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ORCID6. APBC 2008: Kyoto, Japan
- Alvis Brazma, Satoru Miyano, Tatsuya Akutsu:
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, APBC 2008, 14-17 January 2008, Kyoto, Japan. Advances in Bioinformatics and Computational Biology 6, Imperial College Press 2008, ISBN 978-1-84816-108-5 - Alvis Brazma, Satoru Miyano, Tatsuya Akutsu:
Preface.
Keynote Papers
- Andreas W. M. Dress:
Recent Progress in Phylogenetic Combinatorics. 1-4 - Minoru Kanehisa:
KEGG for Medical and Pharmaceutical Applications. 5 - Alfonso Valencia:
Protein Interactions Extracted from Genomes and Papers. 7
Contributed Papers
- Wen-Yun Yang, Bao-Liang Lu:
String Kernels with Feature Selection for SVM Protein Classification. 9-18 - Mikael Bodén:
Predicting Nucleolar Proteins Using Support-Vector Machines. 19-28 - Johannes Aßfalg, Jing Gong, Hans-Peter Kriegel, Alexey Pryakhin, Tiandi Wei, Arthur Zimek:
Supervised Ensembles of Prediction Methods for Subcellular Localization. 29-38 - Aaron M. Smalter, Jun Huan, Gerald H. Lushington:
Chemical Compound Classification with Automatically Mined Structure Patterns. 39-48 - Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Structure-Approximating Design of Stable Proteins in 2D HP Model Fortified by Cysteine Monomers. 49-58 - Alper Küçükural, Osman Ugur Sezerman, Aytül Erçil:
Discrimination of Native Folds Using Network Properties of Protein Structures. 59-68 - Suryani Lukman, Kelvin Sim, Jinyan Li, Yi-Ping Phoebe Chen:
Interacting Amino Acid Preferences of 3D Pattern Pairs at the Binding Sites of Transient and Obligate Protein Complexes. 69-78 - Oliver Sander, Francisco S. Domingues, Hongbo Zhu, Thomas Lengauer, Ingolf Sommer:
Structural Descriptors of Protein-Protein Binding Sites. 79-88 - Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu:
A Memory Efficient Algorithm for Structural Alignment of RNAs with Embedded Simple Pseudoknots. 89-100 - Ryuichiro Nakato, Osamu Gotoh:
A Novel Method for Reducing Computational Complexity of Whole Genome Sequence Alignment. 101-110 - Huzefa Rangwala, George Karypis:
fRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information for Pairs with Low Sequence Identity. 111-122 - Jialiang Yang, Louxin Zhang:
Run Probability of High-Order Seed Patterns and its Applications to Finding Good Transition Seeds. 123-132 - Bin Ma, Hongyi Yao:
Seed Optimization Is No Easier than Optimal Golomb Ruler Design. 133-144 - Melissa J. Davis, Andrew F. Newman, Imran Khan, Jane Hunter, Mark A. Ragan:
Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions. 145-154 - Yuan-Peng Li, Bao-Liang Lu:
Semantic Similarity Definition over Gene Ontology by Further Mining of the Information Content. 155-164 - Jin-Dong Kim, Tomoko Ohta, Kanae Oda, Jun'ichi Tsujii:
From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature. 165-176 - Yang Yang, Bao-Liang Lu, Wen-Yun Yang:
Classification of Protein Sequences Based on Word Segmentation Methods. 177-186 - Jiayu Wen, Brian J. Parker, Georg F. Weiller:
Analysis of Structural Strand Asymmetry in Non-coding RNAs. 187-198 - Huei-Hun Elizabeth Tseng, Zasha Weinberg, Jeremy Gore, Ronald R. Breaker, Walter L. Ruzzo:
Finding Non-coding RNAs Through Genome-Scale Clustering. 199-210 - Sebastian Böcker, Sebastian Briesemeister, Quang Bao Anh Bui, Anke Truß:
A Fixed-Parameter Approach for Weighted Cluster Editing. 211-220 - Morihiro Hayashida, Tatsuya Akutsu:
Image Compression-based Approach to Measuring the Similarity of Protein Structures. 221-230 - Robert Warren, David Sankoff:
Genome Halving with Double Cut and Join. 231-240 - Krister M. Swenson, William Arndt, Jijun Tang, Bernard M. E. Moret:
Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes. 241-250 - Cuong Than, Luay Nakhleh:
SPR-based Tree Reconciliation: Non-binary Trees and Multiple Solutions. 251-260 - Mohamed Ibrahim Abouelhoda, Robert Giegerich, Behshad Behzadi, Jean-Marc Steyaert:
Alignment of Minisatellite Maps: A Minimum Spanning Tree-based Approach. 261-272 - Yunlei Li, Dick de Ridder, Marco J. L. de Groot, Marcel J. T. Reinders:
Metabolic Pathway Alignment (M-Pal) Reveals Diversity and Alternatives in Conserved Networks. 273-286 - Xing-Ming Zhao, Rui-Sheng Wang, Luonan Chen, Kazuyuki Aihara:
Automatic Modeling of Signal Pathways from Protein-Protein Interaction Networks. 287-296 - Satish Tadepalli, Naren Ramakrishnan, Layne T. Watson, Bhubaneswar Mishra, Richard F. Helm:
Simultaneously Segmenting Multiple Gene Expression Time Courses by Analyzing Cluster Dynamics. 297-306 - Christopher James Langmead, Sumit Kumar Jha:
Symbolic Approaches for Finding Control Strategies in Boolean Networks. 307-320 - Dmitry A. Konovalov, Dik Heg:
Estimation of Population Allele Frequencies from Small Samples Containing Multiple Generations. 321-332 - Zhixiang Chen, Bin Fu, Robert T. Schweller, Boting Yang, Zhiyu Zhao, Binhai Zhu:
Linear Time Probabilistic Algorithms for the Singular Haplotype Reconstruction Problem from SNP Fragments. 333-342 - Francis Y. L. Chin, Henry C. M. Leung, Man-Hung Siu, Siu-Ming Yiu:
Optimal Algorithm for Finding DNA Motifs with Nucleotide Adjacent Dependency. 343-352 - Bhaskar DasGupta, Jin Jun, Ion I. Mandoiu:
Primer Selection Methods for Detection of Genomic Inversions and Deletions via PAMP. 353-362 - Tyler S. Alioto, Roderic Guigó, Ernesto Picardi, Graziano Pesole:
GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts. 363-372 - Yannick Haudry, Chuang Kee Ong, Laurence Ettwiller, Hugo Bérubé, Ivica Letunic, Misha Kapushesky, Paul-Daniel Weeber, Xi Wang, Julien Gagneur, Charles Girardot, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich:
Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress. 373-382 - Juntao Li, Majid Eshaghi, Jianhua Liu, Karuturi R. Krishna Murthy:
Near-sigmoid Modeling to Simultaneously Profile Genome-wide DNA Replication Timing and Efficiency in Single DNA Replication Microarray Studies. 383-392
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