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Thomas Lengauer
Person information
- affiliation: University Hospital Cologne, Germany
- affiliation (former): Max-Planck-Institut for Informatics, Saarbrücken, Germany
- award (2003): Konrad Zuse Medal
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2020 – today
- 2023
- [i3]Giulia Di Teodoro, Martin Pirkl, Francesca Incardona, Ilaria Vicenti, Anders Sönnerborg, Rolf Kaiser, Laura Palagi, Maurizio Zazzi, Thomas Lengauer:
Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1. CoRR abs/2311.04846 (2023)
2010 – 2019
- 2018
- [j123]Matthias Döring
, Joachim Büch, Georg Friedrich, Alejandro Pironti, Prabhav Kalaghatgi, Elena Knops, Eva Heger, Martin Obermeier, Martin Däumer, Alexander Thielen, Rolf Kaiser, Thomas Lengauer
, Nico Pfeifer:
geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data. Nucleic Acids Res. 46(Webserver-Issue): W271-W277 (2018) - 2017
- [j122]Felipe Albrecht, Markus List
, Christoph Bock
, Thomas Lengauer
:
DeepBlueR: large-scale epigenomic analysis in R. Bioinform. 33(13): 2063-2064 (2017) - [j121]Bonnie Berger, Terry Gaasterland, Thomas Lengauer
, Christine A. Orengo, Bruno Gaëta, Scott Markel, Alfonso Valencia:
ISCB's initial reaction to New England Journal of Medicine editorial on data sharing. Bioinform. 33(18): 2968 (2017) - [j120]Prabhav Kalaghatgi
, Thomas Lengauer
:
Computing phylogenetic trees using topologically related minimum spanning trees. J. Graph Algorithms Appl. 21(6): 1003-1025 (2017) - [i2]Prabhav Kalaghatgi, Thomas Lengauer:
Selecting optimal minimum spanning trees that share a topological correspondence with phylogenetic trees. CoRR abs/1701.02844 (2017) - 2016
- [j119]Felipe Albrecht
, Markus List
, Christoph Bock
, Thomas Lengauer
:
DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets. Nucleic Acids Res. 44(Webserver-Issue): W581-W586 (2016) - [j118]Bonnie Berger, Terry Gaasterland, Thomas Lengauer
, Christine A. Orengo, Bruno Gaëta, Scott Markel, Alfonso Valencia:
ISCB's Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing. PLoS Comput. Biol. 12(3) (2016) - 2015
- [j117]Peter Ebert
, Fabian Müller
, Karl Nordström
, Thomas Lengauer
, Marcel H. Schulz
:
A general concept for consistent documentation of computational analyses. Database J. Biol. Databases Curation 2015 (2015) - [j116]Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer
, Michal Linial
, Pardis Sabeti, Winston Hide
, Burkhard Rost
:
Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus. Bioinform. 31(4): 616-617 (2015) - [j115]Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer
, Michal Linial
, Pardis Sabeti, Winston Hide
, Burkhard Rost
:
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. PLoS Comput. Biol. 11(1) (2015) - [j114]Thomas Lengauer
, Ruth Nussinov
:
How to Write a Presubmission Inquiry. PLoS Comput. Biol. 11(2) (2015) - 2014
- [j113]Anna Katharina Hildebrandt, Matthias Dietzen, Thomas Lengauer, Hans-Peter Lenhof, Ernst Althaus, Andreas Hildebrandt
:
Efficient computation of root mean square deviations under rigid transformations. J. Comput. Chem. 35(10): 765-771 (2014) - [j112]Mazen Ahmad, Olga V. Kalinina, Thomas Lengauer:
Entropy gain due to water release upon ligand binding. J. Cheminformatics 6(S-1): 35 (2014) - [j111]Matthias Dietzen, Elena Zotenko
, Andreas Hildebrandt
, Thomas Lengauer:
Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 54(12): 3453 (2014) - [j110]Daniel Becker, Pavlo Lutsik
, Peter Ebert
, Christoph Bock
, Thomas Lengauer, Jörn Walter:
BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives. Nucleic Acids Res. 42(Webserver-Issue): 501-507 (2014) - 2013
- [j109]Laura Tolosi, Jessica Theißen, Konstantin Halachev, Barbara Hero, Frank Berthold
, Thomas Lengauer:
A method for finding consensus breakpoints in the cancer genome from copy number data. Bioinform. 29(14): 1793-1800 (2013) - [j108]Katarzyna Bozek, Thomas Lengauer, Saleta Sierra, Rolf Kaiser, Francisco S. Domingues
:
Analysis of Physicochemical and Structural Properties Determining HIV-1 Coreceptor Usage. PLoS Comput. Biol. 9(3) (2013) - [j107]Thomas Lengauer, Ruth Nussinov:
New Methods Section in PLOS Computational Biology. PLoS Comput. Biol. 9(3) (2013) - [j106]Sven-Eric Schelhorn, Matthias Fischer, Laura Tolosi, Janine Altmüller
, Peter Nürnberg, Herbert Pfister, Thomas Lengauer, Frank Berthold
:
Sensitive Detection of Viral Transcripts in Human Tumor Transcriptomes. PLoS Comput. Biol. 9(10) (2013) - 2012
- [j105]Nico Pfeifer
, Thomas Lengauer:
Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data. Bioinform. 28(18): 589-595 (2012) - [j104]Burkhard Rost
, Terry Gaasterland, Thomas Lengauer, Michal Linial
, Scott Markel, B. J. Morrison McKay, Reinhard Schneider
, Paul Horton, Janet Kelso
:
Paving the future: finding suitable ISMB venues. Bioinform. 28(19): 2556-2559 (2012) - [j103]Matthias Dietzen, Elena Zotenko
, Andreas Hildebrandt
, Thomas Lengauer:
On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 52(3): 844-856 (2012) - [c73]Jasmina Bogojeska, Daniel Stöckel, Maurizio Zazzi, Rolf Kaiser, Francesca Incardona, Michal Rosen-Zvi, Thomas Lengauer:
History-alignment models for bias-aware prediction of virological response to HIV combination therapy. AISTATS 2012: 118-126 - 2011
- [j102]Laura Tolosi, Thomas Lengauer:
Classification with correlated features: unreliability of feature ranking and solutions. Bioinform. 27(14): 1986-1994 (2011) - [j101]Martin Däumer, Rolf Kaiser, Rolf Klein, Thomas Lengauer, Bernhard Thiele, Alexander Thielen:
Genotypic tropism testing by massively parallel sequencing: qualitative and quantitative analysis. BMC Medical Informatics Decis. Mak. 11: 30 (2011) - [j100]Pavlo Lutsik
, Lars Feuerbach, Julia Arand
, Thomas Lengauer, Jörn Walter, Christoph Bock
:
BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing. Nucleic Acids Res. 39(Web-Server-Issue): 551-556 (2011) - 2010
- [j99]André Altmann
, Laura Tolosi, Oliver Sander, Thomas Lengauer:
Permutation importance: a corrected feature importance measure. Bioinform. 26(10): 1340-1347 (2010) - [j98]Jasmina Bogojeska
, Steffen Bickel, André Altmann
, Thomas Lengauer:
Dealing with sparse data in predicting outcomes of HIV combination therapies. Bioinform. 26(17): 2085-2092 (2010) - [j97]Andreas Schlicker
, Thomas Lengauer, Mario Albrecht:
Improving disease gene prioritization using the semantic similarity of Gene Ontology terms. Bioinform. 26(18) (2010) - [j96]Kirsten Roomp, Iris Antes, Thomas Lengauer:
Predicting MHC class I epitopes in large datasets. BMC Bioinform. 11: 90 (2010) - [j95]Thomas Lengauer, André Altmann
, Alexander Thielen, Rolf Kaiser:
Chasing the AIDS virus. Commun. ACM 53(3): 66-74 (2010) - [j94]Dorothea Emig, Nathan Salomonis, Jan Baumbach
, Thomas Lengauer, Bruce R. Conklin
, Mario Albrecht:
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Res. 38(Web-Server-Issue): 755-762 (2010)
2000 – 2009
- 2009
- [j93]Hagen Blankenburg
, Robert D. Finn
, Andreas Prlic
, Andrew M. Jenkinson
, Fidel Ramírez, Dorothea Emig, Sven-Eric Schelhorn, Joachim Büch, Thomas Lengauer, Mario Albrecht:
DASMI: exchanging, annotating and assessing molecular interaction data. Bioinform. 25(10): 1321-1328 (2009) - [j92]Thomas Lengauer, André Altmann
, Alexander Thielen:
Bioinformatische Unterstützung der Auswahl von HIV-Therapien. Inform. Spektrum 32(4): 320-331 (2009) - [c72]Juliane Perner, André Altmann, Thomas Lengauer:
Semi-Supervised Learning for Improving Prediction of HIV Drug Resistance. GCB 2009: 55-65 - 2008
- [j91]Christoph Bock
, Thomas Lengauer:
Computational epigenetics. Bioinform. 24(1): 1-10 (2008) - [j90]Yassen Assenov, Fidel Ramírez, Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht:
Computing topological parameters of biological networks. Bioinform. 24(2): 282-284 (2008) - [j89]Jasmina Bogojeska, Adrian Alexa, André Altmann
, Thomas Lengauer, Jörg Rahnenführer
:
Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores. Bioinform. 24(20): 2391-2392 (2008) - [j88]Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht:
Integrating expression data with domain interaction networks. Bioinform. 24(21): 2546-2548 (2008) - [j87]Jasmina Bogojeska
, Thomas Lengauer, Jörg Rahnenführer
:
Stability analysis of mixtures of mutagenetic trees. BMC Bioinform. 9 (2008) - [j86]Dorothea Emig, Melissa S. Cline, Karsten Klein, Anne Kunert, Petra Mutzel
, Thomas Lengauer, Mario Albrecht:
Integrative Visual Analysis of the Effects of Alternative Splicing on Protein Domain Interaction Networks. J. Integr. Bioinform. 5(2) (2008) - [j85]Nils Weinhold, Oliver Sander, Francisco S. Domingues
, Thomas Lengauer, Ingolf Sommer:
Local Function Conservation in Sequence and Structure Space. PLoS Comput. Biol. 4(7) (2008) - [c71]Oliver Sander, Francisco S. Domingues, Hongbo Zhu, Thomas Lengauer, Ingolf Sommer:
Structural Descriptors of Protein-Protein Binding Sites. APBC 2008: 79-88 - [c70]Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht:
An integrative approach for predicting interactions of protein regions. ECCB 2008: 35-41 - [c69]Steffen Bickel, Jasmina Bogojeska
, Thomas Lengauer, Tobias Scheffer:
Multi-task learning for HIV therapy screening. ICML 2008: 56-63 - [c68]Michal Rosen-Zvi
, André Altmann
, Mattia Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Sönnerborg, Eugen Schülter, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi
, Thomas Lengauer:
Selecting anti-HIV therapies based on a variety of genomic and clinical factors. ISMB 2008: 399-406 - [i1]Andreas Schlicker, Fidel Ramírez, Jörg Rahnenführer, Carola Huthmacher, Alejandro Pironti, Francisco S. Domingues, Thomas Lengauer, Mario Albrecht:
Applications of semantic similarity measures. Ontologies and Text Mining for Life Sciences 2008 - 2007
- [j84]Andreas Schlicker
, Carola Huthmacher, Fidel Ramírez, Thomas Lengauer, Mario Albrecht:
Functional evaluation of domain-domain interactions and human protein interaction networks. Bioinform. 23(7): 859-865 (2007) - [j83]Francisco S. Domingues
, Jörg Rahnenführer
, Thomas Lengauer:
Conformational analysis of alternative protein structures. Bioinform. 23(23): 3131-3138 (2007) - [j82]Ingolf Sommer, Oliver Müller, Francisco S. Domingues
, Oliver Sander, Joachim Weickert, Thomas Lengauer:
Moment invariants as shape recognition technique for comparing protein binding sites. Bioinform. 23(23): 3139-3146 (2007) - [j81]Oliver Sander, Tobias Sing, Ingolf Sommer, Andrew J. Low
, Peter K. Cheung, P. Richard Harrigan, Thomas Lengauer, Francisco S. Domingues
:
Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage. PLoS Comput. Biol. 3(3) (2007) - [j80]Thomas Lengauer, B. J. Morrison McKay, Burkhard Rost
:
ISMB/ECCB 2007: The Premier Conference on Computational Biology. PLoS Comput. Biol. 3(5) (2007) - [j79]Christoph Bock
, Jörn Walter, Martina Paulsen, Thomas Lengauer:
CpG Island Mapping by Epigenome Prediction. PLoS Comput. Biol. 3(6) (2007) - 2006
- [j78]Jochen Maydt, Thomas Lengauer:
Recco: recombination analysis using cost optimization. Bioinform. 22(9): 1064-1071 (2006) - [j77]Andrew E. Torda, Thomas Lengauer:
Editorial. Bioinform. 22(10): 1157 (2006) - [j76]Burkhard Heil, Jost Ludwig, Hella Lichtenberg-Fraté, Thomas Lengauer:
Computational recognition of potassium channel sequences. Bioinform. 22(13): 1562-1568 (2006) - [j75]Adrian Alexa, Jörg Rahnenführer
, Thomas Lengauer:
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinform. 22(13): 1600-1607 (2006) - [j74]Oliver Sander, Ingolf Sommer, Thomas Lengauer:
Local protein structure prediction using discriminative models. BMC Bioinform. 7: 14 (2006) - [j73]Hongbo Zhu, Francisco S. Domingues
, Ingolf Sommer, Thomas Lengauer:
NOXclass: prediction of protein-protein interaction types. BMC Bioinform. 7: 27 (2006) - [j72]Andreas Schlicker
, Francisco S. Domingues
, Jörg Rahnenführer
, Thomas Lengauer:
A new measure for functional similarity of gene products based on Gene Ontology. BMC Bioinform. 7: 302 (2006) - [j71]Ingolf Sommer, Stefano Toppo
, Oliver Sander, Thomas Lengauer, Silvio C. E. Tosatto
:
Improving the quality of protein structure models by selecting from alignment alternatives. BMC Bioinform. 7: 364 (2006) - [j70]Dirk Neumann
, Oliver Kohlbacher
, Christian Merkwirth, Thomas Lengauer:
A Fully Computational Model for Predicting Percutaneous Drug Absorption. J. Chem. Inf. Model. 46(1): 424-429 (2006) - [j69]Andreas Kämper
, Joannis Apostolakis, Matthias Rarey
, Christel M. Marian
, Thomas Lengauer:
Fully Automated Flexible Docking of Ligands into Flexible Synthetic Receptors Using Forward and Inverse Docking Strategies. J. Chem. Inf. Model. 46(2): 903-911 (2006) - [j68]Andreas Steffen, Andreas Kämper
, Thomas Lengauer:
Flexible Docking of Ligands into Synthetic Receptors Using a Two-Sided Incremental Construction Algorithm. J. Chem. Inf. Model. 46(4): 1695-1703 (2006) - [c67]Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann
, Rolf Kaiser, Thomas Lengauer, Joachim Selbig:
Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. DILS 2006: 185-194 - [c66]Andreas Schlicker, Carola Huthmacher, Fidel Ramírez, Thomas Lengauer, Mario Albrecht:
Functional Evaluation of Domain-Domain Interactions and Human Protein Interaction Networks. German Conference on Bioinformatics 2006: 115-126 - [c65]Iris Antes, Shirley W. I. Siu, Thomas Lengauer:
DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. ISMB (Supplement of Bioinformatics) 2006: 16-24 - 2005
- [j67]Niko Beerenwinkel, Jörg Rahnenführer
, Rolf Kaiser, Daniel Hoffmann
, Joachim Selbig, Thomas Lengauer:
Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinform. 21(9): 2106-2107 (2005) - [j66]Jörg Rahnenführer
, Niko Beerenwinkel, Wolfgang A. Schulz
, Christian Hartmann
, Andreas von Deimling
, Bernd Wullich, Thomas Lengauer:
Estimating cancer survival and clinical outcome based on genetic tumor progression scores. Bioinform. 21(10): 2438-2446 (2005) - [j65]Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer:
ROCR: visualizing classifier performance in R. Bioinform. 21(20): 3940-3941 (2005) - [j64]Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer
, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann
, Joachim Selbig, Klaus Korn
, Hauke Walter, Thomas Berg
, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer:
Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinform. 21(21): 3943-3950 (2005) - [j63]Christoph Bock
, Sabine Reither
, Thomas Mikeska
, Martina Paulsen, Jörn Walter, Thomas Lengauer:
BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. Bioinform. 21(21): 4067-4068 (2005) - [j62]Andreas Hahn, Jörg Rahnenführer
, Priti Talwar
, Thomas Lengauer:
Confirmation of human protein interaction data by human expression data. BMC Bioinform. 6: 112 (2005) - [j61]Thomas Lengauer:
The DFG Priority Program "Informatics Methods for the Analysis and Interpretation of Large Genomic Datasets". it Inf. Technol. 47(4): 226-231 (2005) - [j60]Niko Beerenwinkel, Jörg Rahnenführer
, Martin Däumer, Daniel Hoffmann
, Rolf Kaiser, Joachim Selbig, Thomas Lengauer:
Learning Multiple Evolutionary Pathways from Cross-Sectional Data. J. Comput. Biol. 12(6): 584-598 (2005) - [j59]Christian Merkwirth, Thomas Lengauer:
Automatic Generation of Complementary Descriptors with Molecular Graph Networks. J. Chem. Inf. Model. 45(5): 1159-1168 (2005) - [j58]Iris Antes, Christian Merkwirth, Thomas Lengauer:
POEM: Parameter Optimization Using Ensemble Methods: Application to Target Specific Scoring Functions. J. Chem. Inf. Model. 45(5): 1291-1302 (2005) - [c64]Mario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto
, Thomas Lengauer:
Decomposing protein networks into domain-domain interactions. ECCB/JBI 2005: 221 - [c63]Tobias Sing, Niko Beerenwinkel, Thomas Lengauer, Valentina Svicher, Francesca Ceccherini-Silberstein, Carlo-Federico Perno:
Supervised and Unsupervised Approaches for Analyzing Covariation and Phenotypic Impact of HIV Drug Resistance Mutations. LWA 2005: 234-239 - [c62]Tobias Sing, Valentina Svicher
, Niko Beerenwinkel, Francesca Ceccherini-Silberstein, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann
, Mark Oette, Jürgen K. Rockstroh, Gerd Fätkenheuer, Carlo-Federico Perno
, Thomas Lengauer:
Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking. PKDD 2005: 285-296 - 2004
- [j57]Torsten Crass, Iris Antes, Rico Basekow, Peer Bork
, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote
, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel
, Thomas Lengauer, Ines Liebich, Mark van der Linden
, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes
, Holger Michael, Martin Mokrejs
, Tobias Müller, Heike Pospisil, Matthias Rarey
, Jens G. Reich, Ralf Schneider, Dietmar Schomburg
, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender
, Ralf Zimmer:
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinform. 20(2): 268-270 (2004) - [j56]Ingolf Sommer, Jörg Rahnenführer
, Francisco S. Domingues
, Ulrik de Lichtenberg, Thomas Lengauer:
Predicting protein structure classes from function predictions. Bioinform. 20(5): 770-776 (2004) - [j55]Niklas von Öhsen, Ingolf Sommer, Ralf Zimmer
, Thomas Lengauer:
Arby: automatic protein structure prediction using profile-profile alignment and confidence measures. Bioinform. 20(14): 2228-2235 (2004) - [j54]Christian Merkwirth, Harald Mauser, Tanja Schulz-Gasch, Olivier Roche, Martin Stahl, Thomas Lengauer:
Ensemble Methods for Classification in Cheminformatics. J. Chem. Inf. Model. 44(6): 1971-1978 (2004) - [c61]Niko Beerenwinkel, Jörg Rahnenführer
, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer:
Learning multiple evolutionary pathways from cross-sectional data. RECOMB 2004: 36-44 - [c60]Tobias Sing, Niko Beerenwinkel, Thomas Lengauer:
Learning Mixtures of Localized Rules by Maximizing the Area Under the ROC Curve. ROCAI 2004: 89-96 - 2003
- [j53]Mario Albrecht, Thomas Lengauer:
Pyranose Oxidase Identified as A Member of the GMC Oxidoreductase Family. Bioinform. 19(10): 1216-1220 (2003) - [j52]Mario Albrecht, Thomas Lengauer, Stefan Schreiber:
Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. Bioinform. 19(17): 2171-2175 (2003) - [j51]Alexander Zien, Juliane Fluck
, Ralf Zimmer
, Thomas Lengauer:
Microarrays: How Many Do You Need? J. Comput. Biol. 10(3/4): 653-667 (2003) - [j50]Marcus Peinado, Thomas Lengauer:
Parallel 'go with the winners' algorithms in distributed memory models. J. Parallel Distributed Comput. 63(9): 801-814 (2003) - [j49]Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn
, Daniel Hoffmann
, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter:
Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res. 31(13): 3850-3855 (2003) - [c59]Thomas Lengauer:
Analyzing resistance phenomena in HIV with bioinformatics methods. ECCB 2003: 92 - [c58]Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig:
Methods for optimizing antiviral combination therapies. ISMB (Supplement of Bioinformatics) 2003: 16-25 - 2002
- [j48]Ingolf Sommer, Alexander Zien, Niklas von Öhsen, Ralf Zimmer
, Thomas Lengauer:
Confidence measures for protein fold recognition. Bioinform. 18(6): 802-812 (2002) - [j47]Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
ProML - the Protein Markup Language for specification of protein sequences, structures and families. Silico Biol. 2(3): 313-324 (2002) - [j46]Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer:
Improving fold recognition of protein threading by experimental distance constraints. Silico Biol. 2(3): 325-337 (2002) - [j45]Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer:
A hypergraph-based method for unification of existing protein structure- and sequence-families. Silico Biol. 2(3): 339-349 (2002) - [j44]Sally A. Hindle, Matthias Rarey
, Christian Buning, Thomas Lengauer:
Flexible docking under pharmacophore type constraints. J. Comput. Aided Mol. Des. 16(2): 129-149 (2002) - [j43]Thomas Lengauer:
Preface: Special RECOMB 2001 Issue. J. Comput. Biol. 9(2): 147-148 (2002) - [j42]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann
, Klaus Korn
, Joachim Selbig:
Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proc. Natl. Acad. Sci. USA 99(12): 8271-8276 (2002) - [c57]Thomas Lengauer:
Editorial. ECCB 2002: 1 - [c56]Thomas Lengauer:
ECCB 2002 Organization. ECCB 2002: 2-3 - [c55]Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer:
Co-clustering of biological networks and gene expression data. ISMB 2002: 145-154 - [c54]Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer:
Microarrays: how many do you need? RECOMB 2002: 321-330 - 2001
- [j41]