image Registration from Generic Point Set Data. ASMUS@MICCAI 2022: 141-151 - [c48]Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu:
Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. CaPTion@MICCAI 2022: 149-158 - [c47]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Meta-registration: Learning Test-Time Optimization for Single-Pair Image Registration. ASMUS@MICCAI 2022: 162-171 - [c46]Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard E. Fan, Caroline M. Moore, Mirabela Rusu, Geoffrey A. Sonn, Philip H. S. Torr, Dean C. Barratt, Yipeng Hu:
Collaborative Quantization Embeddings for Intra-subject Prostate MR Image Registration. MICCAI (6) 2022: 237-247 - [i34]Yiwen Li, Yunguan Fu, Qianye Yang, Zhe Min, Wen Yan, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu:
Few-shot image segmentation for cross-institution male pelvic organs using registration-assisted prototypical learning. CoRR abs/2201.06358 (2022) - [i33]Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu:
Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. CoRR abs/2202.09798 (2022) - [i32]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Image quality assessment for machine learning tasks using meta-reinforcement learning. CoRR abs/2203.14258 (2022) - [i31]Wen Yan, Qianye Yang, Tom Syer, Zhe Min, Shonit Punwani, Mark Emberton, Dean C. Barratt, Bernard Chiu, Yipeng Hu:
The impact of using voxel-level segmentation metrics on evaluating multifocal prostate cancer localisation. CoRR abs/2203.16415 (2022) - [i30]Ziyi Shen, Qianye Yang, Yuming Shen, Francesco Giganti, Vasilis Stavrinides, Richard E. Fan, Caroline M. Moore, Mirabela Rusu, Geoffrey A. Sonn, Philip H. S. Torr, Dean C. Barratt, Yipeng Hu:
Collaborative Quantization Embeddings for Intra-Subject Prostate MR Image Registration. CoRR abs/2207.06189 (2022) - [i29]Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu:
Strategising template-guided needle placement for MR-targeted prostate biopsy. CoRR abs/2207.10784 (2022) - [i28]Zachary M. C. Baum, Tamas Ungi, Christopher Schlenger, Yipeng Hu, Dean C. Barratt:
Learning Generalized Non-Rigid Multimodal Biomedical Image Registration from Generic Point Set Data. CoRR abs/2207.10994 (2022) - [i27]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Meta-Registration: Learning Test-Time Optimization for Single-Pair Image Registration. CoRR abs/2207.10996 (2022) - [i26]Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu:
Cross-Modality Image Registration using a Training-Time Privileged Third Modality. CoRR abs/2207.12901 (2022) - [i25]Sulaiman Vesal, Iani J. M. B. Gayo, Indrani Bhattacharya, Shyam Natarajan, Leonard S. Marks, Dean C. Barratt, Richard E. Fan, Yipeng Hu, Geoffrey A. Sonn, Mirabela Rusu:
Domain Generalization for Prostate Segmentation in Transrectal Ultrasound Images: A Multi-center Study. CoRR abs/2209.02126 (2022) - [i24]Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu:
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. CoRR abs/2209.05160 (2022) - [i23]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Meta-Learning Initializations for Interactive Medical Image Registration. CoRR abs/2210.15371 (2022) - [i22]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames. CoRR abs/2211.04867 (2022) - [i21]Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu:
Active learning using adaptable task-based prioritisation. CoRR abs/2212.01703 (2022) - 2021
- [j25]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Real-time multimodal image registration with partial intraoperative point-set data. Medical Image Anal. 74: 102231 (2021) - [c45]Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu:
Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. IPMI 2021: 755-766 - [c44]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. ISBI 2021: 1072-1076 - [c43]Alexander Grimwood, João Ramalhinho, Zachary M. C. Baum, Nina Montaña Brown, Gavin J. Johnson, Yipeng Hu, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt, Ester Bonmati:
Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. ASMUS@MICCAI 2021: 169-178 - [c42]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. ASMUS@MICCAI 2021: 191-201 - [c41]Zhe Min, Fernando J. Bianco, Qianye Yang, Rachael Rodell, Wen Yan, Dean C. Barratt, Yipeng Hu:
Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR Images. MIUA 2021: 56-70 - [i20]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. CoRR abs/2101.06425 (2021) - [i19]Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu:
Learning image quality assessment by reinforcing task amenable data selection. CoRR abs/2102.07615 (2021) - [i18]Zhe Min, Fernando J. Bianco, Qianye Yang, Rachael Rodell, Wen Yan, Dean C. Barratt, Yipeng Hu:
Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR images. CoRR abs/2106.02385 (2021) - [i17]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Adaptable image quality assessment using meta-reinforcement learning of task amenability. CoRR abs/2108.04359 (2021) - [i16]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Real-time multimodal image registration with partial intraoperative point-set data. CoRR abs/2109.05023 (2021) - [i15]Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt:
Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks. CoRR abs/2110.06367 (2021) - 2020
- [d1]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5(55): 2705 (2020) - [c40]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Multimodality Biomedical Image Registration Using Free Point Transformer Networks. ASMUS/PIPPI@MICCAI 2020: 116-125 - [c39]Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean C. Barratt, Yipeng Hu:
Longitudinal Image Registration with Temporal-Order and Subject-Specificity Discrimination. MICCAI (3) 2020: 243-252 - [c38]Alex Grimwood, Helen McNair, Yipeng Hu, Ester Bonmati, Dean C. Barratt, Emma J. Harris:
Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification. MICCAI (3) 2020: 544-552 - [c37]Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu:
Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes. MICCAI (4) 2020: 650-659 - [i14]Shaheer U. Saeed, Zeike A. Taylor, Mark A. Pinnock, Mark Emberton, Dean C. Barratt, Yipeng Hu:
Prostate motion modelling using biomechanically-trained deep neural networks on unstructured nodes. CoRR abs/2007.04972 (2020) - [i13]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Multimodality Biomedical Image Registration using Free Point Transformer Networks. CoRR abs/2008.01885 (2020) - [i12]Zachary M. C. Baum, Ester Bonmati, Lorenzo Cristoni, Andrew Walden, Ferran Prados, Baris Kanber, Dean C. Barratt, David J. Hawkes, Geoffrey J. M. Parker, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu:
Image quality assessment for closed-loop computer-assisted lung ultrasound. CoRR abs/2008.08840 (2020) - [i11]Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean C. Barratt, Yipeng Hu:
Longitudinal Image Registration with Temporal-order and Subject-specificity Discrimination. CoRR abs/2008.13002 (2020) - [i10]Alexander Grimwood, Helen McNair, Yipeng Hu, Ester Bonmati, Dean C. Barratt, Emma J. Harris:
Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification. CoRR abs/2010.02732 (2020) - [i9]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. CoRR abs/2011.02580 (2020)
2010 – 2019
- 2019
- [j24]Nooshin Ghavami, Yipeng Hu, Eli Gibson, Ester Bonmati, Mark Emberton, Caroline M. Moore, Dean C. Barratt:
Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration. Medical Image Anal. 58 (2019) - [c36]João Ramalhinho, Henry F. J. Tregidgo, Moustafa Allam, Nikolina Travlou, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson:
Registration of Untracked 2D Laparoscopic Ultrasound Liver Images to CT Using Content-Based Retrieval and Kinematic Priors. SUSI/PIPPI@MICCAI 2019: 11-19 - [c35]Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren:
Conditional Segmentation in Lieu of Image Registration. MICCAI (2) 2019: 401-409 - [i8]Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren:
Conditional Segmentation in Lieu of Image Registration. CoRR abs/1907.00438 (2019) - 2018
- [j23]Ester Bonmati, Yipeng Hu, Eli Gibson, Laura Uribarri, Geri Keane, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt:
Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures. Int. J. Comput. Assist. Radiol. Surg. 13(6): 875-883 (2018) - [j22]João Ramalhinho, Maria R. Robu, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson:
A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images. Int. J. Comput. Assist. Radiol. Surg. 13(8): 1177-1186 (2018) - [j21]Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert J. Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Marc Modat, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren:
NiftyNet: a deep-learning platform for medical imaging. Comput. Methods Programs Biomed. 158: 113-122 (2018) - [j20]Yipeng Hu, Marc Modat, Eli Gibson, Wenqi Li, Nooshin Ghavami, Ester Bonmati, Guotai Wang, Steven Bandula, Caroline M. Moore, Mark Emberton, Sébastien Ourselin, J. Alison Noble, Dean C. Barratt, Tom Vercauteren:
Weakly-supervised convolutional neural networks for multimodal image registration. Medical Image Anal. 49: 1-13 (2018) - [j19]Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt:
Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks. IEEE Trans. Medical Imaging 37(8): 1822-1834 (2018) - [c34]Yipeng Hu, Marc Modat, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, J. Alison Noble, Dean C. Barratt, Tom Vercauteren:
Label-driven weakly-supervised learning for multimodal deformarle image registration. ISBI 2018: 1070-1074 - [c33]Eli Gibson, Yipeng Hu, Nooshin Ghavami, Hashim Uddin Ahmed, Caroline M. Moore, Mark Emberton, Henkjan J. Huisman, Dean C. Barratt:
Inter-site Variability in Prostate Segmentation Accuracy Using Deep Learning. MICCAI (4) 2018: 506-514 - [c32]Yipeng Hu, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, Tom Vercauteren, J. Alison Noble, Dean C. Barratt:
Adversarial Deformation Regularization for Training Image Registration Neural Networks. MICCAI (1) 2018: 774-782 - [c31]Ester Bonmati, Yipeng Hu, Nikhil Sindhwani, Hans Peter Dietz, Jan D'hooge, Dean C. Barratt, Jan Deprest, Tom Vercauteren:
Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. Medical Imaging: Image-Guided Procedures 2018: 105760K - [c30]Nooshin Ghavami, Yipeng Hu, Ester Bonmati, Rachael Rodell, Eli Gibson, Caroline M. Moore, Dean C. Barratt:
Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks. Medical Imaging: Image-Guided Procedures 2018: 1057603 - [i7]Yipeng Hu, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, Tom Vercauteren, J. Alison Noble, Dean C. Barratt:
Adversarial Deformation Regularization for Training Image Registration Neural Networks. CoRR abs/1805.10665 (2018) - [i6]Yipeng Hu, Marc Modat, Eli Gibson, Wenqi Li, Nooshin Ghavami, Ester Bonmati, Guotai Wang, Steven Bandula, Caroline M. Moore, Mark Emberton, Sébastien Ourselin, J. Alison Noble, Dean C. Barratt, Tom Vercauteren:
Weakly-Supervised Convolutional Neural Networks for Multimodal Image Registration. CoRR abs/1807.03361 (2018) - 2017
- [j18]Lianghao Han, Hua Dong, Jamie R. McClelland, Liangxiu Han, David J. Hawkes, Dean C. Barratt:
A hybrid patient-specific biomechanical model based image registration method for the motion estimation of lungs. Medical Image Anal. 39: 87-100 (2017) - [j17]Eli Gibson, Yipeng Hu, Henkjan J. Huisman, Dean C. Barratt:
Designing image segmentation studies: Statistical power, sample size and reference standard quality. Medical Image Anal. 42: 44-59 (2017) - [j16]Yipeng Hu, Veeru Kasivisvanathan, Lucy A. M. Simmons, Matthew J. Clarkson, Stephen A. Thompson, Taimur T. Shah, Hashim Uddin Ahmed, Shonit Punwani, David J. Hawkes, Mark Emberton, Caroline M. Moore, Dean C. Barratt:
Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy. IEEE Trans. Biomed. Eng. 64(4): 946-958 (2017) - [c29]Yipeng Hu, Eli Gibson, Li-Lin Lee, Weidi Xie, Dean C. Barratt, Tom Vercauteren, J. Alison Noble:
Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. CMMI/RAMBO/SWITCH@MICCAI 2017: 105-115 - [c28]Yipeng Hu, Eli Gibson, Tom Vercauteren, Hashim Uddin Ahmed, Mark Emberton, Caroline M. Moore, J. Alison Noble, Dean C. Barratt:
Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. MICCAI (2) 2017: 368-376 - [c27]Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt:
Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. MICCAI (1) 2017: 728-736 - [c26]Eli Gibson, Maria R. Robu, Stephen A. Thompson, Eddie Edwards, Crispin Schneider, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson:
Deep residual networks for automatic segmentation of laparoscopic videos of the liver. Medical Imaging: Image-Guided Procedures 2017: 101351M - [c25]João Ramalhinho, Maria Robu, Stephen A. Thompson, Philip J. Edwards, Crispin Schneider, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson:
Breathing motion compensated registration of laparoscopic liver ultrasound to CT. Medical Imaging: Image-Guided Procedures 2017: 101352V - [i5]Yipeng Hu, Eli Gibson, Li-Lin Lee, Weidi Xie, Dean C. Barratt, Tom Vercauteren, J. Alison Noble:
Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. CoRR abs/1707.05392 (2017) - [i4]Yipeng Hu, Eli Gibson, Tom Vercauteren, Hashim Uddin Ahmed, Mark Emberton, Caroline M. Moore, J. Alison Noble, Dean C. Barratt:
Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. CoRR abs/1709.02255 (2017) - [i3]Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren:
NiftyNet: a deep-learning platform for medical imaging. CoRR abs/1709.03485 (2017) - [i2]Yipeng Hu, Marc Modat, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, J. Alison Noble, Dean C. Barratt, Tom Vercauteren:
Label-driven weakly-supervised learning for multimodal deformable image registration. CoRR abs/1711.01666 (2017) - [i1]Ester Bonmati, Yipeng Hu, Nikhil Sindhwani, Hans Peter Dietz, Jan D'hooge, Dean C. Barratt, Jan Deprest, Tom Vercauteren:
Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. CoRR abs/1712.06452 (2017) - 2016
- [c24]Ester Bonmati, Yipeng Hu, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt:
Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound. CARE@MICCAI 2016: 36-47 - [c23]Yipeng Hu, Ester Bonmati, Eli Gibson, John H. Hipwell, David J. Hawkes, Steven Bandula, Stephen P. Pereira, Dean C. Barratt:
2D-3D Registration Accuracy Estimation for Optimised Planning of Image-Guided Pancreatobiliary Interventions. MICCAI (1) 2016: 516-524 - [c22]Eli Gibson, Ian A. Donaldson, Taimur T. Shah, Yipeng Hu, Hashim Uddin Ahmed, Dean C. Barratt:
Impact of region contouring variability on image-based focal therapy evaluation. Medical Imaging: Image-Guided Procedures 2016: 97861K - 2015
- [j15]Yi Song, Johannes Totz, Steve Thompson, Stian Flage Johnsen, Dean C. Barratt, Crispin Schneider, Kurinchi Gurusamy, Brian R. Davidson, Sébastien Ourselin, David J. Hawkes, Matthew J. Clarkson:
Locally rigid, vessel-based registration for laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. 10(12): 1951-1961 (2015) - [j14]Yipeng Hu, Eli Gibson, Hashim Uddin Ahmed, Caroline M. Moore, Mark Emberton, Dean C. Barratt:
Population-based prediction of subject-specific prostate deformation for MR-to-ultrasound image registration. Medical Image Anal. 26(1): 332-344 (2015) - [c21]Eli Gibson, Henkjan J. Huisman, Dean C. Barratt:
Statistical Power in Image Segmentation: Relating Sample Size to Reference Standard Quality. MICCAI (3) 2015: 105-113 - 2014
- [j13]Dean C. Barratt, Pierre Jannin, Gabor Fichtinger, Stephane Cotin:
Information processing in computer-assisted interventions: 4th international conference, 2013. Int. J. Comput. Assist. Radiol. Surg. 9(5): 755-757 (2014) - [j12]Geert Litjens, Robert Toth, Wendy J. M. van de Ven, Caroline Hoeks, Sjoerd Kerkstra, Bram van Ginneken, Graham Vincent, Gwenaël Guillard, Neil Birbeck, Jindang Zhang, Robin Strand, Filip Malmberg, Yangming Ou, Christos Davatzikos, Matthias Kirschner, Florian Jung, Jing Yuan, Wu Qiu, Qinquan Gao, Philip J. Edwards, Bianca Maan, Ferdinand van der Heijden, Soumya Ghose, Jhimli Mitra, Jason Dowling, Dean C. Barratt, Henkjan J. Huisman, Anant Madabhushi:
Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge. Medical Image Anal. 18(2): 359-373 (2014) - [j11]Lianghao Han, John H. Hipwell, Björn Eiben, Dean C. Barratt, Marc Modat, Sébastien Ourselin, David J. Hawkes:
A Nonlinear Biomechanical Model Based Registration Method for Aligning Prone and Supine MR Breast Images. IEEE Trans. Medical Imaging 33(3): 682-694 (2014) - [c20]Lianghao Han, David J. Hawkes, Dean C. Barratt:
A hybrid biomechanical model-based image registration method for sliding objects. Medical Imaging: Image Processing 2014: 90340G - [c19]Mahdi Orooji, Rachel Sparks, B. Nicolas Bloch, Ernest J. Feleppa, Dean C. Barratt, Anant Madabhushi:
Spatially aware expectation maximization (SpAEM): application to prostate TRUS segmentation. Medical Imaging: Image Processing 2014: 90343Y - 2013
- [j10]Devis Peressutti, Graeme P. Penney, Richard James Housden, Christoph Kolbitsch, Alberto Gómez, Erik-Jan Rijkhorst, Dean C. Barratt, Kawal S. Rhode, Andrew P. King:
A novel Bayesian respiratory motion model to estimate and resolve uncertainty in image-guided cardiac interventions. Medical Image Anal. 17(4): 488-502 (2013) - [c18]Rahul Prasanna Kumar, Erik-Jan Rijkhorst, Oliver Geier, Dean C. Barratt, Ole Jakob Elle:
Study on liver blood vessel movement during breathing cycle. CVCS 2013: 1-5 - [c17]Rachel Sparks, B. Nicolas Bloch, Ernest J. Feleppa, Dean C. Barratt, Anant Madabhushi:
Fully automated prostate magnetic resonance imaging and transrectal ultrasound fusion via a probabilistic registration metric. Medical Imaging: Image-Guided Procedures 2013: 86710A - [c16]Wendy J. M. van de Ven, Yipeng Hu, Jelle O. Barentsz, Nico Karssemeijer, Dean C. Barratt, Henkjan J. Huisman:
Surface-based prostate registration with biomechanical regularization. Medical Imaging: Image-Guided Procedures 2013: 86711R - [e2]Dean C. Barratt, Stephane Cotin, Gabor Fichtinger, Pierre Jannin, Nassir Navab:
Information Processing in Computer-Assisted Interventions - 4th International Conference, IPCAI 2013, Heidelberg, Germany, June 26, 2013. Proceedings. Lecture Notes in Computer Science 7915, Springer 2013, ISBN 978-3-642-38567-4 [contents] - 2012
- [j9]Yipeng Hu, Hashim Uddin Ahmed, Zeike A. Taylor, Clare Allen, Mark Emberton, David J. Hawkes, Dean C. Barratt:
MR to ultrasound registration for image-guided prostate interventions. Medical Image Anal. 16(3): 687-703 (2012) - [c15]Devis Peressutti, Erik-Jan Rijkhorst, Dean C. Barratt, Graeme P. Penney, Andy P. King:
Estimating and resolving uncertainty in cardiac respiratory motion modelling. ISBI 2012: 262-265 - 2011
- [j8]Yipeng Hu, Timothy J. Carter, Hashim Uddin Ahmed, Mark Emberton, Clare Allen, David J. Hawkes, Dean C. Barratt:
Modelling Prostate Motion for Data Fusion During Image-Guided Interventions. IEEE Trans. Medical Imaging 30(11): 1887-1900 (2011) - [c14]Erik-Jan Rijkhorst, Ian Rivens, Gail ter Haar, David J. Hawkes, Dean C. Barratt:
Effects of Respiratory Liver Motion on Heating for Gated and Model-Based Motion-Compensated High-Intensity Focused Ultrasound Ablation. MICCAI (1) 2011: 605-612 - [e1]