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- affiliation: Universidade de Lisboa, Portugal
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2020 – today
- 2020
[j13]Rita T. Sousa
, Sara Silva, Catia Pesquita:
Evolving knowledge graph similarity for supervised learning in complex biomedical domains. BMC Bioinform. 21(1): 6 (2020)- [j12]Lu Zhou, Élodie Thiéblin, Michelle Cheatham, Daniel Faria, Catia Pesquita, Cássia Trojahn dos Santos, Ondrej Zamazal:
Towards evaluating complex ontology alignments. Knowl. Eng. Rev. 35: e21 (2020) - [j11]Daniel Faria, Alfio Ferrara, Ernesto Jiménez-Ruiz, Stefano Montanelli, Catia Pesquita:
Crowd-assessing quality in uncertain data linking datasets. Knowl. Eng. Rev. 35: e33 (2020) - [c44]Carlota Cardoso, Rita T. Sousa, Sebastian Köhler, Catia Pesquita:
A Collection of Benchmark Data Sets for Knowledge Graph-Based Similarity in the Biomedical Domain. ESWC (Satellite Events) 2020: 50-55 - [e6]Valentina Ivanova, Patrick Lambrix, Catia Pesquita, Vitalis Wiens:
Proceedings of the Fifth International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 19th International Semantic Web Conference (ISWC 2020), Virtual Conference (originally planned in Athens, Greece), November 02, 2020. CEUR Workshop Proceedings 2778, CEUR-WS.org 2020 [contents]
2010 – 2019
- 2019
- [j10]Huanyu Li, Zlatan Dragisic, Daniel Faria, Valentina Ivanova, Ernesto Jiménez-Ruiz, Patrick Lambrix, Catia Pesquita:
User validation in ontology alignment: functional assessment and impact. Knowl. Eng. Rev. 34: e15 (2019) - [j9]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Visualization and interaction for ontologies and linked data - Editorial. J. Web Semant. 55: 145-149 (2019) - [c43]Alsayed Algergawy, Daniel Faria, Alfio Ferrara, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Naouel Karam, Abderrahmane Khiat, Patrick Lambrix, Huanyu Li, Stefano Montanelli, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vatascinová, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2019. OM@ISWC 2019: 46-85 - [c42]Daniel Faria, Catia Pesquita, Teemu Tervo, Francisco M. Couto, Isabel F. Cruz:
AML and AMLC Results for OAEI 2019. OM@ISWC 2019: 101-106 - 2018
- [j8]Daniela Oliveira, Catia Pesquita:
Improving the interoperability of biomedical ontologies with compound alignments. J. Biomed. Semant. 9(1): 1:1-1:13 (2018) - [j7]Daniel Faria, Catia Pesquita, Isabela Mott, Catarina Martins, Francisco M. Couto, Isabel F. Cruz:
Tackling the challenges of matching biomedical ontologies. J. Biomed. Semant. 9(1): 4:1-4:19 (2018) - [j6]Michelle Cheatham, Catia Pesquita, Daniela Oliveira, Helena B. McCurdy:
The properties of property alignment on the semantic web. Int. J. Metadata Semant. Ontologies 13(1): 42-56 (2018) - [c41]Catia Pesquita, Valentina Ivanova, Steffen Lohmann, Patrick Lambrix:
A Framework to Conduct and Report on Empirical User Studies in Semantic Web Contexts. EKAW 2018: 567-583 - [c40]Alsayed Algergawy, Michelle Cheatham, Daniel Faria, Alfio Ferrara, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Naouel Karam, Abderrahmane Khiat, Patrick Lambrix, Huanyu Li, Stefano Montanelli, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Daniela Schmidt, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vatascinová, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2018. OM@ISWC 2018: 76-116 - [c39]Daniel Faria, Catia Pesquita, Booma Sowkarthiga Balasubramani, Teemu Tervo, David Carriço, Rodrigo Garrilha, Francisco M. Couto, Isabel F. Cruz:
Results of AML participation in OAEI 2018. OM@ISWC 2018: 125-131 - [c38]Madalena Pavão, Catia Pesquita:
Complex matching for multiple ontologies: an exploratory study. OM@ISWC 2018: 222-223 - [e5]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Proceedings of the Fourth International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 17th International Semantic Web Conference, VOILA@ISWC 2018, Monterey, CA, USA, October 8, 2018. CEUR Workshop Proceedings 2187, CEUR-WS.org 2018 [contents] - 2017
- [j5]Michelle Cheatham, Isabel F. Cruz, Jérôme Euzenat, Catia Pesquita:
Special issue on ontology and linked data matching. Semantic Web 8(2): 183-184 (2017) - [c37]Manel Achichi, Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Ian Harrow, Valentina Ivanova, Ernesto Jiménez-Ruiz, Kristian Kolthoff, Elena Kuss, Patrick Lambrix, Henrik Leopold, Huanyu Li, Christian Meilicke, Majid Mohammadi, Stefano Montanelli, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Heiner Stuckenschmidt, Élodie Thiéblin, Konstantin Todorov, Cássia Trojahn, Ondrej Zamazal:
Results of the Ontology Alignment Evaluation Initiative 2017. OM@ISWC 2017: 61-113 - [c36]Daniel Faria, Booma S. Balasubramani, Vivek R. Shivaprabhu, Isabela Mott, Catia Pesquita, Francisco M. Couto, Isabel F. Cruz:
Results of AML in OAEI 2017. OM@ISWC 2017: 122-128 - [p1]Michelle Cheatham, Catia Pesquita:
Semantic Data Integration. Handbook of Big Data Technologies 2017: 263-305 - [e4]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Proceedings of the Third International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 22, 2017. CEUR Workshop Proceedings 1947, CEUR-WS.org 2017 [contents] - 2016
- [c35]Marzieh Bakhshandeh, Catia Pesquita, José Luis Borbinha:
An Ontological Matching Approach for Enterprise Architecture Model Analysis. BIS 2016: 315-326 - [c34]João Manuel Fernandes Cardoso, Marzieh Bakhshandeh, Daniel Faria, Catia Pesquita, José Luis Borbinha:
Ontology-Based Approach for Heterogeneity Analysis of EA Models. Business Process Management Workshops 2016: 131-142 - [c33]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Workshop Summary. VOILA@ISWC 2016: 1-4 - [c32]Manel Achichi, Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Ian Harrow, Valentina Ivanova, Ernesto Jiménez-Ruiz, Elena Kuss, Patrick Lambrix, Henrik Leopold, Huanyu Li, Christian Meilicke, Stefano Montanelli, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Heiner Stuckenschmidt, Konstantin Todorov, Cássia Trojahn dos Santos, Ondrej Zamazal:
Results of the Ontology Alignment Evaluation Initiative 2016. OM@ISWC 2016: 73-129 - [c31]Daniel Faria, Catia Pesquita, Booma S. Balasubramani, Catarina Martins, João Manuel Fernandes Cardoso, Hugo Curado, Francisco M. Couto, Isabel F. Cruz:
OAEI 2016 results of AML. OM@ISWC 2016: 138-145 - [c30]Zlatan Dragisic, Valentina Ivanova, Patrick Lambrix, Daniel Faria, Ernesto Jiménez-Ruiz, Catia Pesquita:
User Validation in Ontology Alignment. International Semantic Web Conference (1) 2016: 200-217 - [e3]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Proceedings of the Second International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 15th International Semantic Web Conference, VOILA@ISWC 2016, Kobe, Japan, October 17, 2016. CEUR Workshop Proceedings 1704, CEUR-WS.org 2016 [contents] - 2015
- [c29]Gonçalo Antunes, Marzieh Bakhshandeh, José Luis Borbinha, João Manuel Fernandes Cardoso, Sharam Dadashnia, Chiara Di Francescomarino, Mauro Dragoni, Peter Fettke, Avigdor Gal, Chiara Ghidini, Philip Hake, Abderrahmane Khiat, Christopher Klinkmüller, Elena Kuss, Henrik Leopold, Peter Loos, Christian Meilicke, Tim Niesen, Catia Pesquita, Timo Péus, Andreas Schoknecht, Eitam Sheetrit, Andreas Sonntag, Heiner Stuckenschmidt, Tom Thaler, Ingo Weber, Matthias Weidlich:
The Process Model Matching Contest 2015. EMISA 2015: 127-155 - [c28]Catarina Martins, Daniel Faria, Catia Pesquita:
Visualization and editing of biomedical ontology alignments in AgreementMakerLight. ICBO 2015 - [c27]Catarina Martins, Ernesto Jiménez-Ruiz, Emanuel Santos, Catia Pesquita:
Towards visualizing the mapping incoherences in Bioportal. ICBO 2015 - [c26]Daniela Oliveira, Catia Pesquita:
Compound matching of biomedical ontologies. ICBO 2015 - [c25]Daniela Oliveira, Catia Pesquita:
Inferring logical definitions using compound ontology matching. ICBO 2015 - [c24]Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Roger Granada, Valentina Ivanova, Ernesto Jiménez-Ruiz, Patrick Lambrix, Stefano Montanelli, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Alessandro Solimando, Cássia Trojahn dos Santos, Ondrej Zamazal:
Results of the Ontology Alignment Evaluation Initiative 2015. OM 2015: 60-115 - [c23]Daniel Faria, Catarina Martins, Amruta Nanavaty, Daniela Oliveira, Booma Sowkarthiga, Aynaz Taheri, Catia Pesquita, Francisco M. Couto, Isabel F. Cruz:
AML results for OAEI 2015. OM 2015: 116-123 - [c22]Marzieh Bakhshandeh, Catia Pesquita, José Luis Borbinha:
Ontology matching techniques for enterprise architecture models. OM 2015: 236-237 - [e2]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Proceedings of the International Workshop on Visualizations and User Interfaces for Ontologies and Linked Data co-located with 14th International Semantic Web Conference (ISWC 2015), Bethlehem, Pennsylvania, USA, October 11, 2015. CEUR Workshop Proceedings 1456, CEUR-WS.org 2015 [contents] - 2014
- [j4]Catia Pesquita, João D. Ferreira, Francisco M. Couto, Mário J. Silva:
The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources. J. Biomed. Semant. 5: 4 (2014) - [c21]Catia Pesquita, Daniel Faria, Emanuel Santos, Jean-Marc Neefs, Francisco M. Couto:
Towards Visualizing the Alignment of Large Biomedical Ontologies. DILS 2014: 104-111 - [c20]Valentina Ivanova, Tomi Kauppinen, Steffen Lohmann, Suvodeep Mazumdar, Catia Pesquita, Kai Xu:
Introduction to VISUAL 2014 - Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics. EKAW (Satellite Events) 2014: 80-82 - [c19]Daniel Faria, Ernesto Jiménez-Ruiz, Catia Pesquita, Emanuel Santos, Francisco M. Couto:
Towards Annotating Potential Incoherences in BioPortal Mappings. International Semantic Web Conference (2) 2014: 17-32 - [c18]Daniel Faria, Catarina Martins, Amruta Nanavaty, Aynaz Taheri, Catia Pesquita, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto:
AgreementMakerLight results for OAEI 2014. OM 2014: 105-112 - [c17]Catia Pesquita, Michelle Cheatham, Daniel Faria, Joana Barros, Emanuel Santos, Francisco M. Couto:
Building reference alignments for compound matching of multiple ontologies using OBO cross-products. OM 2014: 172-173 - [c16]Daniel Faria, Catia Pesquita, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto:
AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching. International Semantic Web Conference (Posters & Demos) 2014: 457-460 - [e1]Valentina Ivanova, Tomi Kauppinen, Steffen Lohmann, Suvodeep Mazumdar, Catia Pesquita, Kai Xu:
Proceedings of the International Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics co-located with 19th International Conference on Knowledge Engineering and Knowledge Management, VISUAL@EKAW 2014, Linköping, Sweden, November 24, 2014. CEUR Workshop Proceedings 1299, CEUR-WS.org 2014 [contents] - 2013
- [c15]João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva:
Digital preservation of epidemic resources: coupling metadata and ontologies. iPRES 2013 - [c14]Daniel Faria, Catia Pesquita, Emanuel Santos, Matteo Palmonari, Isabel F. Cruz, Francisco M. Couto:
The AgreementMakerLight Ontology Matching System. OTM Conferences 2013: 527-541 - [c13]Catia Pesquita, Daniel Faria, Emanuel Santos, Francisco M. Couto:
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments. OM 2013: 13-24 - [c12]Daniel Faria, Catia Pesquita, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto:
AgreementMakerLight results for OAEI 2013. OM 2013: 101-108 - [c11]Catia Pesquita, Daniel Faria, Cosmin Stroe, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto:
What's in a 'nym'? Synonyms in Biomedical Ontology Matching. International Semantic Web Conference (1) 2013: 526-541 - [i2]Emanuel Santos, Daniel Faria, Catia Pesquita, Francisco M. Couto:
Ontology alignment repair through modularization and confidence-based heuristics. CoRR abs/1307.5322 (2013) - 2012
- [j3]Catia Pesquita, Francisco M. Couto:
Predicting the Extension of Biomedical Ontologies. PLoS Comput. Biol. 8(9) (2012) - [c10]João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva:
Bringing epidemiology into the Semantic Web. ICBO 2012 - [i1]Daniel Faria, Catia Pesquita, Emanuel Santos, Francisco M. Couto, Cosmin Stroe, Isabel F. Cruz:
Testing the AgreementMaker System in the Anatomy Task of OAEI 2012. CoRR abs/1212.1625 (2012) - 2011
- [c9]Isabel F. Cruz, Cosmin Stroe, Catia Pesquita, Francisco M. Couto, Valerie Cross:
Biomedical Ontology Matching Using the AgreementMaker System. ICBO 2011 - [c8]Catia Pesquita, Francisco M. Couto:
Where GO is Going and What it Means for Ontology Extension. ICBO 2011 - [c7]Bruno Tavares, Hugo P. Bastos, Daniel Faria, João D. Ferreira, Tiago Grego, Catia Pesquita, Francisco M. Couto:
The Biomedical Ontology Applications (BOA) Framework. ICBO 2011 - [c6]Isabel F. Cruz, Cosmin Stroe, Federico Caimi, Alessio Fabiani, Catia Pesquita, Francisco M. Couto, Matteo Palmonari:
Using AgreementMaker to align ontologies for OAEI 2011. OM 2011 - 2010
- [c5]Catia Pesquita, Cosmin Stroe, Isabel F. Cruz, Francisco M. Couto:
BLOOMS on AgreementMaker: results for OAEI 2010. OM 2010
2000 – 2009
- 2009
- [j2]Catia Pesquita, Daniel Faria, André O. Falcão, Phillip W. Lord, Francisco M. Couto:
Semantic Similarity in Biomedical Ontologies. PLoS Comput. Biol. 5(7) (2009) - [c4]Catia Pesquita, Tiago Grego, Francisco M. Couto:
Identifying Gene Ontology Areas for Automated Enrichment. IWANN (2) 2009: 934-941 - [c3]Catia Pesquita, Daniel Faria, Francisco M. Couto:
Measuring coherence between electronic and manual annotations in biological databases. SAC 2009: 806-807 - 2008
- [j1]Catia Pesquita, Daniel Faria, Hugo P. Bastos, António E. N. Ferreira, André O. Falcão, Francisco M. Couto:
Metrics for GO based protein semantic similarity: a systematic evaluation. BMC Bioinform. 9(S-5) (2008) - [c2]Francisco M. Couto, Tiago Grego, Hugo P. Bastos, Catia Pesquita, Rafael P. Torres, Pablo Sanchez, Leandro Pascual, Christian Blaschke:
Identifying bioentity recognition errors of rule-based text-mining systems. ICDIM 2008: 733-738 - [c1]Hugo P. Bastos, Catia Pesquita, Daniel Faria, André O. Falcão:
BOLOS: BLAST & Ontology Linked-hOmologue Stars. SAC 2008: 1278-1281
Coauthor Index
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