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ORCIDLeyla Jael Castro
Person information
- affiliation: ZB MED - Information Centre for Life Sciences, Cologne, Germany
- affiliation: European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
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2020 – today
- 2022
[j19]Bernd Müller
, Leyla Jael Castro, Dietrich Rebholz-Schuhmann:
Ontology-based identification and prioritization of candidate drugs for epilepsy from literature. J. Biomed. Semant. 13(1): 3 (2022)- [j18]João Cardoso, Leyla Jael Castro, Fajar J. Ekaputra, Marie C. Jacquemot, Marek Suchánek, Tomasz Miksa, José Borbinha:
DCSO: towards an ontology for machine-actionable data management plans. J. Biomed. Semant. 13(1): 21 (2022) - [e3]Katy Wolstencroft, Andrea Splendiani, M. Scott Marshall, Chris Baker, Andra Waagmeester, Marco Roos, Rutger A. Vos, Rianne Fijten, Leyla Jael Castro:
13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4HCLS 2022, Virtual Event, Leiden, The Netherlands, January 10th to 14th, 2022. CEUR Workshop Proceedings 3127, CEUR-WS.org 2022 [contents] - [i3]Philipp Schaer, Timo Breuer, Leyla Jael Castro, Benjamin Wolff, Johann Schaible, Narges Tavakolpoursaleh:
Overview of LiLAS 2021 - Living Labs for Academic Search. CoRR abs/2203.05430 (2022) - 2021
- [j17]Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Rahat Agivetova, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Borisas Bursteinas, Hema Bye-A-Jee, Ray Coetzee, Austra Cukura, Alan W. Sousa da Silva, Paul Denny, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Leyla Jael García Castro, Penelope Garmiri, George E. Georghiou, Leonardo Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Petteri Jokinen, Vishal Joshi, Dushyanth Jyothi, Antonia Lock, Rodrigo Lopez, Aurelien Luciani, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Manuela Menchi, Alok Mishra, Katie Moulang, Andrew Nightingale, Carla Susana Oliveira, Sangya Pundir, Guoying Qi, Shriya Raj, Daniel Rice, Milagros Rodríguez-López, Rabie Saidi, Joseph Sampson, Tony Sawford, Elena Speretta, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Vladimir Volynkin, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Alan Bridge, Sylvain Poux, Nicole Redaschi, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Delphine Baratin, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Edouard De Castro, Kamal Chikh Echioukh, Elisabeth Coudert, Béatrice A. Cuche, Mikael Doche, Dolnide Dornevil, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Sebastien Gehant, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Guillaume Keller, Arnaud Kerhornou, Vicente Lara, Philippe Le Mercier, Damien Lieberherr, Thierry Lombardot, Xavier Martin, Patrick Masson, Anne Morgat, Teresa Batista Neto, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Monica Pozzato, Manuela Pruess, Catherine Rivoire, Christian J. A. Sigrist, Karin Sonesson, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang, Lai-Su Yeh, Jian Zhang, Patrick Ruch, Douglas Teodoro:
UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res. 49(Database-Issue): D480-D489 (2021) - [c23]Philipp Schaer, Timo Breuer, Leyla Jael Castro, Benjamin Wolff, Johann Schaible, Narges Tavakolpoursaleh:
Overview of LiLAS 2021 - Living Labs for Academic Search. CLEF 2021: 394-418 - [c22]Philipp Schaer, Timo Breuer, Leyla Jael Castro, Benjamin Wolff, Johann Schaible, Narges Tavakolpoursaleh:
Overview of LiLAS 2021 - Living Labs for Academic Search (Extended Overview). CLEF (Working Notes) 2021: 1668-1699 - [c21]Daniel S. Katz, Fotis E. Psomopoulos, Leyla Jael Castro:
Working Towards Understanding the Role of FAIR for Machine Learning. DaMaLOS 2021: 1-6 - [c20]Philipp Schaer, Johann Schaible, Leyla Jael Castro:
Living Lab Evaluation for Life and Social Sciences Search Platforms - LiLAS at CLEF 2021. ECIR (2) 2021: 657-664 - [c19]Ashley Ritchie, Jiaoyan Chen, Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Ernesto Jiménez-Ruiz:
Ontology Clustering with OWL2Vec. DeepOntoNLP/X-SENTIMENT@ESWC 2021: 54-61 - [e2]Leyla Jael Castro, Markus Stocker, Dietrich Rebholz-Schuhmann:
DaMaLOS - Second Workshop on Data and Research Objects Management for Linked Open Science, Co-located at the International Semantic Web Conference ISWC 2021, Virtual Conference, October 24, 2021. 2021 [contents] - [i2]Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José M. Fernández, Daniel Garijo, Björn A. Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole A. Goble:
Packaging research artefacts with RO-Crate. CoRR abs/2108.06503 (2021) - 2020
- [j16]Robel Y. Kahsay, Jeet Vora, Rahi Navelkar, Reza Mousavi, Brian C. Fochtman, Xavier Holmes, Nagarajan Pattabiraman, René Ranzinger, Rupali Mahadik, Tatiana Williamson, Sujeet Kulkarni, Gaurav Agarwal, Maria Jesus Martin, Preethi Vasudev, Leyla J. García, Nathan Edwards, Wenjin Zhang, Darren A. Natale, Karen Ross, Kiyoko F. Aoki-Kinoshita, Matthew P. Campbell, William S. York, Raja Mazumder:
GlyGen data model and processing workflow. Bioinform. 36(12): 3941-3943 (2020) - [j15]Anna-Lena Lamprecht, Leyla J. García, Mateusz Kuzak, Carlos Martinez-Ortiz, Ricardo Arcila, Eva Martin Del Pico, Victoria Dominguez Del Angel, Stephanie van de Sandt, Jon C. Ison, Paula Andrea Martínez, Peter McQuilton, Alfonso Valencia, Jennifer L. Harrow, Fotis E. Psomopoulos, Josep Lluis Gelpí, Neil P. Chue Hong, Carole A. Goble, Salvador Capella-Gutiérrez:
Towards FAIR principles for research software. Data Sci. 3(1): 37-59 (2020) - [j14]Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa:
39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. Data Sci. J. 19: 47 (2020) - [j13]Leyla J. García, Erick Antezana, Alexander García Castro, Evan Bolton, Rafael C. Jimenez, Pjotr Prins, Juan M. Banda, Toshiaki Katayama:
Ten simple rules to run a successful BioHackathon. PLoS Comput. Biol. 16(5) (2020) - [j12]Leyla J. García, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis E. Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez Del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, Patricia M. Palagi:
Ten simple rules for making training materials FAIR. PLoS Comput. Biol. 16(5) (2020) - [c18]Philipp Schaer, Johann Schaible, Leyla Jael García Castro:
Overview of LiLAS 2020 - Living Labs for Academic Search. CLEF 2020: 364-371 - [c17]Philipp Schaer, Johann Schaible, Leyla Jael García Castro:
Overview of LiLAS 2020 - Living Labs for Academic Search Workshop Lab (extended abstract). CLEF (Working Notes) 2020 - [c16]João Cardoso, Leyla J. García, Fajar J. Ekaputra, Marie C. Jacquemot, Tomasz Miksa, José Borbinha:
Towards semantic representation of machine-actionable Data Management Plans. DaMaLOS 2020: 1-9 - [c15]Leyla J. García, Michelle Barker, Neil P. Chue Hong, Fotis E. Psomopoulos, Jennifer L. Harrow, Daniel S. Katz, Mateusz Kuzak, Paula Andrea Martínez, Allegra Via:
Software as a first-class citizen in research. DaMaLOS 2020: 1-8 - [e1]Leyla Jael García Castro, Sören Auer, Maria-Esther Vidal, Dietrich Rebholz-Schuhmann:
DaMaLOS - First Workshop on Data and Research Objects Management for Linked Open Science, Co-located at the International Semantic Web Conference ISWC 2020, Virtual Conference, November 2-3, 2020. 2020 [contents] - [i1]Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa:
39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. CoRR abs/2012.08325 (2020)
2010 – 2019
- 2018
- [j11]Denise Carvalho-Silva, Leyla J. García, Sarah L. Morgan, Cath Brooksbank, Ian Dunham:
Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars. PLoS Comput. Biol. 14(11) (2018) - 2017
- [j10]Xavier Watkins, Leyla J. García, Sangya Pundir, Maria Jesus Martin, The UniProt Consortium:
ProtVista: visualization of protein sequence annotations. Bioinform. 33(13): 2040-2041 (2017) - [c14]Leyla J. García, Olga L. Giraldo, Alexander García Castro, Michel Dumontier, Bioschemas Community:
Bioschemas: schema.org for the Life Sciences. SWAT4LS 2017 - 2016
- [c13]Leyla J. García, Leonardo Gonzales, Maria Jesus Martin:
A Graph-based Taxonomy RESTful Data Service. SWAT4LS 2016 - 2015
- [j9]Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho:
Building Domain Ontologies Out of Folksonomies and Linked Data. Int. J. Artif. Intell. Tools 24(2): 1540014:1-1540014:22 (2015) - [j8]Leyla Jael García Castro, Rafael Berlanga Llavori, Alexander García Castro:
In the pursuit of a semantic similarity metric based on UMLS annotations for articles in PubMed Central Open Access. J. Biomed. Informatics 57: 204-218 (2015) - 2014
- [j7]Simon Jupp, James Malone, Jerven T. Bolleman, Marco Brandizi, Mark Davies, Leyla J. García, Anna Gaulton, Sebastien Gehant, Camille Laibe, Nicole Redaschi, Sarala M. Wimalaratne, Maria Jesus Martin, Nicolas Le Novère, Helen E. Parkinson, Ewan Birney, Andrew M. Jenkinson:
The EBI RDF platform: linked open data for the life sciences. Bioinform. 30(9): 1338-1339 (2014) - [c12]Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho:
Social Tags and Linked Data for Ontology Development: A Case Study in the Financial Domain. WIMS 2014: 32:1-32:10 - 2013
- [j6]John Gómez, Leyla J. García, Gustavo A. Salazar, Jose M. Villaveces, Swanand P. Gore, Alexander García Castro, Maria Jesus Martin, Guillaume Launay, Rafael Alcántara, Noemi del-Toro, Marine Dumousseau, Sandra E. Orchard, Sameer Velankar, Henning Hermjakob, Chenggong Zong, Peipei Ping, Manuel Corpas, Rafael C. Jimenez:
BioJS: an open source JavaScript framework for biological data visualization. Bioinform. 29(8): 1103-1104 (2013) - [j5]Leyla Jael García Castro, Casey McLaughlin, Alexander García Castro:
Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data. J. Biomed. Semant. 4(S-1): S5 (2013) - [c11]Leyla Jael García Castro, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann, Alexander García Castro:
Connections across Scientific Publications based on Semantic Annotations. SePublica 2013: 51-62 - 2012
- [c10]Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro:
Using annotations to model discourse: an extension to the Annotation Ontology. SePublica@ESWC 2012: 13-22 - [c9]Leyla Jael García Castro, Alexander García Castro, John Gómez:
Conceptual Exploration of Documents and Digital Libraries in the Biomedical Domain. SWAT4LS 2012 - 2011
- [j4]Jose M. Villaveces, Rafael C. Jimenez, Leyla J. García, Gustavo A. Salazar, Bernat Gel, Nicola J. Mulder, Maria Jesus Martin, Alexander García Castro, Henning Hermjakob:
Dasty3, a WEB framework for DAS. Bioinform. 27(18): 2616-2617 (2011) - [j3]Paolo Ciccarese, Marco Ocana, Leyla Jael García Castro, Sudeshna Das, Tim Clark:
An open annotation ontology for science on web 3.0. J. Biomed. Semant. 2(S-2): S4 (2011) - [c8]Alexander García Castro, Olga L. Giraldo, Leyla J. García:
Annotating Experimental Records Using Ontologies. ICBO 2011 - [c7]Alexander García Castro, Leyla Jael García Castro:
A translational model for representing research articles. SWAT4LS 2011: 20-21 - [c6]Leyla Jael García Castro, Alexander García Castro:
Tagsty: augmented knowledge from community-based annotations on protein sequences. SWAT4LS 2011: 22-23 - 2010
- [j2]Alexander García Castro, Alberto Labarga, Leyla J. García, Olga L. Giraldo, César Montaña, John A. Bateman:
Semantic Web and Social Web heading towards Living Documents in the Life Sciences. J. Web Semant. 8(2-3): 155-162 (2010) - [c5]Leyla Jael García Castro, Martin Hepp, Alexander García Castro:
TagSorting: A Tagging Environment for Collaboratively Building Ontologies. EKAW 2010: 462-472 - [c4]Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro:
Using the Annotation Ontology in Semantic Digital Libraries. ISWC (Posters & Demos) 2010 - [p1]Alexander García Castro, Kieran O'Neill, Leyla Jael García Castro, Phillip W. Lord, Robert Stevens, Óscar Corcho, Frank Gibson:
Developing Ontologies within Decentralised Settings. Semantic e-Science 2010: 99-139
2000 – 2009
- 2009
- [c3]Alexander García Castro, Leyla Jael García Castro, Alberto Labarga, Olga L. Giraldo, César Montaña, Kieran O'Neill, John A. Bateman:
Annotating Atomic Components of Papers in Digital Libraries: The Semantic and Social Web Heading towards a Living Document Supporting eSciences. DEXA 2009: 287-301 - [c2]Leyla Jael García Castro, Martin Hepp, Alexander García Castro:
Tags4Tags: Using Tagging to Consolidate Tags. DEXA 2009: 619-628 - 2008
- [c1]Alexander García Castro, Angela Norena, Andres Betancourt, Leyla J. García:
CMAPS Supporting the Development of OWL Ontologies. ISWC (Posters & Demos) 2008 - 2005
- [j1]Alexander García Castro, Samuel Thoraval, Leyla J. García, Mark A. Ragan:
Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator. BMC Bioinform. 6: 87 (2005)
Coauthor Index
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