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ORCIDKengo Kinoshita
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2020 – today
- 2023
[j32]Takeshi Obayashi
, Shun Kodate, Himiko Hibara, Yuki Kagaya, Kengo Kinoshita:
COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations. Nucleic Acids Res. 51(D1): 80- (2023)- [c2]Siwalee Choilek, Akihiro Karashima, Ikuko N. Motoike, Norihiro Katayama, Kengo Kinoshita, Mitsuyuki Nakao:
Statistical Modeling of Subjective Sleep Quality. EMBC 2023: 1-6 - 2021
- [j31]Shu Tadaka, Eiji Hishinuma, Shohei Komaki, Ikuko N. Motoike, Junko Kawashima, Daisuke Saigusa, Jin Inoue, Jun Takayama, Yasunobu Okamura, Yuichi Aoki, Matsuyuki Shirota, Akihito Otsuki, Fumiki Katsuoka, Atsushi Shimizu, Gen Tamiya, Seizo Koshiba, Makoto Sasaki, Masayuki Yamamoto, Kengo Kinoshita:
jMorp updates in 2020: large enhancement of multi-omics data resources on the general Japanese population. Nucleic Acids Res. 49(Database-Issue): D536-D544 (2021) - 2020
- [j30]Hayato Anzawa, Hitoshi Yamagata, Kengo Kinoshita:
Theoretical characterisation of strand cross-correlation in ChIP-seq. BMC Bioinform. 21(1): 417 (2020) - [j29]Kaname Kojima, Shu Tadaka, Fumiki Katsuoka, Gen Tamiya, Masayuki Yamamoto, Kengo Kinoshita:
A genotype imputation method for de-identified haplotype reference information by using recurrent neural network. PLoS Comput. Biol. 16(10) (2020)
2010 – 2019
- 2019
- [j28]Takeshi Obayashi, Yuki Kagaya, Yuichi Aoki, Shu Tadaka, Kengo Kinoshita:
COXPRESdb v7: a gene coexpression database for 11 animal species supported by 23 coexpression platforms for technical evaluation and evolutionary inference. Nucleic Acids Res. 47(Database-Issue): D55-D62 (2019) - [c1]Ryota Amano, Akihiro Karashima, Ikuko N. Motoike, Norihiro Katayama, Kengo Kinoshita, Mitsuyuki Nakao:
Relationship between Dynamics of Physiological Signals and Subjective Quality of Life and Its Lifestyle Dependency. EMBC 2019: 546-549 - 2018
- [j27]Yasunobu Okamura, Kengo Kinoshita:
Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data. BMC Bioinform. 19(1): 266:1-266:9 (2018) - [j26]Kazunori D. Yamada, Kengo Kinoshita:
De novo profile generation based on sequence context specificity with the long short-term memory network. BMC Bioinform. 19(1): 272:1-272:11 (2018) - [j25]Shu Tadaka, Daisuke Saigusa, Ikuko N. Motoike, Jin Inoue, Yuichi Aoki, Matsuyuki Shirota, Seizo Koshiba, Masayuki Yamamoto, Kengo Kinoshita:
jMorp: Japanese Multi Omics Reference Panel. Nucleic Acids Res. 46(Database-Issue): D551-D557 (2018) - 2017
- [j24]Takako Takai-Igarashi, Kengo Kinoshita, Masao Nagasaki, Soichi Ogishima, Naoki Nakamura, Sachiko Nagase, Satoshi Nagaie, Tomo Saito, Fuji Nagami, Naoko Minegishi, Yoichi Suzuki, Kichiya Suzuki, Hiroaki Hashizume, Shinichi Kuriyama, Atsushi Hozawa, Nobuo Yaegashi, Shigeo Kure, Gen Tamiya, Yoshio Kawaguchi, Hiroshi Tanaka, Masayuki Yamamoto:
Security controls in an integrated Biobank to protect privacy in data sharing: rationale and study design. BMC Medical Informatics Decis. Mak. 17(1): 100:1-100:12 (2017) - 2016
- [j23]Matsuyuki Shirota, Kengo Kinoshita:
Discrepancies between human DNA, mRNA and protein reference sequences and their relation to single nucleotide variants in the human population. Database J. Biol. Databases Curation 2016 (2016) - [j22]Shu Tadaka, Kengo Kinoshita:
NCMine: Core-peripheral based functional module detection using near-clique mining. Bioinform. 32(22): 3454-3460 (2016) - 2015
- [j21]Yasunobu Okamura, Yuichi Aoki, Takeshi Obayashi, Shu Tadaka, Satoshi Ito, Takafumi Narise, Kengo Kinoshita:
COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res. 43(Database-Issue): 82-86 (2015) - 2014
- [j20]Kota Kasahara, Kengo Kinoshita:
GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes. BMC Bioinform. 15: 12 (2014) - 2013
- [j19]Kota Kasahara, Matsuyuki Shirota, Kengo Kinoshita:
Comprehensive Classification and Diversity Assessment of Atomic Contacts in Protein-Small Ligand Interactions. J. Chem. Inf. Model. 53(1): 241-248 (2013) - [j18]Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Ikuko N. Motoike, Kengo Kinoshita:
COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. Nucleic Acids Res. 41(Database-Issue): 1014-1020 (2013) - 2011
- [j17]Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii, Nozomi Nagano, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki, Tsuyoshi Shirai, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota:
SAHG, a comprehensive database of predicted structures of all human proteins. Nucleic Acids Res. 39(Database-Issue): 487-493 (2011) - [j16]Takeshi Obayashi, Kengo Kinoshita:
COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res. 39(Database-Issue): 1016-1022 (2011) - 2010
- [j15]Kota Kasahara, Kengo Kinoshita, Toshihisa Takagi:
Ligand-binding site prediction of proteins based on known fragment-fragment interactions. Bioinform. 26(12): 1493-1499 (2010)
2000 – 2009
- 2009
- [j14]Kengo Kinoshita, Takeshi Obayashi:
Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. Bioinform. 25(20): 2677-2684 (2009) - [j13]Miho Higurashi, Takashi Ishida, Kengo Kinoshita:
PiSite: a database of protein interaction sites using multiple binding states in the PDB. Nucleic Acids Res. 37(Database-Issue): 360-364 (2009) - [j12]Takeshi Obayashi, Shinpei Hayashi, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita:
ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res. 37(Database-Issue): 987-991 (2009) - 2008
- [j11]Daron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura:
Protein structure databases with new web services for structural biology and biomedical research. Briefings Bioinform. 9(4): 276-285 (2008) - [j10]Takashi Ishida, Kengo Kinoshita:
Prediction of disordered regions in proteins based on the meta approach. Bioinform. 24(11): 1344-1348 (2008) - [j9]Takeshi Obayashi, Shinpei Hayashi, Masayuki Shibaoka, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita:
COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res. 36(Database-Issue): 77-82 (2008) - 2007
- [j8]Takeshi Obayashi, Kengo Kinoshita, Kenta Nakai, Masayuki Shibaoka, Shinpei Hayashi, Motoshi Saeki, Daisuke Shibata, Kazuki Saito, Hiroyuki Ohta:
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res. 35(Database-Issue): 863-869 (2007) - [j7]Kengo Kinoshita, Yoichi Murakami, Haruki Nakamura:
eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape. Nucleic Acids Res. 35(Web-Server-Issue): 398-402 (2007) - [j6]Takashi Ishida, Kengo Kinoshita:
PrDOS: prediction of disordered protein regions from amino acid sequence. Nucleic Acids Res. 35(Web-Server-Issue): 460-464 (2007) - 2006
- [j5]Nicolas Sierro, Takehiro Kusakabe, Keun-Joon Park, Riu Yamashita, Kengo Kinoshita, Kenta Nakai:
DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database-Issue): 552-555 (2006) - [j4]Yuko Tsuchiya, Kengo Kinoshita, Nobutoshi Ito, Haruki Nakamura:
PreBI: prediction of biological interfaces of proteins in crystals. Nucleic Acids Res. 34(Web-Server-Issue): 20-24 (2006) - 2005
- [j3]Yuko Tsuchiya, Kengo Kinoshita, Haruki Nakamura:
PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces. Bioinform. 21(8): 1721-1723 (2005) - [j2]Kengo Kinoshita, Motonori Ota:
P-cats: prediction of catalytic residues in proteins from their tertiary structures. Bioinform. 21(17): 3570-3571 (2005) - 2004
- [j1]Kengo Kinoshita, Haruki Nakamura:
eF-site and PDBjViewer: database and viewer for protein functional sites. Bioinform. 20(8): 1329-1330 (2004)
Coauthor Index
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