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2020 – today
- 2023
[j39]Jie Lian
, Xiaohan Wang, Dong Wang, Peilin Jia:
Multiobjective Optimization of Networked Switched Systems Subject to DoS Attack Using Artificial Bee Colony Algorithm. IEEE Trans. Control. Netw. Syst. 10(1): 100-111 (2023)- 2022
- [j38]Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Jingyao Zeng, Yadong Zhang, Yunfei Shang, Jialin Mai, Shuo Shi, Mingming Lu, Congfan Bu, Zhewen Zhang, Zhenglin Du, Yinying Wang, Hongen Kang, Tianyi Xu, Lili Hao, Peilin Jia, Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Tong Jin, Yuansheng Zhang, Dong Zou, Qiang Du, Changrui Feng, Lina Ma, Sisi Zhang, Anke Wang, Lili Dong, Yanqing Wang, Wan Liu, Xing Yan, Yunchao Ling, Zhihua Zhou, Wang Kang, Tao Zhang, Shuai Ma, Haoteng Yan, Zunpeng Liu, Zejun Ji, Yusheng Cai, Si Wang, Moshi Song, Jie Ren, Qi Zhou, Jing Qu, Weiqi Zhang, Guanghui Liu, Xu Chen, Tingting Chen, Yanling Sun, Caixia Yu, Bixia Tang, Junwei Zhu, Shuang Zhai, Yubin Sun, Qiancheng Chen, Xiaoyu Yang, Xin Zhang, Zhengqi Sang, Yonggang Wang, Yilin Zhao, Huanxin Chen, Li Lan, Yingke Ma, Yaokai Jia, Xinchang Zheng, Meili Chen, Ming Chen, Guangyi Niu, Rong Pan, Wei Jing, Jian Sang, Chang Liu, Yujia Xiong, Mochen Zhang, Guoliang Wang, Lizhi Yi, Wei Zhao, Song Wu, Zhuang Xiong, Rujiao Li, Zheng Gong, Lin Liu, Zhao Li, Qianpeng Li, Sicheng Luo, Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Yanyan Li, Fei Yang, Mengwei Li, Zhaohua Li, Dongmei Tian, Xiaonan Liu, Cuiping Li, Xufei Teng, Shuhui Song, Yang Zhang, Ruru Chen, Rongqin Zhang, Feng Xu, Yifan Wang, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yungang He, Zhen Yang, Lun Li, Na Li, Ying Cui, Guangya Duan, Gangao Wu, Tianhao Huang, Enhui Jin, Hailong Kang, Zhonghuang Wang, Hua Chen, Mingkun Li, Wanshan Ning, Yu Xue, Yanhu Liu, Qijun Zhou, Xingyan Liu, Longlong Zhang, Bingyu Mao, Shihua Zhang, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Haichun Jing, Yitong Pan, Leisheng Shi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Dan Liu, Chi Zhang, Zheng Zhao, Tao Jiang, Wanying Wu, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Shaofeng Lin, Chuijie Liu, Anyuan Guo, Hao Yuan, Tianhan Su, Yong E. Zhang, Yincong Zhou, Guoji Guo, Shanshan Fu, Xiaodan Tan, Weizhi Zhang, Mei Luo, Yubin Xie, Chenwei Wang, Xingyu Liao, Xin Gao, Jianxin Wang, Guiyan Xie, Chunhui Yuan, Feng Tian, Dechang Yang, Ge Gao, Dachao Tang, Wenyi Wu, Yujie Gou, Cheng Han, Qinghua Cui, Xiangshang Li, Chuan-Yun Li, Xiaotong Luo:
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. Nucleic Acids Res. 50(D1): 27-38 (2022) - [j37]Yin-Ying Wang, Hongen Kang, Tianyi Xu, Lili Hao, Yiming Bao, Peilin Jia:
CeDR Atlas: a knowledgebase of cellular drug response. Nucleic Acids Res. 50(D1): 1164-1171 (2022) - [j36]Yulin Dai, Ruifeng Hu, Andi Liu, Kyung Serk Cho, Astrid Marilyn Manuel, Xiaoyang Li, Xianjun Dong, Peilin Jia, Zhongming Zhao:
WebCSEA: web-based cell-type-specific enrichment analysis of genes. Nucleic Acids Res. 50(W1): 782- (2022) - 2021
- [j35]Hao-Dong Xu, Peilin Jia, Zhongming Zhao:
Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning. Briefings Bioinform. 22(3) (2021) - [j34]Peilin Jia, Astrid Marilyn Manuel, Brisa S. Fernandes, Yulin Dai, Zhongming Zhao:
Distinct effect of prenatal and postnatal brain expression across 20 brain disorders and anthropometric social traits: a systematic study of spatiotemporal modularity. Briefings Bioinform. 22(6) (2021) - [j33]Ruifeng Hu, Hao-Dong Xu, Peilin Jia, Zhongming Zhao:
KinaseMD: kinase mutations and drug response database. Nucleic Acids Res. 49(Database-Issue): D552-D561 (2021) - [j32]Yulin Dai, Ruifeng Hu, Astrid Marilyn Manuel, Andi Liu, Peilin Jia, Zhongming Zhao:
CSEA-DB: an omnibus for human complex trait and cell type associations. Nucleic Acids Res. 49(Database-Issue): D862-D870 (2021) - [j31]Guangsheng Pei, Ruifeng Hu, Peilin Jia, Zhongming Zhao:
DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner. Nucleic Acids Res. 49(Webserver-Issue): 131-139 (2021) - 2020
- [j30]Aimin Li, Peilin Jia, Saurav Mallik, Rong Fei, Hiroki Yoshioka, Akiko Suzuki, Junichi Iwata, Zhongming Zhao:
Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA-TF-gene network approach in humans and mice. Briefings Bioinform. 21(4): 1465-1478 (2020) - [j29]Hao-Dong Xu, Ruifeng Hu, Peilin Jia, Zhongming Zhao:
6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes. Bioinform. 36(10): 3257-3259 (2020) - [j28]Peilin Jia, Yulin Dai, Ruifeng Hu, Guangsheng Pei, Astrid Marilyn Manuel, Zhongming Zhao:
TSEA-DB: a trait?tissue association map for human complex traits and diseases. Nucleic Acids Res. 48(Database-Issue): D1022-D1030 (2020) - [j27]Deyou Tang, Bingrui Li, Tianyi Xu, Ruifeng Hu, Daqiang Tan, Xiaofeng Song, Peilin Jia, Zhongming Zhao:
VISDB: a manually curated database of viral integration sites in the human genome. Nucleic Acids Res. 48(Database-Issue): D633-D641 (2020)
2010 – 2019
- 2019
- [j26]Jessica D. Tenenbaum, Krithika Bhuvaneshwar, Jane P. Gagliardi, Kate Fultz Hollis, Peilin Jia, Liang Ma, Radhakrishnan Nagarajan, Gopalkumar Rakesh, Vignesh Subbian, Shyam Visweswaran, Zhongming Zhao, Leon Rozenblit:
Translational bioinformatics in mental health: open access data sources and computational biomarker discovery. Briefings Bioinform. 20(3): 842-856 (2019) - [j25]Hua Sun, Pora Kim, Peilin Jia, Aekyung Park, Han Liang, Zhongming Zhao:
Distinct telomere length and molecular signatures in seminoma and non-seminoma of testicular germ cell tumor. Briefings Bioinform. 20(4): 1502-1512 (2019) - [j24]Guangsheng Pei, Yulin Dai, Zhongming Zhao, Peilin Jia:
deTS: tissue-specific enrichment analysis to decode tissue specificity. Bioinform. 35(19): 3842-3845 (2019) - [j23]Peilin Jia, Guangsheng Pei, Zhongming Zhao:
CNet: a multi-omics approach to detecting clinically associated, combinatory genomic signatures. Bioinform. 35(24): 5207-5215 (2019) - 2018
- [j22]Pora Kim, Peilin Jia, Zhongming Zhao:
Kinase impact assessment in the landscape of fusion genes that retain kinase domains: a pan-cancer study. Briefings Bioinform. 19(3): 450-460 (2018) - [j21]Ruifeng Hu, Yulin Dai, Peilin Jia, Zhongming Zhao:
ANCO-GeneDB: annotations and comprehensive analysis of candidate genes for alcohol, nicotine, cocaine and opioid dependence. Database J. Biol. Databases Curation 2018: bay121 (2018) - [j20]Pora Kim, Aekyung Park, Guangchun Han, Hua Sun, Peilin Jia, Zhongming Zhao:
TissGDB: tissue-specific gene database in cancer. Nucleic Acids Res. 46(Database-Issue): D1031-D1038 (2018) - 2017
- [j19]Peilin Jia, Zhongming Zhao:
Impacts of somatic mutations on gene expression: an association perspective. Briefings Bioinform. 18(3): 413-425 (2017) - [j18]Peilin Jia, Guangchun Han, Junfei Zhao, Pinyi Lu, Zhongming Zhao:
SZGR 2.0: a one-stop shop of schizophrenia candidate genes. Nucleic Acids Res. 45(Database-Issue): D915-D924 (2017) - 2015
- [j17]Quan Wang, Hui Yu, Zhongming Zhao, Peilin Jia:
EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles. Bioinform. 31(15): 2591-2594 (2015) - [j16]Jingchun Sun, Min Zhao, Peilin Jia, Lily Wang, Yonghui Wu, Carissa Iverson, Yubo Zhou, Erica A. Bowton, Dan M. Roden, Joshua C. Denny, Melinda C. Aldrich, Hua Xu, Zhongming Zhao:
Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action. PLoS Comput. Biol. 11(6) (2015) - [j15]Feixiong Cheng, Chuang Liu, Chen-Ching Lin, Junfei Zhao, Peilin Jia, Wen-Hsiung Li, Zhongming Zhao:
A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3, 000 Cancer Genomes across 9 Cancer Types. PLoS Comput. Biol. 11(9) (2015) - 2014
- [j14]Peilin Jia, Zhongming Zhao:
VarWalker: Personalized Mutation Network Analysis of Putative Cancer Genes from Next-Generation Sequencing Data. PLoS Comput. Biol. 10(2) (2014) - 2013
- [j13]Qingguo Wang, Junfeng Xia, Peilin Jia, William Pao, Zhongming Zhao:
Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives. Briefings Bioinform. 14(4): 506-519 (2013) - [j12]Min Zhao, Qingguo Wang, Quan Wang, Peilin Jia, Zhongming Zhao:
Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives. BMC Bioinform. 14(S-11): S1 (2013) - [c5]Peilin Jia, Zhongming Zhao:
Network-based mutation analysis of putative cancer genes from next-generation sequencing data. BIBM 2013: 41 - 2012
- [j11]Peilin Jia, Yang Liu, Zhongming Zhao:
Integrative pathway analysis of genome-wide association studies and gene expression data in prostate cancer. BMC Syst. Biol. 6(S-3): S13 (2012) - [j10]Peilin Jia, Lily Wang, Ayman H. Fanous, Carlos N. Pato, Todd L. Edwards, Zhongming Zhao:
Network-Assisted Investigation of Combined Causal Signals from Genome-Wide Association Studies in Schizophrenia. PLoS Comput. Biol. 8(7) (2012) - 2011
- [j9]Peilin Jia, Siyuan Zheng, Jirong Long, Wei Zheng, Zhongming Zhao:
dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. Bioinform. 27(1): 95-102 (2011) - [j8]Lily Wang, Peilin Jia, Russell D. Wolfinger, Xi Chen, Britney L. Grayson, Thomas M. Aune, Zhongming Zhao:
An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies. Bioinform. 27(5): 686-692 (2011) - [j7]Peilin Jia, Chung-Feng Kao, Po-Hsiu Kuo, Zhongming Zhao:
A comprehensive network and pathway analysis of candidate genes in major depressive disorder. BMC Syst. Biol. 5(S-3): S12 (2011) - [j6]Junfeng Xia, Jingchun Sun, Peilin Jia, Zhongming Zhao:
Do cancer proteins really interact strongly in the human protein-protein interaction network? Comput. Biol. Chem. 35(3): 121-125 (2011) - [c4]Peilin Jia, Zhongming Zhao:
Network-assisted causal gene detection in genome-wide association studies: an improved module search algorithm. GENSiPS 2011: 131-134 - 2010
- [j5]Peilin Jia, Zhongming Zhao:
Pathway- and network-based analysis of GWAS data revealed susceptibility gene sets to schizophrenia. BMC Bioinform. 11(S-4): O1 (2010) - [j4]An-Yuan Guo, Jingchun Sun, Peilin Jia, Zhongming Zhao:
A Novel microRNA and transcription factor mediated regulatory network in schizophrenia. BMC Syst. Biol. 4: 10 (2010) - [j3]Peilin Jia, Jian Tian, Zhongming Zhao:
Assessing gene length biases in gene set analysis of Genome-Wide Association Studies. Int. J. Comput. Biol. Drug Des. 3(4): 297-310 (2010) - [c3]Xue Gong, Peilin Jia, Zhongming Zhao:
Investigating microRNA-transcription factor mediated regulatory network in glioblastoma. BIBM Workshops 2010: 258-263
2000 – 2009
- 2009
- [j2]Jingchun Sun, Peilin Jia, Ayman H. Fanous, Bradley Todd Webb, Edwin J. C. G. van den Oord, Xiangning Chen, József Bukszár, Kenneth S. Kendler, Zhongming Zhao:
A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases-schizophrenia as a case. Bioinform. 25(19): 2595-2602 (2009) - [c2]Jingchun Sun, Peilin Jia, Zhongming Zhao:
Global Network Features of Cancer Genes in the Human Interactome. IJCBS 2009: 412-416 - [c1]Peilin Jia, Jingchun Sun, Leng Han, Zhongming Zhao:
Pathway and Network Analysis of Schizophrenia Candidate Genes under Meta-Analysis Linkage Peaks. IJCBS 2009: 442-447 - 2006
- [j1]Peilin Jia, Tieliu Shi, Yudong Cai, Yixue Li:
Demonstration of two novel methods for predicting functional siRNA efficiency. BMC Bioinform. 7: 271 (2006)
Coauthor Index
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