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2020 – today
- 2021
[j34]Hao-Dong Xu, Peilin Jia, Zhongming Zhao
:
Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning. Briefings Bioinform. 22(3) (2021)- [j33]Peilin Jia, Astrid Marilyn Manuel, Brisa S. Fernandes, Yulin Dai, Zhongming Zhao:
Distinct effect of prenatal and postnatal brain expression across 20 brain disorders and anthropometric social traits: a systematic study of spatiotemporal modularity. Briefings Bioinform. 22(6) (2021) - [j32]Ruifeng Hu, Hao-Dong Xu, Peilin Jia, Zhongming Zhao:
KinaseMD: kinase mutations and drug response database. Nucleic Acids Res. 49(Database-Issue): D552-D561 (2021) - [j31]Yulin Dai, Ruifeng Hu, Astrid Marilyn Manuel, Andi Liu, Peilin Jia, Zhongming Zhao:
CSEA-DB: an omnibus for human complex trait and cell type associations. Nucleic Acids Res. 49(Database-Issue): D862-D870 (2021) - 2020
- [j30]Aimin Li, Peilin Jia, Saurav Mallik, Rong Fei, Hiroki Yoshioka, Akiko Suzuki, Junichi Iwata, Zhongming Zhao:
Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA-TF-gene network approach in humans and mice. Briefings Bioinform. 21(4): 1465-1478 (2020) - [j29]Hao-Dong Xu, Ruifeng Hu, Peilin Jia, Zhongming Zhao:
6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes. Bioinform. 36(10): 3257-3259 (2020) - [j28]Peilin Jia, Yulin Dai, Ruifeng Hu, Guangsheng Pei, Astrid Marilyn Manuel, Zhongming Zhao:
TSEA-DB: a trait?tissue association map for human complex traits and diseases. Nucleic Acids Res. 48(Database-Issue): D1022-D1030 (2020) - [j27]Deyou Tang, Bingrui Li, Tianyi Xu, Ruifeng Hu, Daqiang Tan, Xiaofeng Song, Peilin Jia, Zhongming Zhao:
VISDB: a manually curated database of viral integration sites in the human genome. Nucleic Acids Res. 48(Database-Issue): D633-D641 (2020)
2010 – 2019
- 2019
- [j26]Jessica D. Tenenbaum, Krithika Bhuvaneshwar, Jane P. Gagliardi, Kate Fultz Hollis, Peilin Jia, Liang Ma, Radhakrishnan Nagarajan, Gopalkumar Rakesh, Vignesh Subbian, Shyam Visweswaran, Zhongming Zhao, Leon Rozenblit:
Translational bioinformatics in mental health: open access data sources and computational biomarker discovery. Briefings Bioinform. 20(3): 842-856 (2019) - [j25]Hua Sun, Pora Kim, Peilin Jia, Aekyung Park, Han Liang, Zhongming Zhao:
Distinct telomere length and molecular signatures in seminoma and non-seminoma of testicular germ cell tumor. Briefings Bioinform. 20(4): 1502-1512 (2019) - [j24]Guangsheng Pei, Yulin Dai, Zhongming Zhao, Peilin Jia:
deTS: tissue-specific enrichment analysis to decode tissue specificity. Bioinform. 35(19): 3842-3845 (2019) - [j23]Peilin Jia, Guangsheng Pei, Zhongming Zhao:
CNet: a multi-omics approach to detecting clinically associated, combinatory genomic signatures. Bioinform. 35(24): 5207-5215 (2019) - 2018
- [j22]Pora Kim, Peilin Jia, Zhongming Zhao:
Kinase impact assessment in the landscape of fusion genes that retain kinase domains: a pan-cancer study. Briefings Bioinform. 19(3): 450-460 (2018) - [j21]Ruifeng Hu, Yulin Dai, Peilin Jia, Zhongming Zhao:
ANCO-GeneDB: annotations and comprehensive analysis of candidate genes for alcohol, nicotine, cocaine and opioid dependence. Database J. Biol. Databases Curation 2018: bay121 (2018) - [j20]Pora Kim, Aekyung Park, Guangchun Han, Hua Sun, Peilin Jia, Zhongming Zhao:
TissGDB: tissue-specific gene database in cancer. Nucleic Acids Res. 46(Database-Issue): D1031-D1038 (2018) - 2017
- [j19]Peilin Jia, Zhongming Zhao:
Impacts of somatic mutations on gene expression: an association perspective. Briefings Bioinform. 18(3): 413-425 (2017) - [j18]Peilin Jia, Guangchun Han, Junfei Zhao, Pinyi Lu, Zhongming Zhao:
SZGR 2.0: a one-stop shop of schizophrenia candidate genes. Nucleic Acids Res. 45(Database-Issue): D915-D924 (2017) - 2015
- [j17]Quan Wang, Hui Yu, Zhongming Zhao, Peilin Jia:
EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles. Bioinform. 31(15): 2591-2594 (2015) - [j16]Jingchun Sun, Min Zhao, Peilin Jia, Lily Wang, Yonghui Wu, Carissa Iverson, Yubo Zhou, Erica A. Bowton, Dan M. Roden, Joshua C. Denny, Melinda C. Aldrich, Hua Xu, Zhongming Zhao:
Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action. PLoS Comput. Biol. 11(6) (2015) - [j15]Feixiong Cheng, Chuang Liu, Chen-Ching Lin, Junfei Zhao, Peilin Jia, Wen-Hsiung Li, Zhongming Zhao:
A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3, 000 Cancer Genomes across 9 Cancer Types. PLoS Comput. Biol. 11(9) (2015) - 2014
- [j14]Peilin Jia, Zhongming Zhao:
VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data. PLoS Comput. Biol. 10(2) (2014) - 2013
- [j13]Qingguo Wang, Junfeng Xia, Peilin Jia, William Pao, Zhongming Zhao:
Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives. Briefings Bioinform. 14(4): 506-519 (2013) - [j12]Min Zhao, Qingguo Wang, Quan Wang, Peilin Jia, Zhongming Zhao:
Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives. BMC Bioinform. 14(S-11): S1 (2013) - [c5]Peilin Jia, Zhongming Zhao:
Network-based mutation analysis of putative cancer genes from next-generation sequencing data. BIBM 2013: 41 - 2012
- [j11]Peilin Jia, Yang Liu, Zhongming Zhao:
Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer. BMC Syst. Biol. 6(S-3): S13 (2012) - [j10]Peilin Jia, Lily Wang, Ayman H. Fanous, Carlos N. Pato, Todd L. Edwards, Zhongming Zhao:
Network-Assisted Investigation of Combined Causal Signals from Genome-Wide Association Studies in Schizophrenia. PLoS Comput. Biol. 8(7) (2012) - 2011
- [j9]Peilin Jia, Siyuan Zheng, Jirong Long, Wei Zheng, Zhongming Zhao:
dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. Bioinform. 27(1): 95-102 (2011) - [j8]Lily Wang, Peilin Jia, Russell D. Wolfinger, Xi Chen, Britney L. Grayson, Thomas M. Aune, Zhongming Zhao:
An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies. Bioinform. 27(5): 686-692 (2011) - [j7]Peilin Jia, Chung-Feng Kao, Po-Hsiu Kuo, Zhongming Zhao:
A comprehensive network and pathway analysis of candidate genes in major depressive disorder. BMC Syst. Biol. 5(S-3): S12 (2011) - [j6]Junfeng Xia, Jingchun Sun, Peilin Jia, Zhongming Zhao:
Do cancer proteins really interact strongly in the human protein-protein interaction network? Comput. Biol. Chem. 35(3): 121-125 (2011) - [c4]Peilin Jia, Zhongming Zhao:
Network-assisted causal gene detection in genome-wide association studies: an improved module search algorithm. GENSiPS 2011: 131-134 - 2010
- [j5]Peilin Jia, Zhongming Zhao:
Pathway- and network-based analysis of GWAS data revealed susceptibility gene sets to schizophrenia. BMC Bioinform. 11(S-4): O1 (2010) - [j4]An-Yuan Guo, Jingchun Sun, Peilin Jia, Zhongming Zhao:
A Novel microRNA and transcription factor mediated regulatory network in schizophrenia. BMC Syst. Biol. 4: 10 (2010) - [j3]Peilin Jia, Jian Tian, Zhongming Zhao:
Assessing gene length biases in gene set analysis of Genome-Wide Association Studies. Int. J. Comput. Biol. Drug Des. 3(4): 297-310 (2010) - [c3]Xue Gong, Peilin Jia, Zhongming Zhao:
Investigating microRNA-transcription factor mediated regulatory network in glioblastoma. BIBM Workshops 2010: 258-263
2000 – 2009
- 2009
- [j2]Jingchun Sun, Peilin Jia, Ayman H. Fanous, Bradley Todd Webb, Edwin J. C. G. van den Oord, Xiangning Chen, József Bukszár, Kenneth S. Kendler, Zhongming Zhao:
A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases-schizophrenia as a case. Bioinform. 25(19): 2595-2602 (2009) - [c2]Jingchun Sun, Peilin Jia, Zhongming Zhao:
Global Network Features of Cancer Genes in the Human Interactome. IJCBS 2009: 412-416 - [c1]Peilin Jia, Jingchun Sun, Leng Han, Zhongming Zhao:
Pathway and Network Analysis of Schizophrenia Candidate Genes under Meta-Analysis Linkage Peaks. IJCBS 2009: 442-447 - 2006
- [j1]Peilin Jia, Tieliu Shi, Yudong Cai, Yixue Li:
Demonstration of two novel methods for predicting functional siRNA efficiency. BMC Bioinform. 7: 271 (2006)
Coauthor Index
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