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ORCIDHoracio Emilio Pérez Sánchez
Horacio Pérez Sánchez
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2020 – today
- 2025
[j31]Jochem Nelen, Horacio Pérez Sánchez, Hans De Winter, Dries Van Rompaey:
Matched pairs demonstrate robustness against inter-assay variability. J. Cheminformatics 17(1): 8 (2025)- 2024
- [j30]Rafael Mena Yedra
, Juana López Redondo, Horacio Emilio Pérez Sánchez, Pilar Martínez Ortigosa:
ALMERIA: Boosting Pairwise Molecular Contrasts with Scalable Methods. Informatica 35(3): 617-648 (2024) - [j29]Jochem Nelen, Miguel Carmena-Bargueño, Carlos Martinez-Cortes, Alejandro Rodríguez-Martínez, José Manuel Villalgordo-Soto, Horacio Pérez Sánchez:
ESSENCE-Dock: A Consensus-Based Approach to Enhance Virtual Screening Enrichment in Drug Discovery. J. Chem. Inf. Model. 64(5): 1605-1614 (2024) - [j28]Rafael Ruiz de San Martín, Catalina Morales-Hernández, Carmen Barberá, Carlos Martinez-Cortes, Antonio-Jesús Banegas-Luna, Francisco José Segura-Méndez, Horacio Pérez Sánchez, Isabel Morales-Moreno, Juan José Hernández-Morante:
Global and Local Interpretable Machine Learning Allow Early Prediction of Unscheduled Hospital Readmission. Mach. Learn. Knowl. Extr. 6(3): 1653-1666 (2024) - 2023
- [i5]Rafael Mena Yedra, Juana López Redondo, Horacio Pérez Sánchez, Pilar M. Ortigosa:
ALMERIA: Boosting pairwise molecular contrasts with scalable methods. CoRR abs/2305.13254 (2023) - [i4]Antonio-Jesús Banegas-Luna, Carlos Martinez-Cortes, Horacio Pérez Sánchez:
Fighting the disagreement in Explainable Machine Learning with consensus. CoRR abs/2307.01288 (2023) - 2022
- [j27]Fahimeh Motamedi, Horacio Pérez Sánchez, Alireza Mehridehnavi, Afshin Fassihi, Fahimeh Ghasemi:
Accelerating Big Data Analysis through LASSO-Random Forest Algorithm in QSAR Studies. Bioinform. 38(2): 469-475 (2022) - [j26]Savíns Puertas-Martín, Juana López Redondo, Miriam R. Ferrández, Horacio Pérez Sánchez, Pilar M. Ortigosa:
MultiPharm-DT: A Multi-Objective Decision Tool for Ligand-Based Virtual Screening Problems. Informatica 33(1): 55-80 (2022) - [c32]Savíns Puertas-Martín, Juana López Redondo, Antonio-Jesús Banegas-Luna, Ester M. Garzón, Horacio Emilio Pérez Sánchez, Valerie J. Gillet, Pilar M. Ortigosa:
Virtual Screening Based on Electrostatic Similarity and Flexible Ligands. ICCSA (Workshops 2) 2022: 127-139 - [c31]Savíns Puertas-Martín, Juana López Redondo, Ester M. Garzón, Horacio Pérez Sánchez, Pilar M. Ortigosa:
Increasing the Accuracy of Optipharm's Virtual Screening Predictions by Implementing Molecular Flexibility. IWBBIO (2) 2022: 234-245 - [i3]Antonio-Jesús Banegas-Luna, Horacio Pérez Sánchez:
SIBILA: High-performance computing and interpretable machine learning join efforts toward personalised medicine in a novel decision-making tool. CoRR abs/2205.06234 (2022) - 2021
- [j25]Baldomero Imbernón, Antonio Serrano, Andrés Bueno-Crespo, José L. Abellán, Horacio Pérez Sánchez, José M. Cecilia:
METADOCK 2: a high-throughput parallel metaheuristic scheme for molecular docking. Bioinform. 37(11): 1515-1520 (2021) - [j24]Horacio Pérez Sánchez, Helena den-Haan, Alfonso Pérez-Garrido, Jorge Peña-García, Sandipan Chakraborty, Ilkay Erdogan Orhan, Fatma Sezer Senol Deniz, José Manuel Villalgordo:
Combined Structure and Ligand-Based Design of Selective Acetylcholinesterase Inhibitors. J. Chem. Inf. Model. 61(1): 467-480 (2021) - 2020
- [j23]Antonio Serrano, Baldomero Imbernón, Horacio Pérez Sánchez, José M. Cecilia, Andrés Bueno-Crespo, José L. Abellán:
QN-Docking: An innovative molecular docking methodology based on Q-Networks. Appl. Soft Comput. 96: 106678 (2020) - [j22]Javier Prades, Baldomero Imbernón, Carlos Reaño, Jorge Peña-García, José Pedro Cerón-Carrasco, Federico Silla, Horacio Pérez Sánchez:
Maximizing resource usage in multifold molecular dynamics with rCUDA. Int. J. High Perform. Comput. Appl. 34(1) (2020) - [j21]Savíns Puertas-Martín, Juana López Redondo, Horacio Emilio Pérez Sánchez, Pilar M. Ortigosa:
Optimizing Electrostatic Similarity for Virtual Screening: A New Methodology. Informatica 31(4): 821-839 (2020) - [j20]João L. de Meirelles, Felipe C. Nepomuceno, Jorge Peña-García, Ricardo Rodríguez-Schmidt, Horacio Pérez Sánchez, Hugo Verli:
Current Status of Carbohydrates Information in the Protein Data Bank. J. Chem. Inf. Model. 60(2): 684-699 (2020) - [j19]Horacio Pérez Sánchez, Helena den-Haan, Jorge Peña-García, Jesús Lozano-Sánchez, María Encarnación Martínez Moreno, Antonia Sánchez-Pérez, Andrés Muñoz, Pedro Ruiz-Espinosa, Andreia S. P. Pereira, Antigoni Katsikoudi, José Antonio Gabaldón Hernández, Ivana Stojanovic, Antonio Segura Carretero, Andreas G. Tzakos:
DIA-DB: A Database and Web Server for the Prediction of Diabetes Drugs. J. Chem. Inf. Model. 60(9): 4124-4130 (2020) - [j18]Hocine Saadi, Nadia Nouali-Taboudjemat, Abdellatif Rahmoun, Baldomero Imbernon, Horacio Emilio Pérez Sánchez, José M. Cecilia:
Efficient GPU-based parallelization of solvation calculation for the blind docking problem. J. Supercomput. 76(3): 1980-1998 (2020) - [i2]Antonio-Jesús Banegas-Luna, Jorge Peña-García, Adrian Iftene, Fiorella Guadagni, Patrizia Ferroni, Noemi Scarpato, Fabio Massimo Zanzotto, Andrés Bueno-Crespo, Horacio Pérez Sánchez:
When will the mist clear? On the Interpretability of Machine Learning for Medical Applications: a survey. CoRR abs/2010.00353 (2020)
2010 – 2019
- 2019
- [j17]Antonio-Jesús Banegas-Luna, José Pedro Cerón-Carrasco, Savíns Puertas-Martín, Horacio Pérez Sánchez:
BRUSELAS: HPC Generic and Customizable Software Architecture for 3D Ligand-Based Virtual Screening of Large Molecular Databases. J. Chem. Inf. Model. 59(6): 2805-2817 (2019) - [j16]Fernando Jiménez, Horacio Emilio Pérez Sánchez, José T. Palma, Gracia Sánchez, Carlos Martínez:
A methodology for evaluating multi-objective evolutionary feature selection for classification in the context of virtual screening. Soft Comput. 23(18): 8775-8800 (2019) - 2018
- [j15]Fahimeh Ghasemi, Alireza Mehridehnavi, Afshin Fassihi, Horacio Emilio Pérez Sánchez:
Deep neural network in QSAR studies using deep belief network. Appl. Soft Comput. 62: 251-258 (2018) - [j14]Baldomero Imbernón, José M. Cecilia, Horacio Emilio Pérez Sánchez, Domingo Giménez:
METADOCK: A parallel metaheuristic schema for virtual screening methods. Int. J. High Perform. Comput. Appl. 32(6) (2018) - [j13]Antonio V. Contreras, Antonio Llanes, Alberto Pérez-Bernabeu, Sergio Navarro, Horacio Emilio Pérez Sánchez, Jose-Juan López-Espín, José M. Cecilia:
ENMX: An elastic network model to predict the FOREX market evolution. Simul. Model. Pract. Theory 86: 1-10 (2018) - [c30]Antonio Serrano, Baldomero Imbernón, Horacio Pérez Sánchez, José M. Cecilia, Andrés Bueno-Crespo, José L. Abellán:
Accelerating Drugs Discovery with Deep Reinforcement Learning: An Early Approach. ICPP Workshops 2018: 6:1-6:8 - [c29]Javier Prades, Carlos Reaño, Federico Silla, Baldomero Imbernón, Horacio Pérez Sánchez, José M. Cecilia:
Increasing Molecular Dynamics Simulations Throughput by Virtualizing Remote GPUs with rCUDA. ICPP Workshops 2018: 9:1-9:8 - 2017
- [j12]Gaspar Cano, José García Rodríguez, Alberto Garcia-Garcia, Horacio Pérez Sánchez, Jón Atli Benediktsson, Anil Thapa, Alastair Barr:
Automatic selection of molecular descriptors using random forest: Application to drug discovery. Expert Syst. Appl. 72: 151-159 (2017) - [j11]Fahimeh Ghasemi, Afshin Fassihi, Horacio Pérez Sánchez, Alireza Mehri Dehnavi:
The role of different sampling methods in improving biological activity prediction using deep belief network. J. Comput. Chem. 38(4): 195-203 (2017) - [c28]Hocine Saadi, Nadia Nouali-Taboudjemat, Abdellatif Rahmoun, Baldomero Imbernon, Horacio Pérez Sánchez, José M. Cecilia:
Parallel Desolvation Energy Term Calculation for Blind Docking on GPU Architectures. ICPP Workshops 2017: 16-22 - [c27]Horacio Pérez Sánchez, José Pedro Cerón-Carrasco, José M. Cecilia:
Implementation of an Efficient Blind Docking Technique on HPC Architectures for the Discovery of Allosteric Inhibitors. ICPP Workshops 2017: 33-38 - [c26]Antonio V. Contreras, Sergio Navarro, Antonio Llanes, Andrés Muñoz, Horacio Pérez Sánchez, José M. Cecilia:
The Forex Market as an Elastic Network Model. Intelligent Environments 2017: 155-156 - 2016
- [j10]Isabel Maria Timon-Perez, Jesús A. Soto, Horacio Emilio Pérez Sánchez, José M. Cecilia:
Parallel implementation of fuzzy minimals clustering algorithm. Expert Syst. Appl. 48: 35-41 (2016) - [j9]Sergey Shityakov, Ramin Ekhteiari Salmas, Serdar Durdagi, Ellaine Salvador, Katalin Pápai, Maria Josefa Yáñez-Gascón, Horacio Pérez Sánchez, István Puskás, Norbert Roewer, Carola Förster, Jens-Albert Broscheit:
Characterization, in Vivo Evaluation, and Molecular Modeling of Different Propofol-Cyclodextrin Complexes To Assess Their Drug Delivery Potential at the Blood-Brain Barrier Level. J. Chem. Inf. Model. 56(10): 1914-1922 (2016) - [c25]Horacio Emilio Pérez Sánchez, Jorge Peña-García, Helena den-Haan, Ricardo Rodríguez-Schmidt, José Pedro Cerón-Carrasco, Adriano N. Raposo, Mounira Bouarkat, Sid Ahmed Sabeur, Francisco Guillermo Díaz-Baños:
HYDROWEB, an Online Tool for the Calculation of Hydrodynamic Properties of Macromolecules. IWBBIO 2016: 82-90 - [c24]Antonio Llanes, Carlos Vélez, Antonia M. Sánchez, Horacio Emilio Pérez Sánchez, José M. Cecilia:
Parallel Ant Colony Optimization for the HP Protein Folding Problem. IWBBIO 2016: 615-626 - [c23]Javier Pérez-Sianes, Horacio Pérez Sánchez, Fernando Díaz:
Virtual Screening: A Challenge for Deep Learning. PACBB 2016: 13-22 - 2015
- [j8]Jesús Carretero, Javier García-Blas, David E. Singh, Florin Isaila, Alexey L. Lastovetsky, Thomas Fahringer, Radu Prodan, Peter Zangerl, Christi Symeonidou, Afshin Fassihi, Horacio Pérez Sánchez:
Acceleration of MPI mechanisms for sustainable HPC applications. Supercomput. Front. Innov. 2(2): 28-45 (2015) - [c22]Horacio Pérez Sánchez, Afshin Fassihi, José M. Cecilia, Hesham H. Ali, Mario Cannataro:
Applications of High Performance Computing in Bioinformatics, Computational Biology and Computational Chemistry. IWBBIO (2) 2015: 527-541 - [c21]Xiaohua Zhang, Horacio Pérez Sánchez, Felice C. Lightstone:
Molecular Dynamics Simulations of Ligand Recognition upon Binding Antithrombin: A MM/GBSA Approach. IWBBIO (2) 2015: 584-593 - [c20]Baldomero Imbernon, Antonio Llanes, Jorge Peña-García, José L. Abellán, Horacio Pérez Sánchez, José M. Cecilia:
Enhancing the Parallelization of Non-bonded Interactions Kernel for Virtual Screening on GPUs. IWBBIO (2) 2015: 620-626 - [c19]Fahimeh Ghasemi, Alireza Mehri Dehnavi, Jorge Peña-García, Helena den-Haan, Alfonso Pérez-Garrido, Afshin Fassihi, Horacio Pérez Sánchez:
Improving Activity Prediction of Adenosine A2B Receptor Antagonists by Nonlinear Models. IWBBIO (2) 2015: 635-644 - [c18]Gaspar Cano, José García Rodríguez, Sergio Orts-Escolano, Jorge Peña-García, Dharmendra Kumar-Yadav, Alfonso Pérez-Garrido, Horacio Pérez Sánchez:
Support Vector Machine Prediction of Drug Solubility on GPUs. IWBBIO (2) 2015: 645-654 - [c17]Antonia Sánchez-Pérez, Andrés Muñoz, Jorge Peña-García, Helena den-Haan, Nick Bekas, Antigoni Katsikoudi, Andreas G. Tzakos, Horacio Pérez Sánchez:
DIA-DB: A Web-Accessible Database for the Prediction of Diabetes Drugs. IWBBIO (2) 2015: 655-663 - [c16]Ramendra Pratap, Dharmendra Kumar-Yadav, Surjeet Singh, Reeta Rai, Naresh Kumar, Han-Sup Uhm, Harpreet Singh, Horacio Pérez Sánchez:
Molecular Docking and Biological Evaluation of Functionalized benzo[h]quinolines as Colon Cancer Agents. IWBBIO (2) 2015: 664-673 - [i1]Horacio Pérez Sánchez, Vahid Rezaei Tabar, Vitaliy Mezhuyev, Duhu Man, Jorge Peña-García, Helena den-Haan, Sandra Gesing:
Developing science gateways for drug discovery in a grid environment. PeerJ Prepr. 3: e1245 (2015) - 2014
- [j7]Horacio Emilio Pérez Sánchez, Gaspar Cano, José García Rodríguez:
Improving drug discovery using hybrid softcomputing methods. Appl. Soft Comput. 20: 119-126 (2014) - [j6]Ivan Merelli, Horacio Emilio Pérez Sánchez, Sandra Gesing, Daniele D'Agostino:
Latest advances in distributed, parallel, and graphic processing unit accelerated approaches to computational biology. Concurr. Comput. Pract. Exp. 26(10): 1699-1704 (2014) - [j5]Ginés D. Guerrero, Richard M. Wallace, José Luis Vázquez-Poletti, José M. Cecilia, José M. García, Daniel Mozos, Horacio Emilio Pérez Sánchez:
A performance/cost model for a CUDA drug discovery application on physical and public cloud infrastructures. Concurr. Comput. Pract. Exp. 26(10): 1787-1798 (2014) - [j4]Ginés D. Guerrero, Juan M. Cebrian, Horacio Emilio Pérez Sánchez, José M. García, Manuel Ujaldon, José M. Cecilia:
Toward energy efficiency in heterogeneous processors: findings on virtual screening methods. Concurr. Comput. Pract. Exp. 26(10): 1832-1846 (2014) - [c15]Horacio Emilio Pérez Sánchez, José M. Cecilia, Ivan Merelli:
The role of High Performance Computing in Bioinformatics. IWBBIO 2014: 494-506 - [c14]Daniel Rodrigo Ferraz Bonetti, Horacio Pérez Sánchez, Alexandre C. B. Delbem:
An Efficient Solvent Accessible Surface Area calculation applied in Ab Initio Protein Structure Prediction. IWBBIO 2014: 575-578 - [c13]Jianbin Fang, Ana Lucia Varbanescu, Baldomero Imbernon, José M. Cecilia, Horacio Emilio Pérez Sánchez:
Parallel Computation of Non-Bonded Interactions in Drug Discovery: Nvidia GPUs vs. Intel Xeon Phi. IWBBIO 2014: 579-588 - [c12]José Pedro Cerón-Carrasco, Javier Cerezo, Jose Zuñiga, Alberto Requena, Julia Contreras-Garcia, Sonali Chavan, Miguel Manrubia-Cobo, Baldomero Imbernon, José M. Cecilia, Horacio Emilio Pérez Sánchez:
Application of parallel blind docking with BINDSURF for the study of platinum derived compounds as anticancer drugs. IWBBIO 2014: 972-976 - [c11]Duhu Man, Isabel Maria Timon-Perez, Jesús A. Soto Espinosa, Antonio Flores-Sintas, José M. Cecilia, Horacio Emilio Pérez Sánchez:
An improved Fuzzy Clustering methodology applied to the study of Protein Conformational Ensembles. IWBBIO 2014: 1630 - [c10]Jesús Carretero, Javier García Blas, David E. Singh, Florin Isaila, Thomas Fahringer, Radu Prodan, George Bosilca, Alexey L. Lastovetsky, Christi Symeonidou, Horacio Emilio Pérez Sánchez, José M. Cecilia:
Optimizations to enhance sustainability of MPI applications. EuroMPI/ASIA 2014: 145 - 2013
- [j3]Qian Zhang, Junmei Wang, Ginés D. Guerrero, José M. Cecilia, José M. García, Youyong Li, Horacio Emilio Pérez Sánchez, Tingjun Hou:
Accelerated Conformational Entropy Calculations Using Graphic Processing Units. J. Chem. Inf. Model. 53(8): 2057-2064 (2013) - [c9]Horacio Emilio Pérez Sánchez, Ginés D. Guerrero, José M. García, Jorge Peña-García, José M. Cecilia, Gaspar Cano, Sergio Orts-Escolano, José García Rodríguez:
Improving drug discovery using a neural networks based parallel scoring function. IJCNN 2013: 1-5 - [c8]Ginés D. Guerrero, José M. Cecilia, José M. García, Horacio Emilio Pérez Sánchez:
Impact of implicit solvation models on database enrichment in GPU based blind Virtual Screening. IWBBIO 2013: 731-734 - [c7]Qian Zhang, José M. García, Junmei Wang, Tingjun Hou, Horacio Emilio Pérez Sánchez:
A GPU based Conformational Entropy Calculation Method. IWBBIO 2013: 735-743 - 2012
- [j2]Irene Sánchez-Linares, Horacio Emilio Pérez Sánchez, José M. Cecilia, José M. García:
High-Throughput parallel blind Virtual Screening using BINDSURF. BMC Bioinform. 13(S-14): S13 (2012) - [c6]Ginés D. Guerrero, Horacio Emilio Pérez Sánchez, José M. Cecilia, José M. García:
Parallelization of Virtual Screening in Drug Discovery on Massively Parallel Architectures. PDP 2012: 588-595 - 2011
- [c5]Irene Sánchez-Linares, Horacio Emilio Pérez Sánchez, Ginés D. Guerrero, José M. Cecilia, José M. García:
Accelerating multiple target drug screening on GPUs. CMSB 2011: 95-102 - [c4]Horacio Emilio Pérez Sánchez, Ivan Kondov, José M. García, Konstantin V. Klenin, Wolfgang Wenzel:
A Pipeline Pilot based SOAP implementation of FlexScreen for High-Throughput Virtual Screening. IWSG-Life 2011 - [c3]Ginés D. Guerrero, Horacio Emilio Pérez Sánchez, Wolfgang Wenzel, José M. Cecilia, José M. García:
Effective Parallelization of Non-bonded Interactions Kernel for Virtual Screening on GPUs. PACBB 2011: 63-69 - [c2]Irene Sánchez-Linares, Horacio Emilio Pérez Sánchez, José M. García:
Accelerating Grid Kernels for Virtual Screening on Graphics Processing Units. PARCO 2011: 413-420 - 2010
- [j1]Horacio Emilio Pérez Sánchez, Bernhard Fischer, Daria B. Kokh, Holger Merlitz, Wolfgang Wenzel:
High throughput in-silico screening against flexible protein receptors. J. Cheminformatics 2(S-1): 23 (2010)
2000 – 2009
- 2009
- [c1]Horacio Emilio Pérez Sánchez, Wolfgang Wenzel:
Implementation of an effective non-bonded interactions kernel for biomolecular simulations on the Cell processor. GI Jahrestagung 2009: 721-729
Coauthor Index
Baldomero Imbernon
aka: Baldomero Imbernón
aka: Baldomero Imbernón
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