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ORCIDTatsuya Kushida
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2020 – today
- 2024
[j3]Yuki Yamagata
, Tatsuya Kushida, Shuichi Onami, Hiroshi Masuya:
Homeostasis imbalance process ontology: a study on COVID-19 infectious processes. BMC Medical Informatics Decis. Mak. 23-S(4): 301 (2024)- 2023
- [c13]Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya:
Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets. SWAT4HCLS 2023: 177-178 - 2021
- [c12]Asiyah Yu Lin, Yuki Yamagata, William D. Duncan, Leigh C. Carmody, Tatsuya Kushida, Hiroshi Masuya, John Beverley, Biswanath Dutta, Michael DeBellis, Zoë May Pendlington, Paola Roncaglia, Yongqun He:
A Community Effort for COVID-19 Ontology Harmonization. ICBO 2021: 122-127 - 2020
- [i2]Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi:
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [j2]Tatsuya Kushida, Kouji Kozaki, Takahiro Kawamura, Yuka Tateisi, Yasunori Yamamoto, Toshihisa Takagi:
Interconnection of Biological Knowledge Using NikkajiRDF and Interlinking Ontology for Biological Concepts. New Gener. Comput. 37(4): 525-549 (2019) - [c11]Tatsuya Kushida, Kouji Kozaki, Yasunori Yamamoto, Atsuko Yamaguchi, Takahiro Kawamura, Takako Nakagawa, Yuka Tateisi, Toshihisa Takagi:
Reconstruction of Hierarchical Structures in a Thesaurus-based Ontology through Curation by Domain Experts. ICBO 2019: 1 - [c10]Atsuko Yamaguchi, Tatsuya Kushida, Yasunori Yamamoto, Kouji Kozaki:
Investigating Schema Definitions Using RDFS and OWL 2 for RDF Databases in Life Sciences. JIST (2) 2019: 137-144 - [c9]Kouji Kozaki, Tatsuya Kushida, Yasunori Yamamoto, Toshihisa Takagi:
Building Knowledge Graph Across Different Subdomains Using Interlinking Ontology for Biomedical Concepts. JIST (2) 2019: 182-190 - [i1]Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi:
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019) - 2018
- [j1]Shuichi Kawashima, Toshiaki Katayama, Hideki Hatanaka, Tatsuya Kushida, Toshihisa Takagi:
NBDC RDF portal: a comprehensive repository for semantic data in life sciences. Database J. Biol. Databases Curation 2018: bay123 (2018) - [c8]Tatsuya Kushida, Kouji Kozaki, Takahiro Kawamura, Yuka Tateisi, Yasunori Yamamoto, Toshihisa Takagi:
Inference of Functions, Roles, and Applications of Chemicals Using Linked Open Data and Ontologies. JIST 2018: 385-397 - 2017
- [c7]Tatsuya Kushida, Kouji Kozaki, Yuka Tateisi, Katsutaro Watanabe, Takeshi Masuda, Katsuji Matsumura, Takahiro Kawamura, Toshihisa Takagi:
Efficient Construction of a New Ontology for Life Sciences by Sub-classifying Related Terms in the Japan Science, Technology Agency Thesaurus. ICBO 2017 - [c6]Tatsuya Kushida, Yuka Tateisi, Takeshi Masuda, Katsutaro Watanabe, Katsuji Matsumura, Takahiro Kawamura, Kouji Kozaki, Toshihisa Takagi:
Refined JST Thesaurus Extended with Data from Other Open Life Science Data Sources. JIST 2017: 35-48 - 2016
- [c5]Takahiro Kawamura, Kouji Kozaki, Tatsuya Kushida, Katsutaro Watanabe, Katsuji Matsumura:
Expanding Science and Technology Thesauri from Bibliographic Datasets Using Word Embedding. ICTAI 2016: 857-864 - 2015
- [c4]Takahiro Kimura, Takahiro Kawamura, Katsutaro Watanabe, Naoya Matsumoto, Tomonori Sato, Tatsuya Kushida, Katsuji Matsumura:
J-GLOBAL knowledge: Japan's Largest Linked Open Data for Science and Technology. ISWC (Posters & Demos) 2015 - 2011
- [c3]Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi:
An Advanced Strategy for Integration of Biological Measurement Data. ICBO 2011
2000 – 2009
- 2009
- [c2]Tatsuya Kushida, Takao Asanuma, Yoshihiro Okuda, Yo Shidahara, Toshihisa Takagi:
Collection of Disease Networks by Hybrid Curation Method and the Application for Pathway Analysis. CISIS 2009: 800-806 - 2006
- [c1]Tatsuya Kushida, Toshihisa Takagi, Ken-ichiro Fukuda:
Event Ontology: A Pathway-Centric Ontology for Biological Processes. Pacific Symposium on Biocomputing 2006: 152-163
Coauthor Index
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