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ORCIDIWBBIO 2014: Granada, Spain
- Ignacio Rojas, Francisco M. Ortuño Guzman:
International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2014, Granada, Spain, April 7-9, 2014. Copicentro Editorial 2014, ISBN 978-84-15814-84-9
SS10: Effective Soft Computing Methods for Biomedical Signals
- Bekir Karlik, Sengul Bayrak Hayta:
Comparison Machine Learning Algorithms for Recognition of Epileptic Seizures in EEG. 1-12 - Jose Ignacio Aznarte, Sergio Iglesias-Parro, Antonio José Ibañez-Molina, Maria Felipa Soriano:
A new computational measure for detection of extrapyramidal symptoms. 13-22 - Shyan-Lung Lin, Yu-Zhe Tsai, Andy Liao:
The Optimization of Breathing Signals and Ventilatory Control with Nonlinear Respiratory Mechanics under Hypercapnia and Eucapnia. 23-33 - Yücel Koçyigit:
A Novel Feature Extraction Method for Heart Sounds Classification. 34-41 - Ayhan Yüksel, Tamer Ölmez:
Task Related and Spatially Regularized Common Spatial Patterns for Brain Computer Interfaces. 42-53 - Berat Dogan, Tamer Ölmez:
Fuzzy Clustering of ECG Beats Using a New Metaheuristic Approach. 54-65
SS9: Biomaterials in Biomedicine: Computational approaches
- Razvan Ghinea, Oscar E. Pecho, Luis Javier Herrera, Ana Maria Ionescu, Juan de la Cruz Cardona, Maria Purificacion Sanchez Sanchez, Rade D. Paravina, Maria del Mar Pérez:
Predictive algorithms for determination of reflectance data from quantity of pigments within experimental dental resin composites. 66-76 - Guillermo Rus, Nicolas Bochud, Juan Manuel Melchor Rodriguez, Laura Peralta, Juan Chiachío, Manuel Chiachío, Antonio Gómez:
Ultrasonic monitoring of artificial tissue mechanical properties in biorreactor. 77-83 - Rebeca García-Fandiño, Juan Outeiral, Saulo Vazquez, Juan R. Granja:
Influence of the Length in Biomimetic Ion Channels Based on Derivatized ?, ?-Self Assembled Peptide Nanotubes. A Molecular Dynamics study. 84 - Laura Peralta, Guillermo Rus, Nicolas Bochud, Juan Manuel Melchor Rodriguez, Juan Chiachío, Manuel Chiachío:
FDTD simulations for ultrasound propagation in a 2-D cervical tissue model. 85-96 - Juan Manuel Melchor Rodriguez, Guillermo Rus, Nicolas Bochud, Laura Peralta, Juan Chiachío, Manuel Chiachío, Antonio Gómez:
Model-based probability of detection of pathologies in soft tissue. 97-107 - Juan Chiachío, Manuel Chiachío, Guillermo Rus-Carlborg, Nicolas Bochud, Laura Peralta, Juan Manuel Melchor Rodriguez:
Information-theory approach to model class assessment for tissue-engineered cultures consistence evolution. 108
SS1: Multi-biomarker and informatics in cancer diagnosis
- Yaping Tian, Chuanxin Wang, Liming Cheng, Peng Zhang, Lin Guo, Wanli Liu, Zhongying Zhang, Yanchun Huang, Qishui Ou, Xinyu Wen, Yuelei Xing, Guixi Zheng, Ziyong Sun, Huijun Li, Aimin Zhang, Ying Chen, Wen Liu, Huiming Ye, Yi Xu, Yishan Huo, Jing Chen:
The mathematical models of serum HE4 and CA125 combined application to improve the pelvic tumor differential diagnosis rate. 109-115 - Clare Coveney, Dong-Ling Tong, David J. Boocock, Robert C. Rees, Graham R. Ball:
Exploration of ovarian cancer micro array data focus on gene expression patterns relevant to survival using artificial neural networks. 116-123 - Tai Feng Hsu, Ming Yii Huang, Hsueh Chiao Liu, Jia Yuan Chang, Jian Jhang Huang, Shiu Ru Lin:
High efficiency for activated KRAS detection from peripheral blood using weighted enzymatic gene chip array method. 124-134 - Martin Tabakov, Marta Tabakov, Halina Kwasnicka, Pawel Kozak, Bartosz Pula:
HER-2/neu Breast Cancer Diagnosis Procedure Based on Histopathology Image Analysis. 135-146
SS6: ePathology - Realities and Perspectives
- Thomas Schrader, Anne Nadolny, Robert Piduch, Peter Hufnagl:
Image Quality Assessment in Digital Pathology - The Analysis of Background in Whole Slide Images. 147 - David Ameisen, Christophe Deroulers, Valérie Perrier, Fatiha Bouhidel, Maxime Battistella, Luc Legrès, Anne Janin, Philippe Bertheau, Jean-Baptiste Yunès:
Automatic image quality assessment in digital pathology: from idea to implementation. 148-157 - Ichiro Mori, Takashi Ozaki, Yasuteru Muragaki, Yoshiyuki Osamura:
Web-based remote diagnosis system using virtual slide for routine pathology slides, analysis of discrepancies between virtual and real microscopic diagnosis. 158-159 - Cristina Callau, Marylène Lejeune, Anna Korzynska, Marcial García-Rojo, Gloria Bueno García, Ramón Bosch, Joaquín Jaén, Guifre Orero, Maria Teresa Salvadó, Carlos López:
Evaluation of cytokeratin-19 in breast cancer tissue samples: a comparison of automatic and manual evaluations of scanned tissue microarray cylinders. 160-172 - Ekaterine Kldiashvili, Archil Burduli, Gocha Ghortlishvili, Dodo Agladze, Ivan Sheklashvili:
The medical information system and its application for quality assurance programs in cytology - Georgian experience. 173-182
SS7: Modelling of cellular pathways and disease
- Jean-Marc Schwartz, Peter Neal Taylor:
In silico prediction of elementary mode fluxes. 183-191 - Michelle Hussain, Benjamin Stutchbury, Kun Tian, Rengül Çetin-Atalay, Jean-Marc Schwartz, Marija Krstic-Demonacos:
Applications of p53 interactome analysis to personalised drug discovery. 192-203 - Ioly Kotta-Loizou:
Evolutionary and functional studies on the novel Hepatitis C virus core+1/ARF protein. 204
Biomedical Data Mining
- Adila Merabti, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Using Biomedical Terminologies to extract Noun Phrases for managing knowledge evolution. 205-216 - Troels Andreasen, Henrik Bulskov, Jørgen Fischer Nilsson, Per Anker Jensen:
Computing Pathways in Bio-Models Derived from Bio-Science Text Sources. 217-226 - Julien Grosjean, Lina Fatima Soualmia, Khedidja Bouarech, Clément Jonquet, Stéfan Jacques Darmoni:
Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal ? 227-237
SS2: Discovery of non-coding and structured RNAs
- Walter N. Moss:
Analyses of non-coding RNAs generated from the Epstein-Barr virus W repeat region. 238-252 - Alfredo Berzal-Herranz, Cristina Romero-Lopez:
New frontiers in the investigation of structural functional RNA domains in viral genomes. Understanding the hepatitis C virus (HCV). 253-271 - Alain Laederach:
Identifying functional SNVs that map to non-coding regions of the genome and alter RNA Structure. 272 - Alexander P. Gultyaev, René C. L. Olsthoorn, Monique Spronken, Ron Fouchier:
Detection of structural constraints and conformational transitions in the influenza virus RNA genome using structure predictions and mutual information calculations. 273-284 - Jan Gorodkin:
In silico discovery of de novo structured RNAs in genomic and transcriptomic sequence. 285 - Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler:
Comparative Detection of Processed Small RNAs in Archaea. 286-297
SS14: Better Oncology Treatment and Patient Outcomes by Using Therapy-Related Symptom Checklists (TRSC/TRSC-C) and a Computerized Two-Way Communication System
- Arthur R. Williams, David D. Williams, Phoebe D. Williams:
The Development and Application of an Oncology Therapy-Related Symptom Checklist for Adults (TRSC) and Children (TRSC-C). 298-307 - Phoebe D. Williams, Ubolrat Piamjariyakul, Jenna Degennaro:
The TRSC-C and Childhood Leukemia in Thailand and the USA: Symptom Occurrence/Severity and Care Strategies for Symptom Relief. 308-314 - Phoebe D. Williams, Leticia S. Lantican, Julia O. Bader, Daniela Lerma:
The TRSC and Symptom Monitoring, Alleviation, and Self-Care among Mexican-Americans during Outpatient Cancer Treatments. 315-320 - Farrokh Alemi, Hosai Hesham, Arthur R. Williams, Phoebe D. Williams, Blaine Donley, Raya E. Kheirbek:
Computers that Show Recognition of Patients' Symptoms. 321-329
High Performance for Sequence Analysis
- Xin Chang, Fernando A. Escobar, Carlos Valderrama, Vincent Robert:
Exploring Sequence Alignment Algorithms on FPGA-based Heterogeneous Architectures. 330-341 - Pedro Seoane, Rosario Carmona, Rocío Bautista, Darío Guerrero-Fernández, Manuel Gonzalo Claros:
AutoFlow: an easy way to build workflows. 342-349 - Christian Theil Have, Søren Mørk:
A Probabilistic Genome-Wide Gene Reading Frame Sequence Model. 350-361 - José Salavert Torres, Andrés Tomás, Ignacio Medina, Ignacio Blanquer:
Inexact Sequence Mapping Study Cases: Hybrid GPU Computing and Memory Demanding Indexes. 362-373
SS11: Chaperone Therapy for Protein Misfolding Disorders with Brain Dysfunction
- Yoshiyuki Suzuki:
Concept and Development of Chaperone Therapy for Protein Misfolding Diseases. 374-384 - Seiichiro Ogawa, Shinichi Kuno, Katsumi Higaki, Atsushi Takahashi, Eiji Nanba:
Design and Synthesis of Bioactive Valienamine-type Chaperones. 385-388 - Jose M. Garcia Fernandez:
Pharmacological Chaperones by Design. 389 - Juan Aymami, Xavier Barril, Aida Delgado, Marc Reves, Rodolfo Lavilla, Katsumi Higaki, Ana Maria Garcia-Collazo, Laura Rodriguez-Pascau, Elena Cubero, Pilar Pizcueta, Marc Martinell:
Enzyme Enhancement Therapy through non-competitive pharmacological chaperones. 390-395 - Toshiyuki Shimizu:
Structural basis of pharmacological chaperoning for human ß-galactosidase. 396 - Eiji Nanba, Katsumi Higaki:
Identification and characterization of chaperone compounds for human beta-galactosidase deficiency. 397
SS8: Integration of data, methods and tools in biosciences
- Vesna Pajic, Gordana Pavlovic-Lazetic, Dragana Dudic, Dragica Radovanovic, Jelena Kozoderovic:
Integration of data in biosciences. 398-405 - Cândida G. Silva, Pedro Carreiras, Elsa Henriques, Carlos J. V. Simões, Rui M. M. Brito:
A Machine Learning Approach to Enhance Scoring Performance in Docking-Based Virtual Screening Experiments: COX-1 as a Case Study. 406-414 - Chloé Cabot, Julien Grosjean, Romain Lelong, Arnaud Lefebvre, Thierry Lecroq, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Omic Data Modelling for Information Retrieval. 415-424 - Daniele Passeri, Arianna Morozzi, Keida Kanxheri, Andrea Scorzoni:
Numerical Simulation of ISFET Structures for BioSensing Devices with TCAD Tools. 425-435 - Gordana Pavlovic-Lazetic, Vesna Pajic, Nenad S. Mitic, Jovana J. Kovacevic, Milos V. Beljanski:
Mining Associations for Organism Characteristics in Prokaryotes - an Integrative Approach. 436-450 - Francisco Vera Voronisky, Ansel Y. Rodríguez-González, Iván Olmos Pineda, Patricia Sánchez, Candelario Vázquez, Jesús A. González:
LPS: a strategy for the generation of longer DNA sequence fragments from short reads. 451-462 - Joana Sousa, Rui M. M. Brito, Jorge Salvador, Cândida G. Silva:
In Search of Predictive Models for Inhibitors of 5-alpha Reductase 2 Based on the Integration of Bioactivity and Molecular Descriptors Data. 463-472 - Mihaela Marcella Vida, Oana Sorina Lupse, Lacramioara Stoicu-Tivadar:
Assisted prescription for improving treatments in Obstetrics-Gynecology Department. 473-483 - Anna Papiez, Paul Finnon, Christophe Badie, Simon Bouffler, Joanna Polanska:
Integrating Expression Data from Different Microarray Platforms in Search of Biomarkers of Radiosensitivity. 484-493
SS4: High Performance Computing in Bioinformatics
- Horacio Emilio Pérez Sánchez, José M. Cecilia, Ivan Merelli:
The role of High Performance Computing in Bioinformatics. 494-506 - Haider Banka, Suresh Dara:
Hamming Distance based Binary PSO for Feature Selection and Classification from high dimensional Gene Expression Data. 507-514 - Tomas Koutny:
Experience with Lamport Clock Ordered Events with Intel Threading Building Blocks in a Glucose-Level Prediction Software. 515-526 - Alberto Gil, Gabriel Caffarena, David G. Márquez, Abraham Otero:
Hermite Polynomial Characterization of Heartbeats with Graphics Processing Units. 527-538 - Carlos Riveros, Manuel Ujaldon, Pablo Moscato:
Entropy-based High Performance Computation of Boolean SNP-SNP Interactions Using GPUs. 539-550 - Ivan Merelli, Ettore Mosca, Daniele Cesini, Elisabetta Ronchieri, Luciano Milanesi:
Evaluating mixed HTC/cloud approaches for parameter sweep applications in systems biology. 551-562 - Abel Carrión, Ignacio Blanquer, Miguel Caballer, Cristina Y. González, Ignacio Medina:
Design of a Generic Architecture for executing Bioinformatics Workflows on Distributed Infrastructures. 563-574 - Daniel Rodrigo Ferraz Bonetti, Horacio Pérez Sánchez, Alexandre C. B. Delbem:
An Efficient Solvent Accessible Surface Area calculation applied in Ab Initio Protein Structure Prediction. 575-578 - Jianbin Fang, Ana Lucia Varbanescu, Baldomero Imbernon, José M. Cecilia, Horacio Emilio Pérez Sánchez:
Parallel Computation of Non-Bonded Interactions in Drug Discovery: Nvidia GPUs vs. Intel Xeon Phi. 579-588 - Lidia Kuan, João Neves, Frederico Pratas, Pedro Tomás, Leonel Sousa:
Accelerating Phylogenetic Inference on GPUs: an OpenACC and CUDA comparison. 589-600 - Shyam R. Badu, Roderik Melnik, Maxim V. Paliy, Sanjay Prabhakar, Ali Sebetci, Bruce A. Shapiro:
High Performance Computing Studies of RNA Nanotubes. 601-607
SS3: Biological Knowledge Visualization
- Roger Marshall:
Generalized macro level models of amino acid sequences using passive electrical circuits. 608-622 - Martha Ivón Cárdenas, Alfredo Vellido, Caroline König, René Alquézar, Jesús Giraldo:
Exploratory Visualization of Misclassified GPCRs from their transformed unaligned sequences using manifold learning techniques. 623-630 - Graeme Taylor, Hongbin Xu, Andrew Syrett, Steffany A. L. Bennett:
Mapping regional changes in the glycerophosphocholine second messenger lipidome following brain injury using CIRCOS. 631-641 - Stephen Fai, Katie Wurts, Andrew Syrett, Brendan Trickey, Nico Valenzuela, Steffany A. L. Bennett:
Multi-dimensional anatomical representation: A volumetric comparison of the C57BL/6 and N3 C57BL/6 x 129/Sv mouse brain modelled from serial section using Autodesk Maya. 642-659
Bioinformatics Tools and Databases
- Pablo Pareja-Tobes, Alexey Alekhin, Evdokim Kovach, Marina Manrique, Eduardo Pareja, Raquel Tobes, Eduardo Pareja-Tobes:
Bio4j: bigger, faster, leaner. 660 - Cristian Alejandro Rojas Quintero, Nelson Enrique Vera Parra, Jose Nelson Perez Castillo:
Massive Automatic Functional Annotation - MAFA. 661-669 - Graeme S. V. McDowell, Alexandre P. Blanchard, Daniel Figeys, Stephen Fai, Steffany A. L. Bennett:
Advancing Lipidomic Bioinformatic Technologies: Visualization and Phospholipid Identification (VaLID) version 3.0. 670-680 - Evdokim Kovach, Alexey Alekhin, Marina Manrique, Pablo Pareja-Tobes, Eduardo Pareja, Raquel Tobes, Eduardo Pareja-Tobes:
MG7: A fast horizontally scalable tool based on cloud computing and graph databases for microbial community profiling. 681
SS13: Computational analysis of gene regulatory elements with next-gen sequencing data
- Giovanna Ambrosini, René Dreos, Philipp Bucher:
Principles of ChIP-seq Data Analysis Illustrated with Examples. 682-694 - René Dreos, Giovanna Ambrosini, Philipp Bucher:
Transcription factor binding and nucleosome positioning are alternative pathways for transcription start site selection in eukaryotic promoters. 695-706 - Marta Iwanaszko, Patryk Janus, Tomasz Stokowy, Piotr Widlak, Marek Kimmel:
Changes in heat shock duration influence regulatory schemes of HSF1 activity. 707-714 - Mohammad Al Bataineh, Lun Huang, Guillermo E. Atkin:
Transcription Factor Binding Site Detection Algorithm Using Distance Metrics Based on a Position Frequency Matrix Concept. 715-726
Gene Expression and Microarrays
- Firdous Khan, Mushal Allam, Marius Tincho, Ashley Pretorius:
Implications of RBBP6 in various types of cancer. 727-737 - Michal Marczyk, Lukasz Krol, Joanna Polanska:
Automatic detection of outlying microarrays using multi-array quality metrics. 738-746 - Sidahmed Benabderrahmane:
Formal Concept Analysis and Knowledge Integration for Highlighting Statistically Enriched Functions from Microarrays Data. 747-758
Biomedical Engineering and eHealth Applications
- Oresti Baños, Juan Manuel Galvez, Miguel Damas, Alberto Guillén, Luis Javier Herrera, Héctor Pomares, Ignacio Rojas:
Evaluating the effects of signal segmentation on activity recognition. 759-765 - María Luisa Martín Ruiz, Miguel Ángel Valero Duboy, Iván Pau de la Cruz, Maria Peñafiel Puerto, Carmen Torcal Loriente:
A Supervised Cooperative Learning System for Early Detection of Language Disorders. 766-777 - Franciszek Binczyk, Rafal Tarnawski, Joanna Polanska:
Improvement in the accuracy of Nuclear Magnetic Resonance spectrum analysis by automatic tuning of phase correction algorithms. 778-788 - Hernando González, Carlos Arizmendi, Beatriz F. Giraldo:
Analysis of Respiratory Flow Signals to Identify Success of Patients on Weaning Trials. 789-797 - Vanathi Gopalakrishnan, Prahlad G. Menon, Shobhit Madan:
A novel framework to enhance scientific knowledge of cardiovascular MRI biomarkers and their application to pediatric cardiomyopathy classification. 798-809
SS15: Computational MRI: Theory, Dynamics and Applications
- Moses E. Emetere, Omotayo Bamidele Awojoyogbe, Uno E. Uno, Kasim Isah, Michael Oluwaseun Dada:
Resolving the enhanced flow parameters for an in-depth analysis of the MRI-Neuroimaging. 810-819 - Omotayo Bamidele Awojoyogbe, Michael Oluwaseun Dada, Adewale Omoniyi Adesola:
Computational Magnetic Resonance Imaging based on Bloch NMR Flow Equation and Bessel Functions. 820-841 - Michael Oluwaseun Dada, Omotayo Bamidele Awojoyogbe:
Computational Phase Constrast Magnetic Resonance Imaging based on Legendre Polynomials. 842-859 - Michael Oluwaseun Dada, Omotayo Bamidele Awojoyogbe, Simona Baroni:
Computational model of NMR Molecular Dynamics for the Analysis Blood Brain Barrier. 860-877 - Foued Derraz, Antonio Pinti, Laurent Peyrodie, Miloud Boussahla, Hechmi Toumi, Patrick Hautecoeur:
Multiple Sclerosis lesion segmentation using Active Contours model and adaptive outlier detection method. 878-889
Computational Proteomics and Biological Systems
- Nicolas Kaspric, Brigitte Picard, Matthieu Reichstadt, Jeremy Tournayre, Muriel Bonnet:
Protein function easily investigated by genomics data mining using the ProteINSIDE web service. 890-902 - Ozlem Ozbudak, Zümray Dokur:
Protein Fold Classification using Kohonen's Self-Organizing Map. 903-911 - Davide Chiarugi, Moreno Falaschi, Diana Hermith, Carlos Olarte:
A framework for modelling spatially dependent interactions of biological systems in CCP. 912-923 - Gustavo Santos-García, Javier De Las Rivas, Carolyn L. Talcott:
Rewriting Logic and Symbolic Systems Biology applied to EGF Signaling Pathway. 924-935
Ethical Principles in Biotechnology and Bioengineering
- Robin Attfield:
Biotechnology, Biomedicine and the Precautionary Principle. 936-940
High Performance Bioinformatics for Healthcare and Diseases
- Antonio Rodriguez-Jimenez, Enrique J. Carmona:
Blood Vessel Segmentation in Retinal Images based on Local Binary Patterns and Evolutionary Neural Networks. 941-949 - Carlos Oscar Sánchez Sorzano, Javier Vargas, José Miguel de la Rosa-Trevín, Airen Zaldívar-Peraza, Joaquín Otón, Vahid Abrishami, Ignacio Foche, Roberto Marabini, Gabriel Caffarena, José María Carazo:
Outlier detection for single particle analysis in Electron Microscopy. 950-959 - Eduardo Garcia de La Cueva, Miguel Mateo de La Puente, Alessandro Deideri, Ana Iriarte, Carlos Oscar Sánchez Sorzano, Gabriel Caffarena:
2D and 3D Alignment for Electron Microscopy via Graphics Processing Units. 960-971 - José Pedro Cerón-Carrasco, Javier Cerezo, Jose Zuñiga, Alberto Requena, Julia Contreras-Garcia, Sonali Chavan, Miguel Manrubia-Cobo, Baldomero Imbernon, José M. Cecilia, Horacio Emilio Pérez Sánchez:
Application of parallel blind docking with BINDSURF for the study of platinum derived compounds as anticancer drugs. 972-976
miRNA Regulation Networks
- Liliana Ironi, Diana X. Tran:
Model-based design of synthetic networks. 977-988 - Vicky Dritsou, Pantelis Topalis, Elvira Mitraka, Emmanuel Dialynas, Christos Louis:
miRNAO: An Ontology Unfolding the Domain of microRNAs. 989-1000 - Marco Grzegorczyk, Andrej Aderhold, V. Anne Smith, Dirk Husmeier:
Inference of Circadian Regulatory Networks. 1001-1014 - Gianvito Urgese, Giulia Paciello, Claudio Isella, Enzo Medico, Enrico Macii, Elisa Ficarra, Andrea Acquaviva:
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. 1015-1026
Computational Approaches for Genomics and NGS
- John Healy, Desmond Chambers:
An Integrated Approach to Comparative Assembly. 1027-1038 - Austin W. T. Chiang, Grace Shaw, Ming-Jing Hwang:
Hkera, a human transcriptome partitioner. 1039 - Andrei Alic, Andrés Tomás, José Salavert Torres, Ignacio Medina, Ignacio Blanquer:
Robust Error Correction for De Novo Assembly via Spectral Partitioning and Sequence Alignment. 1040-1048 - José A. Seoane, Ian N. M. Day, Colin Campbell, Juan P. Casas, Tom R. Gaunt:
Using a Random Forest proximity measure for variable importance stratification in genotypic data. 1049-1060
SS16: Bioinformatical Approaches to Disordered Proteins
- Bálint Mészáros, István Simon, Zsuzsanna Dosztányi:
Predicting functional sites in disordered proteins - implications in disease. 1061 - Peter Tompa:
Dynamic approaches to structural ensembles of intrinsically disordered proteins. 1062 - Bora Uyar, Toby J. Gibson:
The Roles of Short Linear Motifs in Human Diseases. 1063
SS18: Stochastic Modelling of Biological Systems
- Jacek Wabik, Mateusz Kurcinski, Andrzej Kolinski:
Flexible docking of the fragment of the troponin I to the troponin C. 1064-1073 - Alex Aussem, Pascal Caillet, Zara Klemm, Maxime Gasse, Anne-Marie Schott, Michel Ducher:
Analysis of risk factors of hip fracture with causal Bayesian networks. 1074-1085 - Gregorio Rubio, Belén García-Mora, Cristina Santamaría, Francisco Santonja:
Incorporating covariates in a flowgraph model for bladder carcinoma. 1086-1096
Poster Session
- Victor Kislukhin:
Shape of a dilution curve as the consequence of stochasticity within microcirculation. 1097-1103 - Om Prakash Sharma, Muthuvel Suresh Kumar:
Inhibition of Wb-iPGM using analogues of Clorsulon and co-administration with DEC for bancroftian filariasis treatment. 1104-1121 - Hemanth Naick B., Om Prakash Sharma, Muthuvel Suresh Kumar, Baskaran Rajasekaran:
Identification of Potent Inhibitors for Resistant Form of Chronic Myelogenous Leukaemia (CML). 1122-1144 - Ana Debón, Patricia Carracedo, Inmaculada Molina:
Comparison of pregnancy predictive models applied to women who received IVF/ICSI in Valencia (Spain) using ROC curves. 1145-1153 - Yuh-Jyh Hu, Shun-Chien Lin, Yu-Lung Lin:
Applying Stacked and Cascade Generalizations to B-cell Epitope Prediction. 1154-1163 - Cristina Stolojescu-Crisan, Stefan Holban:
An Interactive X-Ray Image Segmentation Technique for Bone Extraction. 1164-1171 - Dan Pu, Jing Chen, Pengfeng Xiao:
Sequencing by Ligation with Double-Labeled Fluorescent Probes. 1172-1178 - Alina Frolova, Bartek Wilczynski:
Fast Parallel Bayesian Networks Reconstruction with BNFinder. 1179-1184 - Jalel Akaichi, Marwa Manaa:
Patient Trajectory Modeling and Analysis. 1185-1189 - Michael V. LeVine, Jose Manuel Perez-Aguilar, Harel Weinstein:
N-body Information Theory (NbIT) Analysis of Rigid-Body Dynamics in Intracellular Loop 2 of the 5-HT2A Receptor. 1190-1201 - Patricia Rodriguez-Tomé, Carla Melis, Raffaella Ardau, Caterina Chillotti, Maria Del Zompo, Alessio Squassina, Giovanni Severino:
Doctors and researchers: integrating data for bipolar disorder studies. 1202 - Julia Kar, Andrew Knutsen, Kevin Kulshrestha, Brian Cupps, Michael K. Pasque:
An Effective 3-Dimensional Regional Myocardial Strain Computation Method with Displacement ENcoding with Stimulated Echoes (DENSE) in Dilated Cardiomyopathy Patients and Healthy Subjects. 1203-1206 - Oliver Gloger, Volkmar Liebscher, Klaus D. Tönnies, Henry Völzke:
Fully Automatic Renal Parenchyma Volumetry in LDA-based Probability Maps Using Variational Outer Cortex Edge Alignment Forces. 1207-1218 - Min Nie, Guang Yang:
Positioning Method Based on Infrared Spectrum Detection of Neurotransmitters for Electrical Nerve Stimulation after Spinal Cord Injury. 1219-1228 - Vladimír Rogalewicz, Ivana Jurickova:
Specificities of Medical Devices Affecting Health Technology Assessment Methodology. 1229-1234 - Mohd Zulfaezal Che Azemin, Fadilah Abd Hamid, Mohd Izzuddin Bin Mohd Tamrin, Anang Hudaya Muhamad Amin:
Supervised Retinal Vessel Segmentation Based on Neural Network Using Broader Aging Dataset. 1235-1242 - Chang-Hyun Jang, Dong-Min Kim:
Label-free detection of viruses using liquid crystals on a polymeric surface with periodic nanostructures. 1243 - Andoni Beristain, Alessandro De Mauro, Koen Van De Weyer, Dominique Segers:
Voice controller for Image Guided Surgery and per-sonalized Interactive Visualisation. 1244-1253 - Albert Vilamala, Lluís Belanche:
Improving Stability of Feature Selection for Brain Tumour Diagnosis Using 1H-MRS Data. 1254-1265 - Josef Danek, Tatjana Dostálová, Milan Hubácek, Nima Mahdian:
Stress-strain analyses of the jaws with multiple keratocysts before and after surgery. 1266-1277 - Beatriz López, Francisco Gamero, Jordi Coll, Natalia Mordvaniuk, Judit Bassols, Eva Bargallo, Borja Guarch, Abel López-Bermejo:
Intelligent System for Premature Babies Healthcare at Home based on Case-based Reasoning. 1278-1289 - Herbert Süße, Wolfgang Ortmann, Janin Lautenschläger, Christian Lautenschläger, Marco Körner, Julian Grosskreutz, Joachim Denzler:
Quantitative Analysis of Pathological Mitochondrial Morphology in Neuronal Cells in Confocal Laser Scanning Microscopy Images. 1290-1301 - Fermín Segovia, Ignacio Álvarez Illán, Diego Salas-Gonzalez, Francisco Jesús Martínez-Murcia, Christophe Phillips, Carlos García Puntonet, Javier Ramírez Perez de Inestrosa, Juan Manuel Górriz Sáez:
PETRA: Multivariate analyses for neuroimaging data. 1302-1312 - Magdalena Bajgrowicz, Jerzy Detyna, Marek Langner:
Liposomes in polymer matrix. Stability of liposomes in PEG 400 and PEG 8000 solutions. 1313-1322 - Dragana Nikolic, Anna Barney, Vanda Nemes, Peter Garrard:
Motif discovery in speech: application to monitoring Alzheimer's disease. 1323-1324 - Peter Peters, Frank Delbressine, Loe M. G. Feijs:
Designing preterm neonatal cyanosis simulation. 1325-1337 - Marcin Pacholczyk, Karolina Smolinska, Marta Iwanaszko, Marek Kimmel:
Computational approach for modeling and testing NF-kB binding sites. 1338-1346 - Gianvito Urgese, Giulia Paciello, Andrea Acquaviva, Elisa Ficarra, Mariagrazia Graziano, Maurizio Zamboni:
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimization. 1347-1358 - Vladimír Rogalewicz, Ivana Jurickova:
Multiple-criteria decision making: application to medical devices. 1359-1372 - Ivana Jurickova, Pavla Hejmova:
Barriers to implementation of a clinical information system in an emergency department. 1373-1388 - Ivana Jurickova, Ales Kraina:
Case study: Mobile X-ray equipment selection for a traumatology department using value engineering and multi-criteria decision methods. 1389-1402 - Zina Nakhla, Kaouther Nouira:
Automatically building database from biological ontology. 1403-1411 - Alexey Alekhin, Evdokim Kovach, Pablo Pareja-Tobes, Marina Manrique, Eduardo Pareja, Raquel Tobes, Eduardo Pareja-Tobes:
Statika: managing cloud resources, bioinformatics tools and data. 1412-1413 - Evdokim Kovach, Alexey Alekhin, Marina Manrique, Pablo Pareja-Tobes, Eduardo Pareja, Raquel Tobes, Eduardo Pareja-Tobes:
Nispero: a cloud-computing based Scala tool specially suited for bioinformatics data processing. 1414-1415 - Sylwia Olsztynska-Janus, Barbara Kmiecik, Bartosz Krawczyk, Malgorzata Komorowska:
Determination of changes in plasma structure during extracorporeal circulation - studies by ATR-FTIR spectroscopy and machine learning methods. 1416-1417 - Ganna Raboshchuk, Climent Nadeu, Blanca Muñoz Mahamud, Ana Riverola de Veciana, Santiago Navarro Hervas:
Acoustic Study of a Neonatal Intensive Care Unit: Preliminary Results. 1418-1426 - Mojtaba Bandarabadi, Jalil Rasekhi, César Alexandre Teixeira, António Dourado:
Optimal preictal period in seizure prediction. 1427-1433 - Imen Messaoudi, Afef Elloumi Oueslati, Zied Lachiri:
Revealing Helitron signatures in Caenorhabditis elegans by the Complex Morlet Analysis based on the Frequency Chaos Game Signals. 1434-1444 - Pablo C. Gomes de Sa, Siomar de Castro Soares, Adonney A. de Oliveira Veras, Anne C. Pinto, Luis Guimarães, Vasco Ariston de Carvalho Azevedo, Artur Silva, Rommel Ramos:
The impact of the quality filter for RNA-Seq data over differential expression profile. 1445-1449 - Tahar Omari, Fethi Bereksi-Reguig:
An Automatic Wavelet Selection Scheme for Heart Sounds Denoising. 1450-1462 - Karolina Grzechnik, Tadeusz Burczynski:
Digital Human Model and Motion Capture Techniques for Home Kinesitherapy. 1463-1470 - Krzysztof Puszynski, Katarzyna Jonak, Monika Kurpas, Patryk Janus, Katarzyna Szoltysek:
Analysis of ATM signaling pathway as an activator of p53 and NF-kB regulatory modules and the role of PPM1D. 1471-1482 - Kevin Mader, Leah-Rae Donahue, Ralph Müller, Marco Stampanoni:
High-throughput, Scalable, Quantitative, Cellular Phenotyping using X-Ray Tomographic Microscopy. 1483-1498 - Hanen Faiez, Jalel Akaichi:
Pervasive System for Searching the Appropriate Road: A Mobile Physician on Road Network Case Study. 1499-1510 - Anton L. Zernov, E. V. Ivanova, Konstantin V. Shaitan:
The experimental model of lysozyme sustained release based on poly(3-hydroxybutyrate)-poly(ethylene glycol)/hydroxyapatite microparticles. 1511-1519 - I. I. Zharkova, E. A. Akulina, N. V. Andreeva, Konstantin V. Shaitan:
The experimental model of mesenchymal stem cells growth and differentiation based on application of porous scaffold from bacterial origin poly(3-hydroxybutyrate)-poly(ethylene glycol). 1520-1526 - Wided Oueslati, Jalel Akaichi:
Trajectory data warehouse modeling based on a Trajectory UML profile: Medical example. 1527-1538 - Hela Limam, Jalel Akaichi:
A semantic cache for queries optimization of Health care services communities. 1539-1553 - Usman Iqbal, Yu-Chuan Li:
Infectious disease risk from anti-psychotic drug use: A population-based study. 1554 - Sidrah Anjum, Attya Bhatti, Asma Gul:
In-silico approaches to sequence and structure based scrutiny of nonsynonymous SNPs and synteny of ACAA2 for its implicated role in metabolomics. 1555-1567 - Li Guo, Yang Zhao, Sheng Yang, Hui Zhang, Feng Chen:
An Integrative Analysis of ncRNA-mRNA Using Co-expression Network to Discover Potential Contributions of Coding-non-coding RNA Clusters. 1568-1573 - Paolo Paradisi, Davide Chiarugi:
Biochemical Reactions as Renewal Processes: the case of mRNA Degradation. 1574-1576 - Simone De Panfilis, Carlo Moroni, Fabrizio Pompili, Giorgio Parisi, Rosario Cassone:
Multi-point accelerometric detection and principal component analysis of heart sounds. 1577 - Bouabida Zohra, Hadj Slimane Zinne Eddine, Fethi Bereksi-Reguig:
A New Algorithm for Fetal QRS Detection in Abdominal Recordings. 1578-1585 - Praveen Sethupathy:
Transcriptomic analysis of human liver identifies a novel class of regulatory RNAs in chronic viral hepatitis and associated cancer. 1586 - Samrat Adhikari, Samudra Sutradhar, Nangkyntiewbor Jungai, Bikash Thakuria, Gopesh Paul:
Docking analysis and catalytic site prediction of azoreductase in E. coli, with a wide range of industrially important azodyes. 1587-1599 - C. Sudandiradoss, Martin Petrek:
Computational docking analysis on selective inhibition and binding affinity of synthetic inhibitors towards Matrix Metalloproteinase (MMPs) isoforms. 1600 - Monalise Berbert, Carlos Thomas, Rogerio Marczak:
Cheek Force: A Device for Quantitative Evaluation. 1601 - S. M. Abdullah Al-Mamun:
A performance comparison between conventional SSVEP and Emokey based Emotiv EPOC matrix speller. 1602 - Lukasz Krol, Ghazi Alsbeih, Christophe Badie, Joanna Polanska:
Impact of missing genotype imputation on the power of Genome Wide Association Studies. 1603-1614 - Yassene Mohammed, Dominik Domanski, Angela M. Jackson, Derek Smith, André M. Deelder, Magnus Palmblad, Christoph H. Borchers:
Automatic Peptides Selection for Targeted Proteomics. 1615 - Najaf Allahyari Fard:
The Necessity for Improvement of the Algorithms Used for In Silico Allergenicity Assessment of Novel Proteins. 1616 - Ayse Gul Yaman, Aybar C. Acar, Volkan Atalay, Rengül Çetin-Atalay:
Discriminative Modeling of Cell Signaling as Bayesian Networks. 1617 - Nora Millor, Pablo Lecumberri, Alicia Martinez-Ramirez, Jon Martinikorena, Marisol Gómez, Mikel Izquierdo:
Instrumented 30-s Chair Stand Test: evaluation of an exercise program in frail nonagenarians. 1618-1629 - Duhu Man, Isabel Maria Timon-Perez, Jesús A. Soto Espinosa, Antonio Flores-Sintas, José M. Cecilia, Horacio Emilio Pérez Sánchez:
An improved Fuzzy Clustering methodology applied to the study of Protein Conformational Ensembles. 1630 - R. Penafiel, Alberto Guillén, Luis Javier Herrera Maldonado:
Data Recycling of Historical Records and Integration in New Information Systems in Cardiology ervice. 1631-1633 - Olga Valenzuela, Fernando Rojas, Francisco M. Ortuño Guzman, José Luis Bernier, María José Saéz-Lara, Belén San Román, Luis Javier Herrera, Alberto Guillén, Ignacio Rojas:
Advances in bioinformatics using soft-computing paradigms. 1634-1643 - Olga Valenzuela, Belén San Román, Francisco M. Ortuño Guzman, José Luis Bernier Villamor, María José Saéz-Lara, Fernando Rojas, Ignacio Rojas:
Development of Soft-Computing techniques capable of diagnosing Alzheimers Disease in its pre-clinical stage combining MRI and FDG-PET images. 1644-1650
Virtual Presentation
- Sérgio Oliveira, Filipe Portela, Manuel Filipe Santos, José Machado, António Abelha:
Hospital bed management support using regression data mining models. 1651-1661 - Mohammad Rahman, Nafisa Chowdhury:
Introducing the Concept of Second Neighbours to FPNC algorithm for Improving the Functional Modules Detection. 1662-1673 - Anatoly Ivashchenko, Olga Berillo, Anna Pyrkova, Raigul Niyazova, Shara Atambayeva:
The Binding Sites of miR-619-5p, miR-5095, miR-5096 and miR-5585-3p in the Human mRNAs. 1674-1684 - Mana Taeb, Mohammad B. Shamsollahi, Farnaz Ghassemi, Behnam Asefi:
ERROR-RELATED POTENTIAL -IN BRAIN- ACTUATED WHEELCHAIR. 1685 - Yakang Dai, Yunhai Zhang, Zhiyong Zhou, Haomin Yang, Xiaojun Xue:
Real-time True-color Volume Visualization of Multi-channel 3D CLSM Images Based on CUDA. 1686-1693 - Preeti Kale, Jagannath Aghav:
Computation Based Disease Associations in Disease Inference. 1694-1704 - C. George Priya Doss, Chiranjib Chakraborty, Siddarth R, Nagasundaram N, Magesh R, Udhayakumar S, Priyanka N, Priyadharshini Christy J:
Impact of Single amino acid Polymorphisms in Protein-Protein interactions in tumorigenic cluster A and cluster B of VHL: Computational molecular dynamics. 1705-1716 - Fahmi Ben Rejab, Kaouther Nouira, Bilel Amri:
Physiological Data Stream from Monitoring System in Intensive Care Unit. 1717-1728 - Armando López-Cuevas, Bernardino Castillo-Toledo, Laura Medina-Ceja, Consuelo Ventura-Mejía:
State and Parameter Estimation of a Neural Mass Model from Electrophysiological Signals during Induced Status Epilepticus. 1729-1742 - José Antonio Gutiérrez Gnecchi, Rodrigo Morfin Magaña, Adriana Del Carmen Tellez Anguiano, Daniel Lorias Espinoza, Enrique Reyes-Archundia, Obeth Hernandez Diaz:
Cardiac Arrhythmia Classification Using a combination of Quadratic Spline-Based Wavelet Transform and Artificial Neural Classification Network. 1743-1754 - José Antonio Gutiérrez Gnecchi, Miguel Angel Mendoza Mendoza, Carlos Eduardo Guillen Nepita, Daniel Lorias Espinoza, Adriana Del Carmen Tellez Anguiano:
Electrical Impedance Spectroscopy imaging of the thigh using current excitation frequencies in the mid-ß frequency dispersion range. 1755-1756 - Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Bahram Goliaei:
Global Topology of Codon Usage Equality Networks of Escherichia Coli Essential Genes. 1757-1768 - Tariq Saeed, Jamil Ahmad:
A parallel approach for accelerated parameter identification of Gene Regulatory Networks. 1769-1779 - Suryaefiza Karjanto, Rasimah Aripin, Norazan Mohamed Ramli, Nor Azura Md Ghani:
Enhancing Hotelling's T2 Statistic using Shrinkage Covariance Matrix for Identifying Differentially Expressed Gene Sets. 1780-1791
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