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Computers in Biology and Medicine, Volume 42
Volume 42, Number 1, January 2012
- Xiaofeng Song, Lei Cheng, Tao Zhou, Xuejiang Guo, Xiaobai Zhang, Yi-Ping Phoebe Chen, Ping Han, Jiahao Sha:
Predicting miRNA-mediated gene silencing mode based on miRNA-target duplex features. 1-7 - Quansheng Xu, Kangning Xie, Kehong Yuan, Lijuan Yu, Wenzhi Wang, Datian Ye:
A statistical study of the factors influencing the extent of respiratory motion blur in PET imaging. 8-18 - Emmanouil G. Sifakis, Andriana Prentza, Dimitris Koutsouris, Aristotelis A. Chatziioannou:
Evaluating the effect of various background correction methods regarding noise reduction, in two-channel microarray data. 19-29 - Hu Huang, Hong-Bo Xie, Jing-Yi Guo, Hui-Juan Chen:
Ant colony optimization-based feature selection method for surface electromyography signals classification. 30-38 - Pejman Farhadi Ghalati, Erfan Keshavarzian, Omid Abouali, Abolhassan Faramarzi, Jiyuan Tu, Alireza Shakibafard:
Numerical analysis of micro- and nano-particle deposition in a realistic human upper airway. 39-49 - Elahe Moghimirad, Seyed Hamid Rezatofighi, Hamid Soltanian-Zadeh:
Retinal vessel segmentation using a multi-scale medialness function. 50-60 - George Tzanis, Christos Berberidis, Ioannis P. Vlahavas:
StackTIS: A stacked generalization approach for effective prediction of translation initiation sites. 61-69 - Kaushik Kumar Majumdar:
Differential operator in seizure detection. 70-74 - Pelin Kus, Irfan Karagoz:
Fully automated gradient based breast boundary detection for digitized X-ray mammograms. 75-82 - Saurabh Pal, Madhuchhanda Mitra:
Empirical mode decomposition based ECG enhancement and QRS detection. 83-92 - Shih-Yen Ku, Yuh-Jyh Hu:
Structural alphabet motif discovery and a structural motif database. 93-105 - Siripit Pitchuanchom, Chantana Boonyarat, Stefano Forli, Arthur J. Olson, Chavi Yenjai:
Cyclin-dependent kinases 5 template: Useful for virtual screening. 106-111 - Yin-Fu Huang, Ching-Ping Liang, Sing-Wu Liou:
Intron identification approaches based on weighted features and fuzzy decision trees. 112-122 - Mohamed Meselhy Eltoukhy, Ibrahima Faye, Samir Brahim Belhaouari:
A statistical based feature extraction method for breast cancer diagnosis in digital mammogram using multiresolution representation. 123-128 - John L. Sfondouris, Tabitha M. Quebedeaux, Chris Holdgraf, Alberto E. Musto:
Combined process automation for large-scale EEG analysis. 129-134 - João Dallyson Sousa de Almeida, Aristófanes Corrêa Silva, Anselmo Cardoso de Paiva, Jorge Antonio Meireles Teixeira:
Computational methodology for automatic detection of strabismus in digital images through Hirschberg test. 135-146
Volume 42, Number 2, February 2012
- Diego Alexander Garzón-Alvarado, Marco A. Velasco, Carlos A. Narváez-Tovar:
Modeling porous scaffold microstructure by a reaction-diffusion system and its degradation by hydrolysis. 147-155 - M. V. K. Karthik, M. V. K. N. Satya Deepak, Pratyoosh Shukla:
Explication of interactions between HMGCR isoform 2 and various statins through In silico modeling and docking. 156-163 - Eduardo Miranda Dantas, Marcela Lima Sant'Anna, Rodrigo Varejão Andreão, Christine Pereira Gonçalves, Elis Aguiar Morra, Marcelo Perim Baldo, Sérgio Lamêgo Rodrigues, José Geraldo Mill:
Spectral analysis of heart rate variability with the autoregressive method: What model order to choose? 164-170 - Sergey Vaisman, Shimrit Yaniv Salem, Gershon Holcberg, Amir B. Geva:
Passive fetal monitoring by adaptive wavelet denoising method. 171-179 - Ru-Ping Liang, Shu-Yun Huang, Shao-Ping Shi, Xing-Yu Sun, Sheng-Bao Suo, Jian-Ding Qiu:
A novel algorithm combining support vector machine with the discrete wavelet transform for the prediction of protein subcellular localization. 180-187 - Cristóbal Fresno, Andrea S. Llera, María R. Girotti, María P. Valacco, Juan A. López del Olmo, Osvaldo L. Podhajcer, Mónica Balzarini, Federico Prada, Elmer Andrés Fernández:
The multi-reference contrast method: Facilitating set enrichment analysis. 188-194 - Themis P. Exarchos, Alexandros T. Tzallas, Dina Baga, Dimitra Chaloglou, Dimitrios I. Fotiadis, Sofia Tsouli, Maria Diakou, Spiros Konitsiotis:
Using partial decision trees to predict Parkinson's symptoms: A new approach for diagnosis and therapy in patients suffering from Parkinson's disease. 195-204 - Nami K. Takano, Takeshi Tsutsumi, Hiroshi Suzuki, Yoshiwo Okamoto, Toshiaki Nakajima:
Time frequency power profile of QRS complex obtained with wavelet transform in spontaneously hypertensive rats. 205-212 - You-Shyang Chen, Ching-Hsue Cheng, Chien-Jung Lai, Cheng-Yi Hsu, Han-Jhou Syu:
Identifying patients in target customer segments using a two-stage clustering-classification approach: A hospital-based assessment. 213-221 - Fatemeh Dorri, Paeiz Azmi, Faezeh Dorri:
Missing value imputation in DNA microarrays based on conjugate gradient method. 222-227 - Chaang-Ray Chen, Wun-Yi Shu, Min-Lung Tsai, Wei-Chung Cheng, Ian C. Hsu:
THEME: A web tool for loop-design microarray data analysis. 228-234 - Giacomo Veneri, Francesca Rosini, Pamela Federighi, Antonio Federico, Alessandra Rufa:
Evaluating gaze control on a multi-target sequencing task: The distribution of fixations is evidence of exploration optimisation. 235-244 - Federico Divina, Beatriz Pontes, Raúl Giráldez, Jesús S. Aguilar-Ruiz:
An effective measure for assessing the quality of biclusters. 245-256 - Carlos Fernando Crispim Junior, Cesar Nonato Pederiva, Ricardo Chessini Bose, Vitor Augusto Garcia, Cilene Lino-de-Oliveira, José Marino Neto:
ETHOWATCHER: validation of a tool for behavioral and video-tracking analysis in laboratory animals. 257-264
Volume 42, Number 3, March 2012
- Niels Wessel, Peter Van Leeuwen:
Computing complexity in cardiovascular oscillations: Selected papers from the 6th Conference of the ESGCO. 265-266
- Teodor Buchner, Jakub Pietkun, Pawel Kuklik:
Complex activity patterns in arterial wall: Results from a model of calcium dynamics. 267-275 - Adriane B. Schelin, György Károlyi, Alessandro P. S. de Moura, Nuala Booth, Celso Grebogi:
Are the fractal skeletons the explanation for the narrowing of arteries due to cell trapping in a disturbed blood flow? 276-281 - Federico Aletti, Rebecca Re, Vincenzo Pace, Davide Contini, Erika Molteni, Sergio Cerutti, Anna M. Bianchi, Alessandro Torricelli, Lorenzo Spinelli, Rinaldo Cubeddu, Giuseppe Baselli:
Deep and surface hemodynamic signal from functional time resolved transcranial near infrared spectroscopy compared to skin flowmotion. 282-289
- Luca Faes, Giandomenico Nollo, Alberto Porta:
Non-uniform multivariate embedding to assess the information transfer in cardiovascular and cardiorespiratory variability series. 290-297 - Alberto Porta, Tito Bassani, Vlasta Bari, Eleonora Tobaldini, Anielle C. M. Takahashi, Aparecida Maria Catai, Nicola Montano:
Model-based assessment of baroreflex and cardiopulmonary couplings during graded head-up tilt. 298-305 - Tito Bassani, Valentina Magagnin, Stefano Guzzetti, Giuseppe Baselli, Giuseppe Citerio, Alberto Porta:
Testing the involvement of baroreflex during general anesthesia through Granger causality approach. 306-312
- Dirk Cysarz, Peter Van Leeuwen, Friedrich Edelhäuser, Nicola Montano, Alberto Porta:
Binary symbolic dynamics classifies heart rate variability patterns linked to autonomic modulations. 313-318 - Ulrich Parlitz, Sebastian Berg, Stefan Luther, Alexander Schirdewan, Jürgen Kurths, Niels Wessel:
Classifying cardiac biosignals using ordinal pattern statistics and symbolic dynamics. 319-327 - Thomas Penzel, Maik Riedl, Andrej Gapelyuk, Alexander Suhrbier, Georg Bretthauer, Hagen Malberg, Christoph Schöbel, Ingo Fietze, Jörg Heitmann, Jürgen Kurths, Niels Wessel:
Effect of CPAP therapy on daytime cardiovascular regulations in patients with obstructive sleep apnea. 328-334
- Dirk Hoyer, Samuel Nowack, Stephan Bauer, Florian Tetschke, Stefan Ludwig, Liviu Moraru, Anja Rudoph, Ulrike Wallwitz, Franziska Jaenicke, Jens Haueisen, Ekkehard Schleußner, Uwe Schneider:
Fetal development assessed by heart rate patterns - Time scales of complex autonomic control. 335-341 - Peter Van Leeuwen, Anna Voß, Dirk Cysarz, Friedrich Edelhäuser, Dietrich H. W. Grönemeyer:
Automatic identification of fetal breathing movements in fetal RR interval time series. 342-346 - Mathias Baumert, Michal Javorka, Andrea Seeck, Renaldo Faber, Prashanthan Sanders, Andreas Voss:
Multiscale entropy and detrended fluctuation analysis of QT interval and heart rate variability during normal pregnancy. 347-352
Volume 42, Number 4, April 2012
- Bian Wu, Fan Yang, Ji-cai Zhang, Yiwen Wang, Xiaoxiang Zheng, Weidong Chen:
A frequency-temporal-spatial method for motor-related electroencephalography pattern recognition by comprehensive feature optimization. 353-363 - Manuel Chica, Pascual Campoy Cervera, María A. Pérez, Tomás Rodríguez, Rubén Rodríguez, Óscar Valdemoros:
Real-time recognition of patient intentions from sequences of pressure maps using artificial neural networks. 364-375 - Konstantinos Sidiropoulos, Dimitris Glotsos, Spiros Kostopoulos, Panagiota Ravazoula, Ioannis Kalatzis, Dionisis A. Cavouras, T. John Stonham:
Real time decision support system for diagnosis of rare cancers, trained in parallel, on a graphics processing unit. 376-386 - Hyonyoung Han, Jung Kim:
Artifacts in wearable photoplethysmographs during daily life motions and their reduction with least mean square based active noise cancellation method. 387-393 - Gleb V. Tcheslavski, Fahrettin Firat Gonen:
Alcoholism-related alterations in spectrum, coherence, and phase synchrony of topical electroencephalogram. 394-401 - Yuehui Chen, Jingru Xu, Bin Yang, Yaou Zhao, Wenxing He:
A novel method for prediction of protein interaction sites based on integrated RBF neural networks. 402-407 - Xuan Zhou, Zhanchao Li, Zong Dai, Xiaoyong Zou:
Prediction of methylation CpGs and their methylation degrees in human DNA sequences. 408-413 - Sako Mirzaie, Fatemeh Rafii, Katsuaki Yasunaga, Kunie Yoshunaga, Zargham Sepehrizadeh, Shinji Kanno, Yu Tonegawa, Ahmad Reza Shahverdi:
Prediction of the mode of interaction between monoterpenes and the nitroreductase from Enterobacter cloacae by docking simulation. 414-421 - Kwanguk Kim, Daeyoung Roh, Sun I. Kim, Chan-Hyung Kim:
Provoked arrangement symptoms in obsessive-compulsive disorder using a virtual environment: A preliminary report. 422-427 - Junpeng Zhang, Bing Liu, Jianfeng He, Lei Ma, Jiuyong Li:
Inferring functional miRNA-mRNA regulatory modules in epithelial-mesenchymal transition with a probabilistic topic model. 428-437 - Ramon Clèries, Jordi Galvez, Meritxell Espino, Josepa Ribes Puig, Virginia Nunes, Miguel López de Heredia:
BootstRatio: A web-based statistical analysis of fold-change in qPCR and RT-qPCR data using resampling methods. 438-445 - P. Ajay Babu, Viswa Teja S. S. Colluru, Naishitha Anaparthy:
In-silico characterization of ECE-1 inhibitors. 446-457 - Hsu-Chih Huang, Ming-Shaung Ju, Chou-Ching K. Lin:
A robust algorithm for removing artifacts in EEG recorded during FMRI/EEG study. 458-467 - Jaegyoon Ahn, Youngmi Yoon, Chihyun Park, Sanghyun Park:
CNV detection method optimized for high-resolution arrayCGH by normality test. 468-473 - Luiz Cláudio Demes da Mata Sousa, Pedro de Alcântara dos Santos Neto, Fernando da Fonseca de Souza, Semiramis Jamil Hadad do Monte:
LabSystem Gen, a tool for structuring and analyzing genetic data in histocompatibility laboratories. 474-479 - Tao Liu, Lingli Han, Zhangyu Yu, Dongju Zhang, Chengbu Liu:
Theoretical and experimental study on the molecular recognition of adrenaline by supramolecular complexation with crown ethers. 480-484 - Saeed Shakibfar, Claus Graff, Lars Holger Ehlers, Egon Toft, Jørgen K. Kanters, Johannes J. Struijk:
Assessing common classification methods for the identification of abnormal repolarization using indicators of T-wave morphology and QT interval. 485-491 - Matthew D. Sinnott, Paul W. Cleary, John W. Arkwright, Phil G. Dinning:
Investigating the relationships between peristaltic contraction and fluid transport in the human colon using Smoothed Particle Hydrodynamics. 492-503 - Wei Chen, Hao Lin:
Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine. 504-507
Volume 42, Number 5, May 2012
- André G. R. Balan, Agma J. M. Traina, Marcela X. Ribeiro, Paulo Mazzoncini de Azevedo Marques, Caetano Traina Jr.:
Smart histogram analysis applied to the skull-stripping problem in T1-weighted MRI. 509-522 - Myung-Eun Lee, Wanhyun Cho, Sun-Worl Kim, Soon-Young Park, Jong Hyo Kim:
Segmentation of interest region in medical volume images using geometric deformable model. 523-537 - Luis Guimarães, Natália F. Silva, Anderson Miyoshi, Maria P. C. Schneider, Artur Silva, Vasco Ariston de Carvalho Azevedo, Davi S. B. Brasil, Jerônimo Lameira, Cláudio Nahum Alves:
Structure modeling of a metalloendopeptidase from Corynebacterium pseudotuberculosis. 538-541 - Subhasish Saha, Aravindh Priyadharshini, Dharumadurai Dhanasekaran, Nooruddin Thajuddin, Saravanan Chandraleka, Govindasamy Chandramohan, Annamalai Panneerselvam:
Preclinical evaluation and molecular docking of 4-phenyl-1-Napthyl phenyl acetamide (4P1NPA) from Streptomyces sp. DPTB16 as a potent antifungal compound. 542-547 - Eleonora Atzeni, Luca Iuliano, Paolo Minetola, Alessandro Salmi:
Proposal of an innovative benchmark for accuracy evaluation of dental crown manufacturing. 548-555 - Zhao-Hui Qi, Jun Feng, Xiao-Qin Qi, Ling Li:
Application of 2D graphic representation of protein sequence based on Huffman tree method. 556-563 - Jingyan Wang, Yongping Li, Quanquan Wang, Xinge You, Jiaju Man, Chao Wang, Xin Gao:
ProClusEnsem: Predicting membrane protein types by fusing different modes of pseudo amino acid composition. 564-574 - Robert Salat, Kinga Salat:
New approach to predicting proconvulsant activity with the use of Support Vector Regression. 575-581 - Jin-Xing Liu, Chun-Hou Zheng, Yong Xu:
Extracting plants core genes responding to abiotic stresses by penalized matrix decomposition. 582-589 - Golnaz Baghdadi, Ali Motie Nasrabadi:
Comparison of different EEG features in estimation of hypnosis susceptibility level. 590-597 - Bashar Awwad Shiekh Hasan, John Q. Gan:
Hangman BCI: An unsupervised adaptive self-paced Brain-Computer Interface for playing games. 598-606 - Sjur Urdson Gjerald, Reidar Brekken, Lars Eirik Bø, Torbjørn Hergum, Toril A. Nagelhus Hernes:
Interactive development of a CT-based tissue model for ultrasound simulation. 607-613 - Joan Climent, Roberto A. Hexsel:
Particle filtering in the Hough space for instrument tracking. 614-623 - Xue Xiao, Dongguo Li, Lei Gao, Xia Li, Qianghu Wang, Shaojun Zhang, Zhicheng Liu:
Screening for cancer associated MiRNAs through co-gene, co-function and co-pathway analysis. 624-630 - Esmail M. Saber, G. Heydari:
Flow patterns and deposition fraction of particles in the range of 0.1-10 μm at trachea and the first third generations under different breathing conditions. 631-638
Volume 42, Number 6, June 2012
- José M. Urquiza, Ignacio Rojas, Héctor Pomares, Luis Javier Herrera, J. P. Florido, Olga Valenzuela, Maria del Mar Cepero:
Using machine learning techniques and genomic/proteomic information from known databases for defining relevant features for PPI classification. 639-650 - Ziye Yan, Yao Lu, Junhai Wen, Cuifen Li:
Super resolution SPECT reconstruction with non-uniform attenuation. 651-656 - Supriya D. Beedkar, C. N. Khobragade, Ragini G. Bodade, Aruna S. Vinchurkar:
Comparative structural modeling and docking studies of uricase: Possible implication in enzyme supplementation therapy for hyperuricemic disorders. 657-666 - Aleksandar Boskovic, Tatjana Loncar-Turukalo, Olivera Sarenac, Nina Japundzic-Zigon, Dragana Bajic:
Unbiased entropy estimates in stress: A parameter study. 667-679 - Tai Nguyen-Ky, Peng Wen, Yan Li, Mel Malan:
Measuring the hypnotic depth of anaesthesia based on the EEG signal using combined wavelet transform, eigenvector and normalisation techniques. 680-691 - Sandrine de Ribaupierre, Timothy D. Wilson:
Construction of a 3-D anatomical model for teaching temporal lobectomy. 692-696 - Syam B. Nair, Mahesh Kumar Teli, Hanumanthappa Pradeep, G. Krishnamurthy Rajanikant:
Computational identification of novel histone deacetylase inhibitors by docking based QSAR. 697-705 - Yinhui Deng, Yuanyuan Wang, Ping Chen, Jinhua Yu:
A hierarchical model for automatic nuchal translucency detection from ultrasound images. 706-713 - Yueyang Teng, Tie Zhang:
Three penalized EM-type algorithms for PET image reconstruction. 714-723
Volume 42, Number 7, July 2012
- Aravind Kailas, Chia-Chin Chong, Fujio Watanabe:
Simple statistical inference algorithms for task-dependent wellness assessment. 725-734 - Joselene Marques, Rabia Granlund, Martin Lillholm, Paola Pettersen, Erik B. Dam:
Automatic analysis of trabecular bone structure from knee MRI. 735-742 - Seyed Morteza Hosseini, Ahmad Reza Naghsh-Nilchi:
Medical ultrasound image compression using contextual vector quantization. 743-750 - Yuwen Sun, Allen C. Cheng:
Machine learning on-a-chip: A high-performance low-power reusable neuron architecture for artificial neural networks in ECG classifications. 751-757 - Trilce Estrada, Boyu Zhang, Pietro Cicotti, Roger S. Armen, Michela Taufer:
A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach. 758-771 - Hüseyin Demirel, H. Haldun Göktas, Bilgehan Erkal, Bünyamin Ciylan:
Prediction of the brain temperature from other body temperatures in hypothermia induced rats by using artificial neural networks. 772-777 - Pietro Amedeo Modesti, Luciano Massetti, M. Bamoshmoosh, Marzia Baldereschi, G. E. Cambi, Stefano Rapi:
The impact of fine-tuning of optical recognition system on database reliability. 778-783
Volume 42, Number 8, August 2012
- Di Zhang, Jiazhong He, Jianping Yao, Yuequan Wu, Minghui Du:
Noninvasive detection of mechanical prosthetic heart valve disorder. 785-792 - Femke De Backere, Hendrik Moens, Kristof Steurbaut, Kirsten Colpaert, Johan Decruyenaere, Filip De Turck:
Towards automated generation and execution of clinical guidelines: Engine design and implementation through the ICU Modified Schofield use case. 793-805 - Abdulhamit Subasi:
Medical decision support system for diagnosis of neuromuscular disorders using DWT and fuzzy support vector machines. 806-815 - Sung-Nien Yu, Ming-Yuan Lee:
Bispectral analysis and genetic algorithm for congestive heart failure recognition based on heart rate variability. 816-825 - You-Shyang Chen, Ching-Hsue Cheng:
Identifying the medical practice after total hip arthroplasty using an integrated hybrid approach. 826-840 - Kiwan Han, In-Young Kim, Jae-Jin Kim:
Assessment of cognitive flexibility in real life using virtual reality: A comparison of healthy individuals and schizophrenia patients. 841-847 - (Withdrawn) A novel real-time patient-specific seizure diagnosis algorithm based on analysis of EEG and ECG signals using spectral and spatial features and improved particle swarm optimization classifier. 848-856
- Karthik Seetharaman, Hamidreza Namazi, Vladimir V. Kulish:
Phase lagging model of brain response to external stimuli - modeling of single action potential. 857-862 - Seyed Saeid Khalafvand, E. Y. K. Ng, Liang Zhong, Tin-Kan Hung:
Fluid-dynamics modelling of the human left ventricle with dynamic mesh for normal and myocardial infarction: Preliminary study. 863-870
Volume 42, Number 9, September 2012
- R. P. Channing Rodgers:
In Memoriam, Robert Stevens Ledley (1926-2012). 871 - Lun-chien Lo, Ker-Cheng Lin, Yuan-Nian Hsu, Tsung-Po Chen, John Y. Chiang, Yung-fu Chen, Yin-Tso Liu:
Pseudo three-dimensional vision-based nail-fold morphological and hemodynamic analysis. 873-884 - Watshara Shoombuatong, Sayamon Hongjaisee, Francis Barin, Jeerayut Chaijaruwanich, Tanawan Samleerat:
HIV-1 CRF01_AE coreceptor usage prediction using kernel methods based logistic model trees. 885-889 - Bastikar Virupaksha, Gupte Alpana:
CoMFA QSAR models of camptothecin analogues based on the distinctive SAR features of combined ABC, CD and E ring substitutions. 890-897