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ORCIDBurkhard Rost
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- affiliation: TU Munich, Faculty of Computer Science
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Books and Theses
- 1994
[b1]Burkhard Rost:
Neuronale Netzwerke und evolutionäre Information: verbesserte Vorhersage der Sekundärstruktur von Proteinen ; (abgefasst in Englisch). University of Heidelberg, Germany, 1994, pp. 1-252
Journal Articles
- 2023
- [j89]Vamsi Nallapareddy
, Nicola Bordin, Ian Sillitoe, Michael Heinzinger, Maria Littmann, Vaishali P. Waman, Neeladri Sen, Burkhard Rost, Christine A. Orengo:
CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models. Bioinform. 39(1) (2023) - [j88]Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan:
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. Nucleic Acids Res. 51(W1): 62-69 (2023) - 2022
- [j87]Michael Bernhofer, Burkhard Rost:
TMbed: transmembrane proteins predicted through language model embeddings. BMC Bioinform. 23(1): 326 (2022) - [j86]Dagmar Ilzhöfer, Michael Heinzinger, Burkhard Rost:
SETH predicts nuances of residue disorder from protein embeddings. Frontiers Bioinform. 2 (2022) - [j85]Konstantin Schütze, Michael Heinzinger, Martin Steinegger, Burkhard Rost:
Nearest neighbor search on embeddings rapidly identifies distant protein relations. Frontiers Bioinform. 2 (2022) - [j84]Ludwig Lautenbacher, Patroklos Samaras, Julian Müller, Andreas Grafberger, Marwin Shraideh, Johannes Rank, Simon T. Fuchs, Tobias K. Schmidt, Matthew The, Christian Dallago, Holger Wittges, Burkhard Rost, Helmut Krcmar, Bernhard Küster, Mathias Wilhelm:
ProteomicsDB: toward a FAIR open-source resource for life-science research. Nucleic Acids Res. 50(D1): 1541- (2022) - [j83]Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost:
ProtTrans: Toward Understanding the Language of Life Through Self-Supervised Learning. IEEE Trans. Pattern Anal. Mach. Intell. 44(10): 7112-7127 (2022) - [j82]Gabriel Foley, Ariane Mora, Connie M. Ross, Scott Bottoms, Leander Sützl, Marnie L. Lamprecht, Julian Zaugg, Alexandra Essebier, Brad Balderson, Rhys Newell, Raine E. S. Thomson, Bostjan Kobe, Ross T. Barnard, Luke Guddat, Gerhard Schenk, Jörg Carsten, Yosephine Gumulya, Burkhard Rost, Dietmar Haltrich, Volker Sieber, Elizabeth M. J. Gillam, Mikael Bodén:
Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP). PLoS Comput. Biol. 18(10): 1010633 (2022) - 2021
- [j81]Jan Zaucha, Michael Heinzinger, A. Kulandaisamy, Evans Kataka, Óscar Llorian Salvádor, Petr Popov, Burkhard Rost, M. Michael Gromiha, Boris S. Zhorov, Dmitrij Frishman:
Mutations in transmembrane proteins: diseases, evolutionary insights, prediction and comparison with globular proteins. Briefings Bioinform. 22(3) (2021) - [j80]Maria Littmann, Nicola Bordin, Michael Heinzinger, Konstantin Schütze, Christian Dallago, Christine A. Orengo, Burkhard Rost:
Clustering FunFams using sequence embeddings improves EC purity. Bioinform. 37(20): 3449-3455 (2021) - [j79]Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost:
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49(Webserver-Issue): 535-540 (2021) - 2020
- [j78]Jonas Reeb, Theresa Wirth, Burkhard Rost:
Variant effect predictions capture some aspects of deep mutational scanning experiments. BMC Bioinform. 21(1): 107 (2020) - [j77]Jiajun Qiu, Dmitrii Nechaev, Burkhard Rost:
Protein-protein and protein-nucleic acid binding residues important for common and rare sequence variants in human. BMC Bioinform. 21(1): 452 (2020) - [j76]Maria Littmann, Katharina Selig, Liel Cohen-Lavi, Yotam Frank, Peter Hönigschmid, Evans Kataka, Anja Mösch, Kun Qian, Avihai Ron, Sebastian Schmid, Adam Sorbie, Liran Szlak, Ayana Dagan-Wiener, Nir Ben-Tal, Masha Y. Niv, Daniel Razansky, Björn W. Schuller, Donna P. Ankerst, Tomer Hertz, Burkhard Rost:
Validity of machine learning in biology and medicine increased through collaborations across fields of expertise. Nat. Mach. Intell. 2(1): 18-24 (2020) - 2019
- [j75]Maria Littmann, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén, Burkhard Rost:
Detailed prediction of protein sub-nuclear localization. BMC Bioinform. 20(1): 205:1-205:15 (2019) - [j74]Linus Scheibenreif, Maria Littmann, Christine A. Orengo, Burkhard Rost:
FunFam protein families improve residue level molecular function prediction. BMC Bioinform. 20(1): 400:1-400:9 (2019) - [j73]Michael Heinzinger, Ahmed Elnaggar, Yu Wang, Christian Dallago, Dmitrii Nechaev, Florian Matthes, Burkhard Rost:
Modeling aspects of the language of life through transfer-learning protein sequences. BMC Bioinform. 20(1): 723 (2019) - [j72]Maria Littmann, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén, Burkhard Rost:
Correction to: Detailed prediction of protein sub-nuclear localization. BMC Bioinform. 20(1): 727 (2019) - 2018
- [j71]Yannick Mahlich, Martin Steinegger, Burkhard Rost, Yana Bromberg:
HFSP: high speed homology-driven function annotation of proteins. Bioinform. 34(13): i304-i312 (2018) - [j70]Valérie Marot-Lassauzaie, Michael Bernhofer, Burkhard Rost:
Correcting mistakes in predicting distributions. Bioinform. 34(19): 3385-3386 (2018) - [j69]Juan Miguel Cejuela, Shrikant Vinchurkar, Tatyana Goldberg, Madhukar Sollepura Prabhu Shankar, Ashish Baghudana, Aleksandar Bojchevski, Carsten Uhlig, André Ofner, Pandu Raharja-Liu, Lars Juhl Jensen, Burkhard Rost:
LocText: relation extraction of protein localizations to assist database curation. BMC Bioinform. 19(1): 15:1-15:11 (2018) - [j68]Michael Bernhofer, Tatyana Goldberg, Silvana Wolf, Mohamed Ahmed, Julian Zaugg, Mikael Bodén, Burkhard Rost:
NLSdb - major update for database of nuclear localization signals and nuclear export signals. Nucleic Acids Res. 46(Database-Issue): D503-D508 (2018) - 2017
- [j67]Juan Miguel Cejuela, Aleksandar Bojchevski, Carsten Uhlig, Rustem Bekmukhametov, Sanjeev Kumar Karn, Shpend Mahmuti, Ashish Baghudana, Ankit Dubey, Venkata P. Satagopam, Burkhard Rost:
nala: text mining natural language mutation mentions. Bioinform. 33(12): 1852-1858 (2017) - [j66]Julien Gagneur, Caroline C. Friedel, Volker Heun, Ralf Zimmer, Burkhard Rost:
Bioinformatics advances biology and medicine by turning big data troves into knowledge. Inform. Spektrum 40(2): 153-160 (2017) - 2016
- [j65]Guy Yachdav, Sebastian Wilzbach, Benedikt Rauscher, Robert Sheridan, Ian Sillitoe, James B. Procter, Suzanna E. Lewis, Burkhard Rost, Tatyana Goldberg:
MSAViewer: interactive JavaScript visualization of multiple sequence alignments. Bioinform. 32(22): 3501-3503 (2016) - [j64]Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak:
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - [j63]Jonas Reeb, Maximilian Hecht, Yannick Mahlich, Yana Bromberg, Burkhard Rost:
Predicted Molecular Effects of Sequence Variants Link to System Level of Disease. PLoS Comput. Biol. 12(8) (2016) - 2015
- [j62]Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost:
Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus. Bioinform. 31(4): 616-617 (2015) - [j61]Tobias Hamp, Burkhard Rost:
More challenges for machine-learning protein interactions. Bioinform. 31(10): 1521-1525 (2015) - [j60]Tobias Hamp, Burkhard Rost:
Evolutionary profiles improve protein-protein interaction prediction from sequence. Bioinform. 31(12): 1945-1950 (2015) - [j59]Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost:
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. PLoS Comput. Biol. 11(1) (2015) - 2014
- [j58]Juan Miguel Cejuela, Peter McQuilton, Laura Ponting, Steven J. Marygold, Raymund Stefancsik, Gillian H. Millburn, Burkhard Rost:
tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles. Database J. Biol. Databases Curation 2014 (2014) - [j57]Burkhard Rost:
ISCB: past-present perspective for the International Society for Computational Biology. Bioinform. 30(1): 143-145 (2014) - [j56]László Kaján, Thomas A. Hopf, Matú Kala, Debora S. Marks, Burkhard Rost:
FreeContact: fast and free software for protein contact prediction from residue co-evolution. BMC Bioinform. 15: 85 (2014) - [j55]Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost:
PredictProtein - an open resource for online prediction of protein structural and functional features. Nucleic Acids Res. 42(Webserver-Issue): 337-343 (2014) - [j54]Tatyana Goldberg, Maximilian Hecht, Tobias Hamp, Timothy Karl, Guy Yachdav, Nadeem Ahmed, Uwe Altermann, Philipp Angerer, Sonja Ansorge, Kinga Balasz, Michael Bernhofer, Alexander Betz, Laura Cizmadija, Kieu Trinh Do, Julia Gerke, Robert Greil, Vadim Joerdens, Maximilian Hastreiter, Katharina Hembach, Max Herzog, Maria Kalemanov, Michael Kluge, Alice Meier, Hassan Nasir, Ulrich Neumaier, Verena Prade, Jonas Reeb, Aleksandr Sorokoumov, Ilira Troshani, Susann Vorberg, Sonja Waldraff, Jonas Zierer, Henrik Nielsen, Burkhard Rost:
LocTree3 prediction of localization. Nucleic Acids Res. 42(Webserver-Issue): 350-355 (2014) - 2013
- [j53]Burkhard Rost:
ISCB: past-present perspective for the International Society for Computational Biology. Bioinform. 29(24): 3243-3245 (2013) - [j52]Tobias Hamp, Rebecca Kassner, Stefan Seemayer, Esmeralda Vicedo, Christian Schaefer, Dominik Achten, Florian Auer, Ariane Boehm, Tatjana Braun, Maximilian Hecht, Mark Heron, Peter Hönigschmid, Thomas A. Hopf, Stefanie Kaufmann, Michael Kiening, Denis Krompass, Cedric Landerer, Yannick Mahlich, Manfred Roos, Burkhard Rost:
Homology-based inference sets the bar high for protein function prediction. BMC Bioinform. 14(S-3): S7 (2013) - [j51]Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff MacIntyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost:
ISCB Computational Biology Wikipedia Competition. PLoS Comput. Biol. 9(9) (2013) - 2012
- [j50]Christian Schaefer, Alice Meier, Burkhard Rost, Yana Bromberg:
SNPdbe: constructing an nsSNP functional impacts database. Bioinform. 28(4): 601-602 (2012) - [j49]Tatyana Goldberg, Tobias Hamp, Burkhard Rost:
LocTree2 predicts localization for all domains of life. Bioinform. 28(18): 458-465 (2012) - [j48]Burkhard Rost, Terry Gaasterland, Thomas Lengauer, Michal Linial, Scott Markel, B. J. Morrison McKay, Reinhard Schneider, Paul Horton, Janet Kelso:
Paving the future: finding suitable ISMB venues. Bioinform. 28(19): 2556-2559 (2012) - [j47]Tobias Hamp, Burkhard Rost:
Alternative Protein-Protein Interfaces Are Frequent Exceptions. PLoS Comput. Biol. 8(8) (2012) - 2011
- [j46]Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan, Tin Wee Tan:
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference. BMC Bioinform. 12(S-13): S1 (2011) - [j45]Shruti Rastogi, Burkhard Rost:
LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana. Nucleic Acids Res. 39(Database-Issue): 230-234 (2011) - [j44]Richard H. Lathrop, Burkhard Rost:
ISCB Public Policy Statement on Open Access to Scientific and Technical Research Literature. PLoS Comput. Biol. 7(2) (2011) - 2010
- [j43]Christian Schaefer, Avner Schlessinger, Burkhard Rost:
Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be. Bioinform. 26(5): 625-631 (2010) - [j42]Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal:
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Res. 38(Web-Server-Issue): 523-528 (2010) - 2009
- [j41]Yana Bromberg, Burkhard Rost:
Correlating protein function and stability through the analysis of single amino acid substitutions. BMC Bioinform. 10(S-8): 8 (2009) - 2008
- [j40]Dariusz Przybylski, Burkhard Rost:
Powerful fusion: PSI-BLAST and consensus sequences. Bioinform. 24(18): 1987-1993 (2008) - [j39]Marco Lippi, Andrea Passerini, Marco Punta, Burkhard Rost, Paolo Frasconi:
MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence. Bioinform. 24(18): 2094-2095 (2008) - [j38]Yana Bromberg, Guy Yachdav, Burkhard Rost:
SNAP predicts effect of mutations on protein function. Bioinform. 24(20): 2397-2398 (2008) - [j37]Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost:
Physical protein-protein interactions predicted from microarrays. Bioinform. 24(22): 2608-2614 (2008) - [j36]Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost:
ISMB 2008 Toronto. PLoS Comput. Biol. 4(6) (2008) - 2007
- [j35]Yanay Ofran, Burkhard Rost:
ISIS: interaction sites identified from sequence. Bioinform. 23(2): 13-16 (2007) - [j34]Avner Schlessinger, Marco Punta, Burkhard Rost:
Natively unstructured regions in proteins identified from contact predictions. Bioinform. 23(18): 2376-2384 (2007) - [j33]Thomas Lengauer, B. J. Morrison McKay, Burkhard Rost:
ISMB/ECCB 2007: The Premier Conference on Computational Biology. PLoS Comput. Biol. 3(5) (2007) - [j32]Yanay Ofran, Burkhard Rost:
Protein-Protein Interaction Hotspots Carved into Sequences. PLoS Comput. Biol. 3(7) (2007) - [j31]Avner Schlessinger, Jinfeng Liu, Burkhard Rost:
Natively Unstructured Loops Differ from Other Loops. PLoS Comput. Biol. 3(7) (2007) - 2006
- [j30]Avner Schlessinger, Guy Yachdav, Burkhard Rost:
PROFbval: predict flexible and rigid residues in proteins. Bioinform. 22(7): 891-893 (2006) - [j29]Avner Schlessinger, Yanay Ofran, Guy Yachdav, Burkhard Rost:
Epitome: database of structure-inferred antigenic epitopes. Nucleic Acids Res. 34(Database-Issue): 777-780 (2006) - [j28]Henry R. Bigelow, Burkhard Rost:
PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins. Nucleic Acids Res. 34(Web-Server-Issue): 186-188 (2006) - [j27]Sven Mika, Burkhard Rost:
Protein-Protein Interactions More Conserved within Species than across Species. PLoS Comput. Biol. 2(7) (2006) - 2005
- [j26]Marco Punta, Burkhard Rost:
PROFcon: novel prediction of long-range contacts. Bioinform. 21(13): 2960-2968 (2005) - [j25]Sven Mika, Burkhard Rost:
NMPdb: Database of Nuclear Matrix Proteins. Nucleic Acids Res. 33(Database-Issue): 160-163 (2005) - [j24]Osvaldo Graña, Volker A. Eyrich, Florencio Pazos, Burkhard Rost, Alfonso Valencia:
EVAcon: a protein contact prediction evaluation service. Nucleic Acids Res. 33(Web-Server-Issue): 347-351 (2005) - 2004
- [j23]Janice I. Glasgow, Igor Jurisica, Burkhard Rost:
AI and Bioinformatics. AI Mag. 25(1): 7-8 (2004) - [j22]Rajesh Nair, Burkhard Rost:
Annotating Protein Function through Lexical Analysis. AI Mag. 25(1): 45-56 (2004) - [j21]Burkhard Rost, Guy Yachdav, Jinfeng Liu:
The PredictProtein server. Nucleic Acids Res. 32(Web-Server-Issue): 321-326 (2004) - [j20]Rajesh Nair, Burkhard Rost:
LOCnet and LOCtarget: sub-cellular localization for structural genomics targets. Nucleic Acids Res. 32(Web-Server-Issue): 517-521 (2004) - [j19]Jinfeng Liu, Burkhard Rost:
CHOP: parsing proteins into structural domains. Nucleic Acids Res. 32(Web-Server-Issue): 569-571 (2004) - [j18]Sven Mika, Burkhard Rost:
NLProt: extracting protein names and sequences from papers. Nucleic Acids Res. 32(Web-Server-Issue): 634-637 (2004) - 2003
- [j17]Rajesh Nair, Phil Carter, Burkhard Rost:
NLSdb: database of nuclear localization signals. Nucleic Acids Res. 31(1): 397-399 (2003) - [j16]Phil Carter, Jinfeng Liu, Burkhard Rost:
PEP: Predictions for Entire Proteomes. Nucleic Acids Res. 31(1): 410-413 (2003) - [j15]Phil Carter, Claus A. F. Andersen, Burkhard Rost:
DSSPcont: continuous secondary structure assignments for proteins. Nucleic Acids Res. 31(13): 3293-3295 (2003) - [j14]Burkhard Rost, Jinfeng Liu:
The PredictProtein server. Nucleic Acids Res. 31(13): 3300-3304 (2003) - [j13]Volker A. Eyrich, Burkhard Rost:
META-PP: single interface to crucial prediction servers. Nucleic Acids Res. 31(13): 3308-3310 (2003) - [j12]Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost:
EVA: evaluation of protein structure prediction servers. Nucleic Acids Res. 31(13): 3311-3315 (2003) - [j11]Rajesh Nair, Burkhard Rost:
LOC3D: annotate sub-cellular localization for protein structures. Nucleic Acids Res. 31(13): 3337-3340 (2003) - [j10]Andrew Kernytsky, Burkhard Rost:
Static benchmarking of membrane helix predictions. Nucleic Acids Res. 31(13): 3642-3644 (2003) - [j9]Sven Mika, Burkhard Rost:
UniqueProt: creating representative protein sequence sets. Nucleic Acids Res. 31(13): 3789-3791 (2003) - [j8]Jinfeng Liu, Burkhard Rost:
NORSp: predictions of long regions without regular secondary structure. Nucleic Acids Res. 31(13): 3833-3835 (2003) - 2002
- [j7]Burkhard Rost, Barry Honig, Alfonso Valencia:
Bioinformatics in structural genomics - Editorial. Bioinform. 18(7): 897 (2002) - [j6]Jinfeng Liu, Burkhard Rost:
Target space for structural genomics revisited. Bioinform. 18(7): 922-933 (2002) - 2001
- [j5]Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost:
EVA: continuous automatic evaluation of protein structure prediction servers. Bioinform. 17(12): 1242-1243 (2001) - 1999
- [j4]Florencio Pazos, Burkhard Rost, Alfonso Valencia:
A platform for integrating threading results with protein family analyses. Bioinform. 15(12): 1062-1063 (1999) - 1997
- [j3]Burkhard Rost, Seán I. O'Donoghue:
Sisyphus and prediction of protein structure. Comput. Appl. Biosci. 13(4): 345-356 (1997) - 1994
- [j2]Burkhard Rost, Chris Sander, Reinhard Schneider:
PHD - an automatic mail server for protein secondary structure prediction. Comput. Appl. Biosci. 10(1): 53-60 (1994) - 1992
- [j1]Burkhard Rost, Chris Sander:
Exercising Multi-Layered Networks on Protein Secondary Structure. Int. J. Neural Syst. 3(Supplement): 209-220 (1992)
Conference and Workshop Papers
- 2008
- [c12]Yana Bromberg, Burkhard Rost:
Comprehensive in silico mutagenesis highlights functionally important residues in proteins. ECCB 2008: 207-212 - 2007
- [c11]Yanay Ofran, Venkatesh Mysore, Burkhard Rost:
Prediction of DNA-binding residues from sequence. ISMB/ECCB (Supplement of Bioinformatics) 2007: 347-353 - 2006
- [c10]Yanay Ofran, Guy Yachdav, Eyal Mozes, Ta-tsen Soong, Rajesh Nair, Burkhard Rost:
Create and assess protein networks through molecular characteristics of individual proteins. ISMB (Supplement of Bioinformatics) 2006: 402-407 - 2005
- [c9]H. V. Jagadish, David J. States, Burkhard Rost:
ISMB 2005. ISMB (Supplement of Bioinformatics) 2005: 1-2 - [c8]H. V. Jagadish, David J. States, Burkhard Rost:
ISMB 2005 Organization. ISMB (Supplement of Bioinformatics) 2005: 3-6 - 2004
- [c7]Sven Mika, Burkhard Rost:
Protein names precisely peeled off free text. ISMB/ECCB (Supplement of Bioinformatics) 2004: 241-247 - 2002
- [c6]Janice I. Glasgow, Burkhard Rost:
ISMB 2002. ISMB 2002: 1-4 - [c5]Rajesh Nair, Burkhard Rost:
Inferring sub-cellular localization through automated lexical analysis. ISMB 2002: 78-86 - 1997
- [c4]Burkhard Rost:
Learning from Evolution to Predict Protein Structure. BCEC 1997: 87-101 - 1996
- [c3]Burkhard Rost, Rita Casadio, Piero Fariselli:
Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming. ISMB 1996: 192-200 - 1995
- [c2]Burkhard Rost:
TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures. ISMB 1995: 314-321 - 1994
- [c1]Burkhard Rost, Chris Sander, Reinhard Schneider:
Evolution and Neural Networks - Protein Secondary Structure Prediction Above 71% Accuracy. HICSS (5) 1994: 385-394
Parts in Books or Collections
- 2017
- [p2]Julien Gagneur, Caroline C. Friedel, Volker Heun, Ralf Zimmer, Burkhard Rost:
Bioinformatics Advances Biology and Medicine by Turning Big Data Troves into Knowledge. 50 Jahre Universitäts-Informatik in München 2017: 33-45 - 2009
- [p1]Marco Punta, Burkhard Rost:
Neural Networks Predict Protein Structure and Function. Artificial Neural Networks 2009: 198-225
Reference Works
- 2019
- [r1]Jonas Reeb, Burkhard Rost:
Secondary Structure Prediction. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 488-496
Informal and Other Publications
- 2024
- [i5]Peter St. John, Dejun Lin, Polina Binder, Malcolm Greaves, Vega Shah, John St. John, Adrian Lange, Patrick D. Hsu, Rajesh Illango, Arvind Ramanathan, Anima Anandkumar, David H. Brookes, Akosua Busia, Abhishaike Mahajan, Stephen Malina, Neha Prasad, Sam Sinai, Lindsay Edwards, Thomas Gaudelet, Cristian Regep, Martin Steinegger, Burkhard Rost, Alexander Brace, Kyle Hippe, Luca Naef, Keisuke Kamata, George Armstrong, Kevin Boyd, Zhonglin Cao, Han-Yi Chou, Simon Chu, Allan dos Santos Costa, Sajad Darabi, Eric Dawson, Kieran Didi, Cong Fu, Mario Geiger, Michelle Gill, Darren Hsu, Gagan Kaushik, Maria Korshunova, Steven Kothen-Hill, Youhan Lee, Meng Liu, Micha Livne, Zachary McClure, Jonathan Mitchell, Alireza Moradzadeh, Ohad Mosafi, Youssef Nashed, Saee Paliwal, Yuxing Peng, Sara Rabhi, Farhad Ramezanghorbani, Danny Reidenbach, Camir Ricketts, Brian Roland, Kushal Shah, Tyler Shimko, Hassan Sirelkhatim, Savitha Srinivasan, Abraham C. Stern, Dorota Toczydlowska, Srimukh Prasad Veccham, Niccolò Alberto Elia Venanzi, Anton Vorontsov, Jared Wilber, Isabel Wilkinson, Wei Jing Wong, Eva Xue, Cory Ye, Xin Yu, Yang Zhang, Guoqing Zhou, Becca Zandstein, Christian Dallago, Bruno Trentini, Emine Küçükbenli, Timur Rvachov, Eddie Calleja, Johnny Israeli, Harry Clifford, Risto Haukioja, Nicholas Haemel, Kyle Tretina, Neha Tadimeti, Anthony B. Costa:
BioNeMo Framework: a modular, high-performance library for AI model development in drug discovery. CoRR abs/2411.10548 (2024) - 2023
- [i4]Ahmed Elnaggar, Hazem Essam, Wafaa Salah-Eldin, Walid Moustafa, Mohamed Elkerdawy, Charlotte Rochereau, Burkhard Rost:
Ankh: Optimized Protein Language Model Unlocks General-Purpose Modelling. CoRR abs/2301.06568 (2023) - 2021
- [i3]Ahmed Elnaggar, Wei Ding, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Silvia Severini, Florian Matthes, Burkhard Rost:
CodeTrans: Towards Cracking the Language of Silicone's Code Through Self-Supervised Deep Learning and High Performance Computing. CoRR abs/2104.02443 (2021) - 2020
- [i2]Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger, Debsindhu Bhowmik, Burkhard Rost:
ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance Computing. CoRR abs/2007.06225 (2020) - 2014
- [i1]Guy Yachdav, Maximilian Hecht, Metsada Pasmanik-Chor, Adva Yeheskel, Burkhard Rost:
HeatMapViewer: interactive display of 2D data in biology. F1000Research 3: 48 (2014)
Coauthor Index
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