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2020 – today
- 2023
[j11]Chen Li, Ting-Fung Chan
, Can Yang, Zhixiang Lin:
stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics. Bioinform. 39(10) (2023)- 2022
- [j10]Wenkai Han, Yuqi Cheng, Jiayang Chen, Huawen Zhong, Zhihang Hu, Siyuan Chen, Licheng Zong, Liang Hong, Ting-Fung Chan, Irwin King, Xin Gao, Yu Li:
Self-supervised contrastive learning for integrative single cell RNA-seq data analysis. Briefings Bioinform. 23(5) (2022)
2010 – 2019
- 2018
- [j9]Andrew Ching-Yuet To, David Ho-Ting Chu, Angela Ruoning Wang, Frances Cheuk-Yau Li, Alan Wai-On Chiu, Daisy Yuwei Gao, Chung Hang Jonathan Choi, Siu-Kai Kong, Ting-Fung Chan, King-Ming Chan, Kevin Y. Yip:
A comprehensive web tool for toehold switch design. Bioinform. 34(16): 2862-2864 (2018) - 2017
- [j8]Alden King-Yung Leung, Tsz-Piu Kwok, Raymond Wan, Ming Xiao, Pui-Yan Kwok, Kevin Y. Yip, Ting-Fung Chan:
OMBlast: alignment tool for optical mapping using a seed-and-extend approach. Bioinform. 33(3): 311-319 (2017) - [j7]Alden King-Yung Leung, Nana Jin, Kevin Y. Yip, Ting-Fung Chan:
OMTools: a software package for visualizing and processing optical mapping data. Bioinform. 33(18): 2933-2935 (2017) - [c4]Menglu Li, Siu-Ming Yiu, Ting-Fung Chan, Ernest T. Lam:
An iterative algorithm for de novo optical map assembly. BIBM 2017: 1952-1958 - 2016
- [c3]Menglu Li, Angel C. Y. Mak, Ernest T. Lam, Pui-Yan Kwok, Ming Xiao, Kevin Y. Yip, Ting-Fung Chan, Siu-Ming Yiu:
Towards a More Accurate Error Model for BioNano Optical Maps. ISBRA 2016: 67-79 - 2014
- [j6]Xihao Hu, Thomas K. F. Wong, Zhi John Lu, Ting-Fung Chan, Terrence Chi-Kong Lau, Siu-Ming Yiu, Kevin Y. Yip:
Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data. Bioinform. 30(8): 1049-1055 (2014) - [c2]Raymond Wan, Ting-Fung Chan, Jannifer Hiu-Kwan Man:
Query Modification through External Sources to Support Clinical Decisions. TREC 2014 - 2013
- [j5]Jing-Woei Li, Dan M. Bolser, Magnus Manske, Federico Manuel Giorgi, Nikolay Vyahhi, Björn Usadel, Bernardo J. Clavijo, Ting-Fung Chan, Nathalie Wong, Daniel R. Zerbino, Maria Victoria Schneider:
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Briefings Bioinform. 14(5): 548-555 (2013) - [j4]Jing-Woei Li, Raymond Wan, Chi-Shing Yu, Ngai Na Co, Nathalie Wong, Ting-Fung Chan:
ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution. Bioinform. 29(5): 649-651 (2013) - [j3]Yao Xin, Benben Liu, Biao Min, Will X. Y. Li, Ray C. C. Cheung, Anthony S. Fong, Ting-Fung Chan:
Parallel architecture for DNA sequence inexact matching with Burrows-Wheeler Transform. Microelectron. J. 44(8): 670-682 (2013) - 2011
- [j2]Shao-Ke Lou, Bing Ni, Leung-Yau Lo, Stephen Kwok-Wing Tsui, Ting-Fung Chan, Kwong-Sak Leung:
ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. Bioinform. 27(3): 421-422 (2011) - [j1]Shao-Ke Lou, Jing-Woei Li, Hao Qin, Aldrin Kay-Yuen Yim, Leung-Yau Lo, Bing Ni, Kwong-Sak Leung, Stephen Kwok-Wing Tsui, Ting-Fung Chan:
Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length. BMC Bioinform. 12(S-5): S2 (2011) - 2010
- [c1]Shao-Ke Lou, Jing-Woei Li, Hao Qin, Aldrin Kay-Yuen Yim, Leung-Yau Lo, Bing Ni, Kwong-Sak Leung, Stephen Kwok-Wing Tsui, Ting-Fung Chan:
Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length. BIBM 2010: 164-170
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