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ORCIDOya Deniz Beyan
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- affiliation: National University of Ireland Galway, Ireland
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2020 – today
- 2023
[i11]Md. Rezaul Karim, Lina Molinas Comet, Oya Beyan, Dietrich Rebholz-Schuhmann, Stefan Decker:
A Biomedical Knowledge Graph for Biomarker Discovery in Cancer. CoRR abs/2302.04737 (2023)- [i10]Zeyd Boukhers, Christoph Lange, Oya Beyan:
Enhancing Data Space Semantic Interoperability through Machine Learning: a Visionary Perspective. CoRR abs/2303.08932 (2023) - 2022
- [j13]Md. Rezaul Karim
, Michael Cochez, Achille Zappa, Ratnesh Sahay, Dietrich Rebholz-Schuhmann, Oya Beyan, Stefan Decker:
Convolutional Embedded Networks for Population Scale Clustering and Bio-Ancestry Inferencing. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 369-382 (2022) - [i9]Md. Rezaul Karim, Tanhim Islam, Oya Beyan, Christoph Lange, Michael Cochez, Dietrich Rebholz-Schuhmann, Stefan Decker:
Explainable AI for Bioinformatics: Methods, Tools, and Applications. CoRR abs/2212.13261 (2022) - 2021
- [j12]Md. Rezaul Karim, Jiao Jiao, Till Döhmen, Michael Cochez, Oya Beyan, Dietrich Rebholz-Schuhmann, Stefan Decker:
DeepKneeExplainer: Explainable Knee Osteoarthritis Diagnosis From Radiographs and Magnetic Resonance Imaging. IEEE Access 9: 39757-39780 (2021) - [j11]Md. Rezaul Karim, Oya Beyan, Achille Zappa, Ivan G. Costa, Dietrich Rebholz-Schuhmann, Michael Cochez, Stefan Decker:
Deep learning-based clustering approaches for bioinformatics. Briefings Bioinform. 22(1): 393-415 (2021) - [j10]Sascha Welten, Laurenz Neumann, Yeliz Ucer Yediel, Luiz Olavo Bonino da Silva Santos, Stefan Decker, Oya Beyan:
DAMS: A Distributed Analytics Metadata Schema. Data Intell. 3(4): 528-547 (2021) - [c18]Alicia Martinez-García, Giorgio Cangioli, Catherine Chronaki, Matthias Löbe, Oya Beyan, Anthony Juehne, Carlos Luis Parra Calderón:
FAIRness for FHIR: Towards Making Health Datasets FAIR Using HL7 FHIR. MedInfo 2021: 22-26 - [c17]Yongli Mou, Sascha Welten, Mehrshad Jaberansary, Yeliz Ucer Yediel, Toralf Kirsten, Stefan Decker, Oya Beyan:
Distributed Skin Lesion Analysis Across Decentralised Data Sources. MIE 2021: 352-356 - [c16]Yongli Mou, Jiahui Geng, Sascha Welten, Chunming Rong, Stefan Decker, Oya Beyan:
Optimized Federated Learning on Class-Biased Distributed Data Sources. PKDD/ECML Workshops (1) 2021: 146-158 - [i8]Yongli Mou, Sascha Welten, Yeliz Ucer Yediel, Toralf Kirsten, Oya Deniz Beyan:
Distributed Learning for Melanoma Classification using Personal Health Train. CoRR abs/2103.13226 (2021) - [i7]Jiahui Geng, Yongli Mou, Feifei Li, Qing Li, Oya Beyan, Stefan Decker, Chunming Rong:
Towards General Deep Leakage in Federated Learning. CoRR abs/2110.09074 (2021) - 2020
- [j9]Lars Christoph Gleim, Md. Rezaul Karim, Lukas Zimmermann, Oliver Kohlbacher, Holger Stenzhorn, Stefan Decker, Oya Beyan:
Enabling ad-hoc reuse of private data repositories through schema extraction. J. Biomed. Semant. 11(1): 6 (2020) - [j8]Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker:
Distributed Analytics on Sensitive Medical Data: The Personal Health Train. Data Intell. 2(1-2): 96-107 (2020) - [j7]Peter McQuilton, Dominique Batista, Oya Beyan, Ramón Granell, Simon J. Coles, Massimiliano Izzo, Allyson L. Lister, Robert Pergl, Philippe Rocca-Serra, Ben Schaap, Hugh P. Shanahan, Milo Thurston, Susanna-Assunta Sansone:
Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data. Data Intell. 2(1-2): 151-157 (2020) - [j6]Md. Rezaul Karim, Ashiqur Rahman, Joao Bosco Jares, Stefan Decker, Oya Beyan:
A snapshot neural ensemble method for cancer-type prediction based on copy number variations. Neural Comput. Appl. 32(19): 15281-15299 (2020) - [c15]Md. Rezaul Karim, Till Döhmen, Michael Cochez, Oya Beyan, Dietrich Rebholz-Schuhmann, Stefan Decker:
DeepCOVIDExplainer: Explainable COVID-19 Diagnosis from Chest X-ray Images. BIBM 2020: 1034-1037 - [i6]Md. Rezaul Karim, Till Döhmen, Dietrich Rebholz-Schuhmann, Stefan Decker, Michael Cochez, Oya Beyan:
DeepCOVIDExplainer: Explainable COVID-19 Predictions Based on Chest X-ray Images. CoRR abs/2004.04582 (2020) - [i5]Dinh-An Ho, Oya Beyan:
Biases in Data Science Lifecycle. CoRR abs/2009.09795 (2020)
2010 – 2019
- 2019
- [j5]Md. Rezaul Karim, Galih Wicaksono, Ivan G. Costa, Stefan Decker, Oya Beyan:
Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data. IEEE Access 7: 133850-133864 (2019) - [c14]Md. Rezaul Karim, Michael Cochez, Joao Bosco Jares, Mamtaz Uddin, Oya Deniz Beyan, Stefan Decker:
Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network. BCB 2019: 113-123 - [c13]Md. Rezaul Karim, Michael Cochez, Oya Beyan, Stefan Decker, Christoph Lange:
OncoNetExplainer: Explainable Predictions of Cancer Types Based on Gene Expression Data. BIBE 2019: 415-422 - [c12]Binh-Phi Nguyen, Thomas J. Reese, Stefan Decker, Daniel C. Malone, Richard D. Boyce, Oya Beyan:
Implementation of Clinical Decision Support Services to Detect Potential Drug-Drug Interaction Using Clinical Quality Language. MedInfo 2019: 724-728 - [c11]Matthias Löbe, Oya Beyan, Sebastian Stäubert, Frank A. Meineke, Danny Ammon, Alfred Winter, Stefan Decker, Markus Löffler, Toralf Kirsten:
Design of Metadata Services for Clinical Data Interoperability in Germany. MedInfo 2019: 1528-1529 - [i4]Md. Rezaul Karim, Michael Cochez, Joao Bosco Jares, Mamtaz Uddin, Oya Deniz Beyan, Stefan Decker:
Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network. CoRR abs/1908.01288 (2019) - [i3]Md. Rezaul Karim, Michael Cochez, Oya Deniz Beyan, Stefan Decker, Christoph Lange:
OncoNetExplainer: Explainable Predictions of Cancer Types Based on Gene Expression Data. CoRR abs/1909.04169 (2019) - 2018
- [j4]Md. Rezaul Karim, Michael Cochez, Oya Deniz Beyan, Chowdhury Farhan Ahmed, Stefan Decker:
Mining maximal frequent patterns in transactional databases and dynamic data streams: A spark-based approach. Inf. Sci. 432: 278-300 (2018) - [c10]Md. Rezaul Karim, Binh-Phi Nguyen, Lukas Zimmermann, Toralf Kirsten, Matthias Löbe, Frank A. Meineke, Holger Stenzhorn, Oliver Kohlbacher, Stefan Decker, Oya Deniz Beyan:
A distributed analytics platform to execute FHIR based phenotyping algorithms. SWAT4LS 2018 - [e1]Andra Waagmeester, Christopher J. O. Baker, Andrea Splendiani, Oya Deniz Beyan, M. Scott Marshall:
Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, SWAT4LS 2018, Antwerp, Belgium, December 3-6, 2018. CEUR Workshop Proceedings 2275, CEUR-WS.org 2018 [contents] - [i2]Oya Deniz Beyan, Andrea Wuchner, Dirk Eisengräber-Pabst, Christoph Quix, Christian Zaschke, Oliver Schumacher:
Research Data in the Fraunhofer Digital Project: Creating a FAIR Research Data Infrastructure and Culture. RO 2018 - [i1]Md. Rezaul Karim, Michael Cochez, Oya Deniz Beyan, Achille Zappa, Ratnesh Sahay, Stefan Decker, Dietrich Rebholz-Schuhmann:
Recurrent Deep Embedding Networks for Genotype Clustering and Ethnicity Prediction. CoRR abs/1805.12218 (2018) - 2017
- [c9]Md. Rezaul Karim, Matthias Heinrichs, Lars Christoph Gleim, Michael Cochez, Emily Porter, Alessandra La Gioia, Saqib Salahuddin, Stefan Decker, Martin O'Halloran, Oya Deniz Beyan:
Towards a FAIR Sharing of Scientific Experiments: Improving Discoverability and Reusability of Dielectric Measurements of Biological Tissues. SWAT4LS 2017 - 2016
- [j3]Christophe Debruyne, Oya Deniz Beyan, Rebecca Grant, Sandra Collins, Stefan Decker, Natalie Harrower:
A semantic architecture for preserving and interpreting the information contained in Irish historical vital records. Int. J. Digit. Libr. 17(3): 159-174 (2016) - [c8]Oya Deniz Beyan, Siegfried Handschuh, Adamantios Koumpis, Garyfallos Fragidis, Stefan Decker:
A Framework for Applying Data Integration and Curation Pipelines to Support Integration of Migrants and Refugees in Europe. PRO-VE 2016: 588-596 - [c7]Oya Deniz Beyan, Stefan Decker:
An RDF Based Semantic Approach to Model Temporal Relations in Health Records. SWAT4LS 2016 - 2015
- [j2]Heike Felzmann, Timur Beyan, Mark Ryan, Oya Deniz Beyan:
Implementing an ethical approach to big data analytics in assistive robotics for elderly with dementia. SIGCAS Comput. Soc. 45(3): 280-286 (2015) - [c6]Christophe Debruyne, Oya Deniz Beyan, Rebecca Grant, Sandra Collins, Stefan Decker:
On a Linked Data Platform for Irish Historical Vital Records. TPDL 2015: 99-110 - [c5]Oya Deniz Beyan, P. J. Mealy, Dolores Grant, Rebecca Grant, Natalie Harrower, Ciara Breathnach, Sandra Collins, Stefan Decker:
Historical Data Preservation and Interpretation Pipeline for Irish Civil Registration Records. OTM Workshops 2015: 466-475 - 2014
- [c4]Laleh Kazemzadeh, Maulik R. Kamdar, Oya Deniz Beyan, Stefan Decker, Frank Barry:
LinkedPPI: Enabling Intuitive, Integrative Protein-Protein Interaction Discovery. LISC@ISWC 2014: 48-59 - 2013
- [c3]Oya Deniz Beyan, Aftab Iqbal, Yasar Khan, Athos Antoniades, John A. Keane, Panagiotis Hasapis, Christos Georgousopoulos, Myrto Ioannidi, Stefan Decker, Ratnesh Sahay:
Querying phenotype-genotype associations across multiple knowledge bases using Semantic Web technologies. BIBE 2013: 1-5 - [c2]Ratnesh Sahay, Dimitrios Ntalaperas, Eleni Kamateri, Panagiotis Hasapis, Oya Deniz Beyan, Marie-Pierre F. Strippoli, Christiana Demetriou, Thomai Gklarou-Stavropoulou, Mathias Brochhausen, Konstantinos A. Tarabanis, Thanassis Bouras, David Tian, Aristos Aristodimou, Athos Antoniades, Christos Georgousopoulos, Manfred Hauswirth, Stefan Decker:
An Ontology for Clinical Trial Data Integration. SMC 2013: 3244-3250 - [c1]Konstantinos Perakis, Thanassis Bouras, Dimitrios Ntalaperas, Panagiotis Hasapis, Christos Georgousopoulos, Ratnesh Sahay, Oya Deniz Beyan, Cristi Potlog, Daniela Usurelu:
Advancing Patient Record Safety and EHR Semantic Interoperability. SMC 2013: 3251-3257 - 2012
- [j1]Oya Deniz Beyan, Nazife Baykal:
A Knowledge Based Search Tool for Performance Measures in Health Care Systems. J. Medical Syst. 36(1): 201-221 (2012) - 2010
- [b1]Oya Deniz Beyan:
A new ontology and knowledge base system for performance measurement in health care ; Sağlık bakımında performans ölçümü için yeni bir ontoloji ve bilgi tabanı sistemi. Middle East Technical University, Çankaya, Ankara, Turkey, 2010
Coauthor Index
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last updated on 2023-03-25 00:52 CET by the dblp team
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